FFCP PHASE1:Mm9::chr8:73242433..73242448,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=100502950|HGNC=|MCL_coexpression_id=306|UniProt=|association_with_transcript=0bp_to_NM_001195253,uc009mbf.2,uc012gfe.1_5end|description=CAGE_peak_1_at_Gm3336_5end|id=chr8:73242433..73242448,+|ontology_enrichment_celltype=CL:0002563!1.39e-07!9;CL:0002251!1.39e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,1.67e-13,9;CL:0002251,1.67e-13,9;CL:0000239,6.19e-10,6;CL:0000677,6.19e-10,6;CL:0000584,6.19e-10,6;CL:0000075,2.25e-08,7;CL:0000066,4.63e-08,25;CL:0002076,2.67e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!2.18e-16!59;UBERON:0000344!2.68e-12!15;UBERON:0001242!8.76e-11!13;UBERON:0000060!8.76e-11!13;UBERON:0001262!8.76e-11!13;UBERON:0004786!8.76e-11!13;UBERON:0000160!1.44e-10!43;UBERON:0004923!1.51e-10!24;UBERON:0001007!1.40e-09!128;UBERON:0001555!1.40e-09!128;UBERON:0007026!1.40e-09!128;UBERON:0004119!4.49e-09!130;UBERON:0000925!4.49e-09!130;UBERON:0006595!4.49e-09!130;UBERON:0004921!1.20e-08!126;UBERON:0004185!1.20e-08!126;UBERON:0007023!9.62e-08!51;UBERON:0003350!1.39e-07!9;UBERON:0004808!1.39e-07!9;UBERON:0001277!1.39e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.08e-40,47;UBERON:0000160,2.22e-35,31;UBERON:0000344,7.43e-23,15;UBERON:0001242,7.57e-20,13;UBERON:0001262,7.57e-20,13;UBERON:0004786,7.57e-20,13;UBERON:0004923,2.58e-14,24;UBERON:0001007,9.46e-14,116;UBERON:0001555,9.46e-14,116;UBERON:0007026,9.46e-14,116;UBERON:0003350,1.67e-13,9;UBERON:0004808,1.67e-13,9;UBERON:0001277,1.67e-13,9;UBERON:0004119,2.47e-13,118;UBERON:0000925,2.47e-13,118;UBERON:0006595,2.47e-13,118;UBERON:0004921,4.22e-12,114;UBERON:0000485,1.13e-10,11;UBERON:0002108,2.02e-07,4;UBERON:0000945,6.06e-07,16;UBERON:0010039,6.06e-07,16|phase1_expression=0,18.8446720125255,11.8299802241279,74.1037317701734,63.1128619732397,10.9121526742728,12.3814699515629,0,0,0,0,0,0,0,0.666219523631325,0.404950534779652,0,0.157731082679119,0.411343300817216,0,5.52781385981954,0.297872853602656,0,38.8781587387978,39.6878056246204,22.9692785646008,19.3842898271584,19.39241094173,188.883278939636,52.1702368603057,20.399206980288,0,0,0,7.22129049378186,14.7948834369058,7.14592746918292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0.860423876981386,0,1.07940638327563,0.649776417447669,0,5.89866564553358,0,0,0,0,0,0,0,0,0,0,15.4148237620731,2.58937883647172,0.148442139064825,0,0,0,0,0,0,0.247194967734374,0.144599356919912,0,0.161766849947409,0,0,190.119596442485,0,0,48.2813834344238,0,0,0,0.299581278809645,0,0,0.173824320192276,0,0.20778804455956,0,0,0,0.505445516867349,10.1012090825508,0,0,0,0,0,0,0,0,0,0,0,0,0,0.696504333044333,1.02891068203972,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,74.6746449543383,66.9059933658767,0,0,0.644337306610467,1.4117846723634,2.66853652613844,7.79925067061493,11.3886974770683,2.63518327558417,5.7807098024062,9.15199771389294,7.01870713628832,17.9763881730844,50.3601656208038,40.6248197438909,0.569003702859245,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0.147610147979602,0.470996183524124,0.616985819609003,0.592905254174298,0,0,0,0,0,0,0,0.324270453550071,0,0,0.372140947668503,0.312037673114561,0.505157755894224,0.358794827043824,0,1.10851914099963,0,0,0.169745085775188,0,0.167506257441816,0,0,0,0,0,0.491589944147214,0.863424909329478,0.578596234326046,0,0,20.6540994667995,1.10374698521893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0,1.31976098378028,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0.220528398054962,0.16488625294148,0.161464426695906,1.38719727334758,2.74556391207214,1.47726809770555,10.7847909553045,0.370850604021019,0.683483523191411,0,0.370389054739423,0.188368457004691,1.36694227721025,0.457556346413045,0.169978429993855,0,0.138199973804424,374.230882261924,0,0.203319467126849,1.40406943068342,8.36353184057875,11.5732158785474,55.698975056931,50.9145287268069,91.0910678104423,132.596117677504,0,0,0,0.165458490457098,0.194451188344048,0,0.337912250981556,0,0.13020438484395,0.314578033277133,0.241584120826006,0,0.316011120628178,0,0.102710957164827,0.129920822977795,0,0,0,0,0.100966449948148,0,0.100826185136841,0.194915761479505,0.0962118416403295,0.233753804363138,0.680191150845634,0.665957860122194,0.179427713218951,0,0.19318959403219,4.87974436173073,11.1722490803032,0.857473516316263,0,0,0,0.572895513439397,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0.183843508450014,0.666740183404846,0,0.320919209591815,0.758091635291392,0.50695859978048,0,0.280924522409647,0.384150914429216,0.114870937911227,0.476293691283074,0.231768651889711,0.192909220463705,0.412085900803307,0.441596760403192,0.685738504770831,0.354951612318675,0.238436189947321,0.436039249896986,0.470546902076653,0.25384382367503,0.365855945745545,0,0.543216455383447,0,0,0.29551344712669,0,0,0.192906610981141,0.249810577937946,1.16965804222704,0.429742108096597,0.382576664137687,1.10295709559758,0|short_description=p1@Gm3336}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100502950 | |||
|HGNC= | |||
|MCL_coexpression_id=306 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NM_001195253,uc009mbf.2,uc012gfe.1_5end | |||
|cluster_id=chr8:73242433..73242448,+ | |||
|description=CAGE_peak_1_at_Gm3336_5end | |||
|id=chr8:73242433..73242448,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.39e-07!9;CL:0002251!1.39e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.67e-13,9;CL:0002251,1.67e-13,9;CL:0000239,6.19e-10,6;CL:0000677,6.19e-10,6;CL:0000584,6.19e-10,6;CL:0000075,2.25e-08,7;CL:0000066,4.63e-08,25;CL:0002076,2.67e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.18e-16!59;UBERON:0000344!2.68e-12!15;UBERON:0001242!8.76e-11!13;UBERON:0000060!8.76e-11!13;UBERON:0001262!8.76e-11!13;UBERON:0004786!8.76e-11!13;UBERON:0000160!1.44e-10!43;UBERON:0004923!1.51e-10!24;UBERON:0001007!1.40e-09!128;UBERON:0001555!1.40e-09!128;UBERON:0007026!1.40e-09!128;UBERON:0004119!4.49e-09!130;UBERON:0000925!4.49e-09!130;UBERON:0006595!4.49e-09!130;UBERON:0004921!1.20e-08!126;UBERON:0004185!1.20e-08!126;UBERON:0007023!9.62e-08!51;UBERON:0003350!1.39e-07!9;UBERON:0004808!1.39e-07!9;UBERON:0001277!1.39e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.08e-40,47;UBERON:0000160,2.22e-35,31;UBERON:0000344,7.43e-23,15;UBERON:0001242,7.57e-20,13;UBERON:0001262,7.57e-20,13;UBERON:0004786,7.57e-20,13;UBERON:0004923,2.58e-14,24;UBERON:0001007,9.46e-14,116;UBERON:0001555,9.46e-14,116;UBERON:0007026,9.46e-14,116;UBERON:0003350,1.67e-13,9;UBERON:0004808,1.67e-13,9;UBERON:0001277,1.67e-13,9;UBERON:0004119,2.47e-13,118;UBERON:0000925,2.47e-13,118;UBERON:0006595,2.47e-13,118;UBERON:0004921,4.22e-12,114;UBERON:0000485,1.13e-10,11;UBERON:0002108,2.02e-07,4;UBERON:0000945,6.06e-07,16;UBERON:0010039,6.06e-07,16 | |||
|phase1_expression=0,18.8446720125255,11.8299802241279,74.1037317701734,63.1128619732397,10.9121526742728,12.3814699515629,0,0,0,0,0,0,0,0.666219523631325,0.404950534779652,0,0.157731082679119,0.411343300817216,0,5.52781385981954,0.297872853602656,0,38.8781587387978,39.6878056246204,22.9692785646008,19.3842898271584,19.39241094173,188.883278939636,52.1702368603057,20.399206980288,0,0,0,7.22129049378186,14.7948834369058,7.14592746918292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0.860423876981386,0,1.07940638327563,0.649776417447669,0,5.89866564553358,0,0,0,0,0,0,0,0,0,0,15.4148237620731,2.58937883647172,0.148442139064825,0,0,0,0,0,0,0.247194967734374,0.144599356919912,0,0.161766849947409,0,0,190.119596442485,0,0,48.2813834344238,0,0,0,0.299581278809645,0,0,0.173824320192276,0,0.20778804455956,0,0,0,0.505445516867349,10.1012090825508,0,0,0,0,0,0,0,0,0,0,0,0,0,0.696504333044333,1.02891068203972,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,74.6746449543383,66.9059933658767,0,0,0.644337306610467,1.4117846723634,2.66853652613844,7.79925067061493,11.3886974770683,2.63518327558417,5.7807098024062,9.15199771389294,7.01870713628832,17.9763881730844,50.3601656208038,40.6248197438909,0.569003702859245,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0.147610147979602,0.470996183524124,0.616985819609003,0.592905254174298,0,0,0,0,0,0,0,0.324270453550071,0,0,0.372140947668503,0.312037673114561,0.505157755894224,0.358794827043824,0,1.10851914099963,0,0,0.169745085775188,0,0.167506257441816,0,0,0,0,0,0.491589944147214,0.863424909329478,0.578596234326046,0,0,20.6540994667995,1.10374698521893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0,1.31976098378028,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0.220528398054962,0.16488625294148,0.161464426695906,1.38719727334758,2.74556391207214,1.47726809770555,10.7847909553045,0.370850604021019,0.683483523191411,0,0.370389054739423,0.188368457004691,1.36694227721025,0.457556346413045,0.169978429993855,0,0.138199973804424,374.230882261924,0,0.203319467126849,1.40406943068342,8.36353184057875,11.5732158785474,55.698975056931,50.9145287268069,91.0910678104423,132.596117677504,0,0,0,0.165458490457098,0.194451188344048,0,0.337912250981556,0,0.13020438484395,0.314578033277133,0.241584120826006,0,0.316011120628178,0,0.102710957164827,0.129920822977795,0,0,0,0,0.100966449948148,0,0.100826185136841,0.194915761479505,0.0962118416403295,0.233753804363138,0.680191150845634,0.665957860122194,0.179427713218951,0,0.19318959403219,4.87974436173073,11.1722490803032,0.857473516316263,0,0,0,0.572895513439397,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0.183843508450014,0.666740183404846,0,0.320919209591815,0.758091635291392,0.50695859978048,0,0.280924522409647,0.384150914429216,0.114870937911227,0.476293691283074,0.231768651889711,0.192909220463705,0.412085900803307,0.441596760403192,0.685738504770831,0.354951612318675,0.238436189947321,0.436039249896986,0.470546902076653,0.25384382367503,0.365855945745545,0,0.543216455383447,0,0,0.29551344712669,0,0,0.192906610981141,0.249810577937946,1.16965804222704,0.429742108096597,0.382576664137687,1.10295709559758,0 | |||
|short_description=p1@Gm3336 | |||
}} |
Latest revision as of 17:50, 25 September 2015
Short description: | p1@Gm3336 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm3336_5end |
Coexpression cluster: | MCL_coexpression_mm9:306 |
Association with transcript: | 0bp_to_NM_001195253, uc009mbf.2, uc012gfe.1_5end |
EntrezGene: | Gm3336 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.67e-13 | 9 |
epithelial cell of alimentary canal | 1.67e-13 | 9 |
brush border epithelial cell | 6.19e-10 | 6 |
gut absorptive cell | 6.19e-10 | 6 |
enterocyte | 6.19e-10 | 6 |
columnar/cuboidal epithelial cell | 2.25e-08 | 7 |
epithelial cell | 4.63e-08 | 25 |
endo-epithelial cell | 2.67e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.08e-40 | 47 |
intestine | 2.22e-35 | 31 |
mucosa | 7.43e-23 | 15 |
intestinal mucosa | 7.57e-20 | 13 |
wall of intestine | 7.57e-20 | 13 |
gastrointestinal system mucosa | 7.57e-20 | 13 |
organ component layer | 2.58e-14 | 24 |
digestive system | 9.46e-14 | 116 |
digestive tract | 9.46e-14 | 116 |
primitive gut | 9.46e-14 | 116 |
epithelium of mucosa | 1.67e-13 | 9 |
gastrointestinal system epithelium | 1.67e-13 | 9 |
intestinal epithelium | 1.67e-13 | 9 |
endoderm-derived structure | 2.47e-13 | 118 |
endoderm | 2.47e-13 | 118 |
presumptive endoderm | 2.47e-13 | 118 |
subdivision of digestive tract | 4.22e-12 | 114 |
simple columnar epithelium | 1.13e-10 | 11 |
small intestine | 2.02e-07 | 4 |
stomach | 6.06e-07 | 16 |
food storage organ | 6.06e-07 | 16 |