FFCP PHASE1:Mm9::chr7:108450534..108450596,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:108450534..108450596,-
|short_description=p1@Atg16l2
|description=CAGE_peak_1_at_Atg16l2_5end
|association_with_transcript=0bp_to_ENSMUST00000122116,ENSMUS...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=73683 | |EntrezGene=73683 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=233 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z653,D6RHC1,Q6KAU8 | |UniProt=D3Z653,D6RHC1,Q6KAU8 | ||
|association_with_transcript=0bp_to_ENSMUST00000122116,ENSMUST00000140553,ENSMUST00000143630_5end | |||
|cluster_id=chr7:108450534..108450596,- | |||
|description=CAGE_peak_1_at_Atg16l2_5end | |||
|id=chr7:108450534..108450596,- | |||
|ontology_enrichment_celltype=CL:0000838!1.05e-08!12;CL:0000084!4.97e-08!11;CL:0000827!4.97e-08!11;CL:0000542!9.97e-08!13;CL:0000051!9.97e-08!13;CL:0000791!3.81e-07!9;CL:0000789!3.81e-07!9;CL:0002420!3.81e-07!9;CL:0002419!3.81e-07!9;CL:0000790!3.81e-07!9;CL:0000219!7.93e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.05e-08,12;CL:0000084,4.97e-08,11;CL:0000827,4.97e-08,11;CL:0000542,9.97e-08,13;CL:0000051,9.97e-08,13;CL:0000791,3.81e-07,9;CL:0000789,3.81e-07,9;CL:0002420,3.81e-07,9;CL:0002419,3.81e-07,9;CL:0000790,3.81e-07,9;CL:0000219,7.62e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!5.44e-14!88;UBERON:0002390!5.41e-10!45;UBERON:0003061!5.41e-10!45;UBERON:0004177!5.46e-10!29;UBERON:0002370!1.02e-09!23;UBERON:0000974!1.02e-09!23;UBERON:0004807!1.02e-09!23;UBERON:0005058!1.02e-09!23;UBERON:0003351!1.02e-09!23;UBERON:0009113!1.02e-09!23;UBERON:0003295!1.02e-09!23;UBERON:0009722!1.02e-09!23;UBERON:0005562!1.02e-09!23;UBERON:0007690!1.02e-09!23;UBERON:0006562!1.30e-09!24;UBERON:0001557!1.30e-09!24;UBERON:0001042!1.30e-09!24;UBERON:0008814!1.30e-09!24;UBERON:0009145!1.30e-09!24;UBERON:0002193!2.16e-09!48;UBERON:0003408!1.13e-08!24;UBERON:0000063!3.00e-08!35;UBERON:0002405!5.38e-08!70;UBERON:0000926!1.70e-07!193;UBERON:0004120!1.70e-07!193;UBERON:0006603!1.70e-07!193;UBERON:0005057!1.99e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.53e-13,87;UBERON:0000926,4.08e-10,120;UBERON:0004120,4.08e-10,120;UBERON:0006603,4.08e-10,120;UBERON:0002390,5.40e-10,45;UBERON:0003061,5.40e-10,45;UBERON:0004177,5.45e-10,29;UBERON:0005057,5.45e-10,29;UBERON:0000077,6.28e-10,35;UBERON:0002370,1.02e-09,23;UBERON:0000974,1.02e-09,23;UBERON:0004807,1.02e-09,23;UBERON:0005058,1.02e-09,23;UBERON:0003351,1.02e-09,23;UBERON:0009113,1.02e-09,23;UBERON:0003295,1.02e-09,23;UBERON:0009722,1.02e-09,23;UBERON:0005562,1.02e-09,23;UBERON:0007690,1.02e-09,23;UBERON:0006562,1.30e-09,24;UBERON:0001557,1.30e-09,24;UBERON:0001042,1.30e-09,24;UBERON:0008814,1.30e-09,24;UBERON:0009145,1.30e-09,24;UBERON:0002193,2.16e-09,48;UBERON:0002405,2.16e-09,48;UBERON:0003408,1.12e-08,24 | |||
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| ||
|short_description=p1@Atg16l2 | |||
}} | }} |
Latest revision as of 15:15, 25 September 2015
Short description: | p1@Atg16l2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Atg16l2_5end |
Coexpression cluster: | MCL_coexpression_mm9:233 |
Association with transcript: | 0bp_to_ENSMUST00000122116, ENSMUST00000140553, ENSMUST00000143630_5end |
EntrezGene: | Atg16l2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.05e-08 | 12 |
T cell | 4.97e-08 | 11 |
pro-T cell | 4.97e-08 | 11 |
lymphocyte | 9.97e-08 | 13 |
common lymphoid progenitor | 9.97e-08 | 13 |
mature alpha-beta T cell | 3.81e-07 | 9 |
alpha-beta T cell | 3.81e-07 | 9 |
immature T cell | 3.81e-07 | 9 |
mature T cell | 3.81e-07 | 9 |
immature alpha-beta T cell | 3.81e-07 | 9 |
motile cell | 7.62e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.53e-13 | 87 |
mesoderm | 4.08e-10 | 120 |
mesoderm-derived structure | 4.08e-10 | 120 |
presumptive mesoderm | 4.08e-10 | 120 |
hematopoietic system | 5.40e-10 | 45 |
blood island | 5.40e-10 | 45 |
hemopoietic organ | 5.45e-10 | 29 |
immune organ | 5.45e-10 | 29 |
mixed endoderm/mesoderm-derived structure | 6.28e-10 | 35 |
thymus | 1.02e-09 | 23 |
neck | 1.02e-09 | 23 |
respiratory system epithelium | 1.02e-09 | 23 |
hemolymphoid system gland | 1.02e-09 | 23 |
pharyngeal epithelium | 1.02e-09 | 23 |
thymic region | 1.02e-09 | 23 |
pharyngeal gland | 1.02e-09 | 23 |
entire pharyngeal arch endoderm | 1.02e-09 | 23 |
thymus primordium | 1.02e-09 | 23 |
early pharyngeal endoderm | 1.02e-09 | 23 |
pharynx | 1.30e-09 | 24 |
upper respiratory tract | 1.30e-09 | 24 |
chordate pharynx | 1.30e-09 | 24 |
pharyngeal arch system | 1.30e-09 | 24 |
pharyngeal region of foregut | 1.30e-09 | 24 |
hemolymphoid system | 2.16e-09 | 48 |
immune system | 2.16e-09 | 48 |
gland of gut | 1.12e-08 | 24 |