FFCP PHASE1:Mm9::chr11:33103551..33103561,-: Difference between revisions
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|id=chr11:33103551..33103561,-
|short_description=p4@Tlx3
|description=CAGE_peak_4_at_Tlx3_5end
|association_with_transcript=26bp_to_ENSMUST00000037746,NM_019916,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=27140 | |EntrezGene=27140 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=249 | |||
|TSSclassifier=NA | |||
|UniProt=Q5SQB4 | |UniProt=Q5SQB4 | ||
|association_with_transcript=26bp_to_ENSMUST00000037746,NM_019916,uc007ikg.2_5end | |||
|cluster_id=chr11:33103551..33103561,- | |||
|description=CAGE_peak_4_at_Tlx3_5end | |||
|id=chr11:33103551..33103561,- | |||
|ontology_enrichment_celltype=CL:0000540!4.69e-12!33;CL:0000047!4.69e-12!33;CL:0000031!4.69e-12!33;CL:0000404!4.69e-12!33;CL:0000107!5.21e-11!9;CL:0002319!1.16e-09!43;CL:0000393!1.21e-09!39;CL:0000211!1.21e-09!39;CL:0000221!2.35e-09!44;CL:0000133!2.35e-09!44;CL:0002612!4.75e-08!3;CL:0000055!8.77e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,2.99e-24,3;CL:0002611,7.56e-10,2;CL:0000117,1.38e-07,23;CL:0000337,1.38e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!1.92e-18!12;UBERON:0003057!1.92e-18!12;UBERON:0002240!2.77e-14!6;UBERON:0005174!2.77e-14!6;UBERON:0001137!2.77e-14!6;UBERON:0001948!3.32e-12!5;UBERON:0002315!3.32e-12!5;UBERON:0000073!1.81e-11!75;UBERON:0001016!1.81e-11!75;UBERON:0000010!2.66e-11!11;UBERON:0002410!5.21e-11!9;UBERON:0001017!8.33e-11!73;UBERON:0005743!8.33e-11!73;UBERON:0004121!2.15e-09!102;UBERON:0000924!2.15e-09!102;UBERON:0006601!2.15e-09!102;UBERON:0002257!4.75e-08!3;UBERON:0000011!6.37e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.18e-36,12;UBERON:0003057,1.18e-36,12;UBERON:0001948,7.61e-32,5;UBERON:0002315,7.61e-32,5;UBERON:0002240,1.04e-26,6;UBERON:0005174,1.04e-26,6;UBERON:0001137,1.04e-26,6;UBERON:0002257,2.99e-24,3;UBERON:0002037,1.74e-18,4;UBERON:0002680,1.74e-18,4;UBERON:0001895,1.74e-18,4;UBERON:0010092,1.74e-18,4;UBERON:0006215,1.74e-18,4;UBERON:0004733,1.08e-12,6;UBERON:0004732,1.08e-12,6;UBERON:0002028,1.08e-12,6;UBERON:0007277,1.08e-12,6;UBERON:0002256,7.56e-10,2;UBERON:0001049,5.37e-09,52;UBERON:0005068,5.37e-09,52;UBERON:0006241,5.37e-09,52;UBERON:0007135,5.37e-09,52;UBERON:0000073,1.10e-08,54;UBERON:0000489,3.06e-08,21;UBERON:0002346,2.08e-07,64;UBERON:0003075,2.08e-07,64;UBERON:0007284,2.08e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,1.71390590642282,0.441737081903227,0,0,0,0,0,0,0,0,0,0.558365998002762,0,0,1.76777151284201,0.427115042397309,4.47358669980721,0,0.226714680320357,0,0,0,0,0,0,0,0,0.259786004602869,0,0,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,2.34224637609238,3.14170060220183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0.315508219416257,0,0.646270193198397,0.238968797952552,0.222798674082394,0.566153061577665,0,0.292255857911312,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0.356737635204141,0,0,0,0,0,0,0.161464426695906,0,0,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0.399024873401031,0.341467211508268,0,0,0.367687016900028,0,0,0.64183841918363,0,0,0,0.0936415074698824,0.128050304809739,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0,0.188218760830661,0.25384382367503,0,0,0,0,0.237270036248348,0,0,0,0.385813221962283,0.249810577937946,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,1.71390590642282,0.441737081903227,0,0,0,0,0,0,0,0,0,0.558365998002762,0,0,1.76777151284201,0.427115042397309,4.47358669980721,0,0.226714680320357,0,0,0,0,0,0,0,0,0.259786004602869,0,0,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,2.34224637609238,3.14170060220183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0.315508219416257,0,0.646270193198397,0.238968797952552,0.222798674082394,0.566153061577665,0,0.292255857911312,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0.356737635204141,0,0,0,0,0,0,0.161464426695906,0,0,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0.399024873401031,0.341467211508268,0,0,0.367687016900028,0,0,0.64183841918363,0,0,0,0.0936415074698824,0.128050304809739,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0,0.188218760830661,0.25384382367503,0,0,0,0,0.237270036248348,0,0,0,0.385813221962283,0.249810577937946,0,0,0,0,0 | ||
|short_description=p4@Tlx3 | |||
}} | }} |
Latest revision as of 07:42, 27 September 2015
Short description: | p4@Tlx3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tlx3_5end |
Coexpression cluster: | MCL_coexpression_mm9:249 |
Association with transcript: | 26bp_to_ENSMUST00000037746, NM_019916, uc007ikg.2_5end |
EntrezGene: | Tlx3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 2.99e-24 | 3 |
neuron of the dorsal spinal cord | 7.56e-10 | 2 |
CNS neuron (sensu Vertebrata) | 1.38e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.38e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 1.18e-36 | 12 |
chordal neural plate | 1.18e-36 | 12 |
regional part of spinal cord | 7.61e-32 | 5 |
gray matter of spinal cord | 7.61e-32 | 5 |
spinal cord | 1.04e-26 | 6 |
dorsal region element | 1.04e-26 | 6 |
dorsum | 1.04e-26 | 6 |
ventral horn of spinal cord | 2.99e-24 | 3 |
cerebellum | 1.74e-18 | 4 |
regional part of metencephalon | 1.74e-18 | 4 |
metencephalon | 1.74e-18 | 4 |
future metencephalon | 1.74e-18 | 4 |
rhombic lip | 1.74e-18 | 4 |
segmental subdivision of hindbrain | 1.08e-12 | 6 |
segmental subdivision of nervous system | 1.08e-12 | 6 |
hindbrain | 1.08e-12 | 6 |
presumptive hindbrain | 1.08e-12 | 6 |
dorsal horn of spinal cord | 7.56e-10 | 2 |
neural tube | 5.37e-09 | 52 |
neural rod | 5.37e-09 | 52 |
future spinal cord | 5.37e-09 | 52 |
neural keel | 5.37e-09 | 52 |
regional part of nervous system | 1.10e-08 | 54 |
cavitated compound organ | 3.06e-08 | 21 |
neurectoderm | 2.08e-07 | 64 |
neural plate | 2.08e-07 | 64 |
presumptive neural plate | 2.08e-07 | 64 |