FFCP PHASE1:Mm9::chr9:57981847..57981877,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=20897|HGNC=|MCL_coexpression_id=578|UniProt=E9Q3G2,O70491|association_with_transcript=-4bp_to_ENSMUST00000147134,ENSMUST00000170397,NM_001162476,uc012guc.1_5end|description=CAGE_peak_2_at_Stra6_5end|id=chr9:57981847..57981877,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.42e-14!71;UBERON:0003075!2.42e-14!71;UBERON:0007284!2.42e-14!71;UBERON:0000033!4.90e-13!63;UBERON:0003056!1.14e-12!49;UBERON:0004121!1.30e-11!102;UBERON:0000924!1.30e-11!102;UBERON:0006601!1.30e-11!102;UBERON:0000020!1.95e-09!12;UBERON:0001032!1.95e-09!12;UBERON:0004456!1.95e-09!12;UBERON:0000970!7.35e-09!9;UBERON:0000019!7.35e-09!9;UBERON:0000047!7.35e-09!9;UBERON:0004088!7.35e-09!9;UBERON:0002104!7.35e-09!9;UBERON:0001456!7.35e-09!9;UBERON:0003072!7.35e-09!9;UBERON:0003071!7.35e-09!9;UBERON:0004128!7.35e-09!9;UBERON:0001049!1.18e-08!52;UBERON:0005068!1.18e-08!52;UBERON:0006241!1.18e-08!52;UBERON:0007135!1.18e-08!52;UBERON:0000153!4.42e-08!94;UBERON:0001017!7.39e-08!73;UBERON:0005743!7.39e-08!73;UBERON:0001444!8.33e-08!11;UBERON:0000073!2.84e-07!75;UBERON:0001016!2.84e-07!75;UBERON:0000007!3.45e-07!8;UBERON:0003296!3.45e-07!8;UBERON:0010133!3.45e-07!8;UBERON:0000955!4.18e-07!50;UBERON:0006238!4.18e-07!50;UBERON:0005085!4.32e-07!13;UBERON:0003080!5.86e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0000970,4.71e-20,9;UBERON:0000019,4.71e-20,9;UBERON:0000047,4.71e-20,9;UBERON:0010312,4.71e-20,9;UBERON:0004088,4.71e-20,9;UBERON:0002104,4.71e-20,9;UBERON:0001456,4.71e-20,9;UBERON:0003072,4.71e-20,9;UBERON:0004128,4.71e-20,9;UBERON:0003071,4.71e-20,9;UBERON:0001444,4.83e-16,11;UBERON:0000020,1.54e-14,12;UBERON:0001032,1.54e-14,12;UBERON:0004456,1.54e-14,12;UBERON:0000007,1.26e-13,8;UBERON:0003296,1.26e-13,8;UBERON:0010133,1.26e-13,8;UBERON:0000033,2.87e-13,13;UBERON:0005085,2.87e-13,13;UBERON:0001894,1.19e-10,10;UBERON:0006222,1.19e-10,10;UBERON:0003056,1.30e-09,49;UBERON:0002346,3.54e-08,64;UBERON:0003075,3.54e-08,64;UBERON:0007284,3.54e-08,64|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79972843250725,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,3.38844532069132,3.55717918444456,0,0,0,1.19840044207362,4.2264013585371,0.414758449233911,0.675029691658453,0.210324961351382,0.571301968807607,0.883474163806454,0.734944795289724,0.862609239164127,0.919218786610021,0,0.127687338085188,0,1.18697658957174,0.914876436024097,0,0.279182999001381,0.56276261003168,0.763991238884051,0,0.854230084794618,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0.216491041011214,0,0.505524445014783,0,0,0.445326417194474,1.73485326766136,0.608930956624282,0.230615497256059,0,0.23517741427141,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0.599162557619291,0,0.251308704225729,0.695297280769106,0.511430914660661,0,0,1.42575109390443,0.124406970610093,0.252722758433675,4.20883711772948,8.71806967850115,2.75882525320168,4.86167750474443,3.31550599238573,5.3748834329549,3.97152532883034,4.31027932974753,6.46758426847539,1.29340795759705,1.51284864134255,1.93546236580344,1.09597866213787,0.834141747676794,0.348252166522167,0.205782136407943,1.19420560091096,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0.420579897128254,0.205809224758569,0,0,2.13288250535234,0.696710015581316,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0.329397909448022,0,0,0,0,0,0,1.51734320762465,1.37098215131675,1.1270773567308,0.203651327845314,0.775809948670503,0.49095073923223,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.651859905768103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28440471990234,0.234423373184406,0,0.252470927204373,0.315508219416257,0,0,0,0,0,0,0.292255857911312,0,0.963963949265421,0.851640511249612,3.02711526234334,1.30309567482861,1.15479086080775,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0.340439605753788,3.42116078659489,5.17434735131018,3.42939256050548,7.09360934569094,4.45922044005176,5.43011767986999,1.522324745573,0.704015124191131,0.21183207086382,0.220528398054962,0,0,0.0603129249281559,0,0.328281799490123,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,3.00519193902079,0.406638934253697,0.108005340821801,0,0,0,0,0,0,0,0,0.897099276263873,0.66183396182839,1.16670713006429,1.80823752868824,1.35164900392623,0.821500670520278,1.0416350787516,0.314578033277133,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0,0,0.183151624267265,0,0,0,0.920650473014354,0,0.171853182343688,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0.93408612825759,2.79317411380722,0.853668028770671,0.486213434136588,0.209613162627982,0.367687016900028,0.44449345560323,0.412070114477788,0.320919209591815,0.252697211763798,0.50695859978048,0,0.280924522409647,0.320125762024346,0.17230640686684,0.476293691283074,0.347652977834566,0,0.412085900803307,0.147198920134397,0.685738504770831,0,0.476872379894642,0,0.188218760830661,0,0,0,0.135804113845862,0,0.355905054372522,0.394017929502254,0.409231043169689,0.309873682371932,0,0.749431733813838,0.233931608445408,0,0,0,0|short_description=p2@Stra6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20897 | |||
|HGNC= | |||
|MCL_coexpression_id=578 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q3G2,O70491 | |||
|association_with_transcript=-4bp_to_ENSMUST00000147134,ENSMUST00000170397,NM_001162476,uc012guc.1_5end | |||
|cluster_id=chr9:57981847..57981877,+ | |||
|description=CAGE_peak_2_at_Stra6_5end | |||
|id=chr9:57981847..57981877,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.42e-14!71;UBERON:0003075!2.42e-14!71;UBERON:0007284!2.42e-14!71;UBERON:0000033!4.90e-13!63;UBERON:0003056!1.14e-12!49;UBERON:0004121!1.30e-11!102;UBERON:0000924!1.30e-11!102;UBERON:0006601!1.30e-11!102;UBERON:0000020!1.95e-09!12;UBERON:0001032!1.95e-09!12;UBERON:0004456!1.95e-09!12;UBERON:0000970!7.35e-09!9;UBERON:0000019!7.35e-09!9;UBERON:0000047!7.35e-09!9;UBERON:0004088!7.35e-09!9;UBERON:0002104!7.35e-09!9;UBERON:0001456!7.35e-09!9;UBERON:0003072!7.35e-09!9;UBERON:0003071!7.35e-09!9;UBERON:0004128!7.35e-09!9;UBERON:0001049!1.18e-08!52;UBERON:0005068!1.18e-08!52;UBERON:0006241!1.18e-08!52;UBERON:0007135!1.18e-08!52;UBERON:0000153!4.42e-08!94;UBERON:0001017!7.39e-08!73;UBERON:0005743!7.39e-08!73;UBERON:0001444!8.33e-08!11;UBERON:0000073!2.84e-07!75;UBERON:0001016!2.84e-07!75;UBERON:0000007!3.45e-07!8;UBERON:0003296!3.45e-07!8;UBERON:0010133!3.45e-07!8;UBERON:0000955!4.18e-07!50;UBERON:0006238!4.18e-07!50;UBERON:0005085!4.32e-07!13;UBERON:0003080!5.86e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,4.71e-20,9;UBERON:0000019,4.71e-20,9;UBERON:0000047,4.71e-20,9;UBERON:0010312,4.71e-20,9;UBERON:0004088,4.71e-20,9;UBERON:0002104,4.71e-20,9;UBERON:0001456,4.71e-20,9;UBERON:0003072,4.71e-20,9;UBERON:0004128,4.71e-20,9;UBERON:0003071,4.71e-20,9;UBERON:0001444,4.83e-16,11;UBERON:0000020,1.54e-14,12;UBERON:0001032,1.54e-14,12;UBERON:0004456,1.54e-14,12;UBERON:0000007,1.26e-13,8;UBERON:0003296,1.26e-13,8;UBERON:0010133,1.26e-13,8;UBERON:0000033,2.87e-13,13;UBERON:0005085,2.87e-13,13;UBERON:0001894,1.19e-10,10;UBERON:0006222,1.19e-10,10;UBERON:0003056,1.30e-09,49;UBERON:0002346,3.54e-08,64;UBERON:0003075,3.54e-08,64;UBERON:0007284,3.54e-08,64 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79972843250725,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,3.38844532069132,3.55717918444456,0,0,0,1.19840044207362,4.2264013585371,0.414758449233911,0.675029691658453,0.210324961351382,0.571301968807607,0.883474163806454,0.734944795289724,0.862609239164127,0.919218786610021,0,0.127687338085188,0,1.18697658957174,0.914876436024097,0,0.279182999001381,0.56276261003168,0.763991238884051,0,0.854230084794618,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0.216491041011214,0,0.505524445014783,0,0,0.445326417194474,1.73485326766136,0.608930956624282,0.230615497256059,0,0.23517741427141,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0.599162557619291,0,0.251308704225729,0.695297280769106,0.511430914660661,0,0,1.42575109390443,0.124406970610093,0.252722758433675,4.20883711772948,8.71806967850115,2.75882525320168,4.86167750474443,3.31550599238573,5.3748834329549,3.97152532883034,4.31027932974753,6.46758426847539,1.29340795759705,1.51284864134255,1.93546236580344,1.09597866213787,0.834141747676794,0.348252166522167,0.205782136407943,1.19420560091096,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0.420579897128254,0.205809224758569,0,0,2.13288250535234,0.696710015581316,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0.329397909448022,0,0,0,0,0,0,1.51734320762465,1.37098215131675,1.1270773567308,0.203651327845314,0.775809948670503,0.49095073923223,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.651859905768103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28440471990234,0.234423373184406,0,0.252470927204373,0.315508219416257,0,0,0,0,0,0,0.292255857911312,0,0.963963949265421,0.851640511249612,3.02711526234334,1.30309567482861,1.15479086080775,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0.340439605753788,3.42116078659489,5.17434735131018,3.42939256050548,7.09360934569094,4.45922044005176,5.43011767986999,1.522324745573,0.704015124191131,0.21183207086382,0.220528398054962,0,0,0.0603129249281559,0,0.328281799490123,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,3.00519193902079,0.406638934253697,0.108005340821801,0,0,0,0,0,0,0,0,0.897099276263873,0.66183396182839,1.16670713006429,1.80823752868824,1.35164900392623,0.821500670520278,1.0416350787516,0.314578033277133,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0,0,0.183151624267265,0,0,0,0.920650473014354,0,0.171853182343688,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0.93408612825759,2.79317411380722,0.853668028770671,0.486213434136588,0.209613162627982,0.367687016900028,0.44449345560323,0.412070114477788,0.320919209591815,0.252697211763798,0.50695859978048,0,0.280924522409647,0.320125762024346,0.17230640686684,0.476293691283074,0.347652977834566,0,0.412085900803307,0.147198920134397,0.685738504770831,0,0.476872379894642,0,0.188218760830661,0,0,0,0.135804113845862,0,0.355905054372522,0.394017929502254,0.409231043169689,0.309873682371932,0,0.749431733813838,0.233931608445408,0,0,0,0 | |||
|short_description=p2@Stra6 | |||
}} |
Latest revision as of 21:52, 26 September 2015
Short description: | p2@Stra6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Stra6_5end |
Coexpression cluster: | MCL_coexpression_mm9:578 |
Association with transcript: | -4bp_to_ENSMUST00000147134, ENSMUST00000170397, NM_001162476, uc012guc.1_5end |
EntrezGene: | Stra6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 4.71e-20 | 9 |
camera-type eye | 4.71e-20 | 9 |
simple eye | 4.71e-20 | 9 |
immature eye | 4.71e-20 | 9 |
ocular region | 4.71e-20 | 9 |
visual system | 4.71e-20 | 9 |
face | 4.71e-20 | 9 |
optic cup | 4.71e-20 | 9 |
optic vesicle | 4.71e-20 | 9 |
eye primordium | 4.71e-20 | 9 |
subdivision of head | 4.83e-16 | 11 |
sense organ | 1.54e-14 | 12 |
sensory system | 1.54e-14 | 12 |
entire sense organ system | 1.54e-14 | 12 |
pituitary gland | 1.26e-13 | 8 |
gland of diencephalon | 1.26e-13 | 8 |
neuroendocrine gland | 1.26e-13 | 8 |
head | 2.87e-13 | 13 |
ectodermal placode | 2.87e-13 | 13 |
diencephalon | 1.19e-10 | 10 |
future diencephalon | 1.19e-10 | 10 |
pre-chordal neural plate | 1.30e-09 | 49 |
neurectoderm | 3.54e-08 | 64 |
neural plate | 3.54e-08 | 64 |
presumptive neural plate | 3.54e-08 | 64 |