FFCP PHASE1:Mm9::chr8:67653512..67653519,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:67653512..67653519,-
|short_description=p6@BC030870
|description=CAGE_peak_6_at_BC030870_5end
|association_with_transcript=-76bp_to_NR_033217,uc009lvi.2_5e...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=407795 | |EntrezGene=407795 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-76bp_to_NR_033217,uc009lvi.2_5end | |||
|cluster_id=chr8:67653512..67653519,- | |||
|description=CAGE_peak_6_at_BC030870_5end | |||
|id=chr8:67653512..67653519,- | |||
|ontology_enrichment_celltype=CL:0002563!3.57e-14!9;CL:0002251!3.57e-14!9;CL:0000239!8.31e-11!6;CL:0000677!8.31e-11!6;CL:0000212!8.31e-11!6;CL:0000584!8.31e-11!6;CL:0000075!4.17e-09!7;CL:0002076!1.15e-07!15;CL:0000066!2.16e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.98e-22,6;CL:0000677,2.98e-22,6;CL:0000584,2.98e-22,6;CL:0000075,5.24e-19,7;CL:0002563,1.13e-14,9;CL:0002251,1.13e-14,9;CL:0000682,6.01e-12,3;CL:0000066,7.11e-11,25;CL:0002076,1.37e-08,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.63e-27!43;UBERON:0000344!1.40e-23!15;UBERON:0005409!8.21e-23!59;UBERON:0001242!2.25e-20!13;UBERON:0000060!2.25e-20!13;UBERON:0001262!2.25e-20!13;UBERON:0004786!2.25e-20!13;UBERON:0003350!3.57e-14!9;UBERON:0004808!3.57e-14!9;UBERON:0001277!3.57e-14!9;UBERON:0004923!4.37e-13!24;UBERON:0000485!3.31e-11!11;UBERON:0001007!1.23e-10!128;UBERON:0001555!1.23e-10!128;UBERON:0007026!1.23e-10!128;UBERON:0004119!2.58e-10!130;UBERON:0000925!2.58e-10!130;UBERON:0006595!2.58e-10!130;UBERON:0004921!3.52e-09!126;UBERON:0004185!3.52e-09!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.37e-40,31;UBERON:0000344,4.89e-29,15;UBERON:0005409,1.71e-25,47;UBERON:0001242,1.58e-22,13;UBERON:0001262,1.58e-22,13;UBERON:0004786,1.58e-22,13;UBERON:0004923,1.96e-17,24;UBERON:0003350,1.13e-14,9;UBERON:0004808,1.13e-14,9;UBERON:0001277,1.13e-14,9;UBERON:0000485,6.54e-12,11;UBERON:0001007,1.01e-10,116;UBERON:0001555,1.01e-10,116;UBERON:0007026,1.01e-10,116;UBERON:0004119,1.78e-10,118;UBERON:0000925,1.78e-10,118;UBERON:0006595,1.78e-10,118;UBERON:0002108,5.38e-09,4;UBERON:0001962,1.26e-08,2;UBERON:0001961,1.26e-08,2;UBERON:0001744,1.26e-08,2;UBERON:0004921,1.74e-08,114 | |||
|phase1_expression=0,4.53668029931169,1.81999695755814,4.53696316960245,4.50806156951712,1.00727563147134,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35984087866154,2.2940928106717,1.72269589234506,5.1691439539089,2.37018355954478,2.47030445293286,2.77233142735924,0.665191531965914,0,0,0,0.288851619751275,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61711931072457,7.40461586657924,0,0,0.128867461322093,0.403367049246685,2.2237804384487,0.760902504450237,1.42358718463353,1.81168850196412,1.00534083520108,0.795825888164603,0.58489226135736,1.79763881730844,2.59365659849633,5.97423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0.234690248288502,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7488850197791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0,0,0.165306911450672,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0.25347929989024,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0.147198920134397,0,0.354951612318675,0.238436189947321,0,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,4.53668029931169,1.81999695755814,4.53696316960245,4.50806156951712,1.00727563147134,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35984087866154,2.2940928106717,1.72269589234506,5.1691439539089,2.37018355954478,2.47030445293286,2.77233142735924,0.665191531965914,0,0,0,0.288851619751275,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61711931072457,7.40461586657924,0,0,0.128867461322093,0.403367049246685,2.2237804384487,0.760902504450237,1.42358718463353,1.81168850196412,1.00534083520108,0.795825888164603,0.58489226135736,1.79763881730844,2.59365659849633,5.97423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0.234690248288502,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7488850197791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0,0,0.165306911450672,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0.25347929989024,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0.147198920134397,0,0.354951612318675,0.238436189947321,0,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | ||
|short_description=p6@BC030870 | |||
}} | }} |
Latest revision as of 16:18, 25 September 2015
Short description: | p6@BC030870 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_BC030870_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -76bp_to_NR_033217, uc009lvi.2_5end |
EntrezGene: | BC030870 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.98e-22 | 6 |
gut absorptive cell | 2.98e-22 | 6 |
enterocyte | 2.98e-22 | 6 |
columnar/cuboidal epithelial cell | 5.24e-19 | 7 |
intestinal epithelial cell | 1.13e-14 | 9 |
epithelial cell of alimentary canal | 1.13e-14 | 9 |
M cell of gut | 6.01e-12 | 3 |
epithelial cell | 7.11e-11 | 25 |
endo-epithelial cell | 1.37e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.37e-40 | 31 |
mucosa | 4.89e-29 | 15 |
gastrointestinal system | 1.71e-25 | 47 |
intestinal mucosa | 1.58e-22 | 13 |
wall of intestine | 1.58e-22 | 13 |
gastrointestinal system mucosa | 1.58e-22 | 13 |
organ component layer | 1.96e-17 | 24 |
epithelium of mucosa | 1.13e-14 | 9 |
gastrointestinal system epithelium | 1.13e-14 | 9 |
intestinal epithelium | 1.13e-14 | 9 |
simple columnar epithelium | 6.54e-12 | 11 |
digestive system | 1.01e-10 | 116 |
digestive tract | 1.01e-10 | 116 |
primitive gut | 1.01e-10 | 116 |
endoderm-derived structure | 1.78e-10 | 118 |
endoderm | 1.78e-10 | 118 |
presumptive endoderm | 1.78e-10 | 118 |
small intestine | 5.38e-09 | 4 |
gut-associated lymphoid tissue | 1.26e-08 | 2 |
mucosa-associated lymphoid tissue | 1.26e-08 | 2 |
lymphoid tissue | 1.26e-08 | 2 |
subdivision of digestive tract | 1.74e-08 | 114 |