FFCP PHASE1:Mm9::chr11:120810028..120810060,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:120810028..120810060,+
|short_description=p4@Slc16a3
|description=CAGE_peak_4_at_Slc16a3_5end
|association_with_transcript=-306bp_to_ENSMUST00000154187_5e...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=80879 | |EntrezGene=80879 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=24 | |||
|TSSclassifier=NA | |||
|UniProt=B1ATM1 | |UniProt=B1ATM1 | ||
|association_with_transcript=-306bp_to_ENSMUST00000154187_5end | |||
|cluster_id=chr11:120810028..120810060,+ | |||
|description=CAGE_peak_4_at_Slc16a3_5end | |||
|id=chr11:120810028..120810060,+ | |||
|ontology_enrichment_celltype=CL:0000239!7.17e-13!6;CL:0000677!7.17e-13!6;CL:0000212!7.17e-13!6;CL:0000584!7.17e-13!6;CL:0000075!6.74e-11!7;CL:0002563!2.88e-08!9;CL:0002251!2.88e-08!9;CL:0000473!4.49e-07!3;CL:0000627!4.49e-07!3;CL:0000682!4.49e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.06e-17,6;CL:0000677,1.06e-17,6;CL:0000584,1.06e-17,6;CL:0000075,3.78e-15,7;CL:0000682,1.18e-12,3;CL:0002563,9.74e-12,9;CL:0002251,9.74e-12,9;CL:0000066,1.26e-09,25;CL:0002076,6.09e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.03e-20!43;UBERON:0000344!1.90e-18!15;UBERON:0005409!9.06e-16!59;UBERON:0001242!4.96e-15!13;UBERON:0000060!4.96e-15!13;UBERON:0001262!4.96e-15!13;UBERON:0004786!4.96e-15!13;UBERON:0004923!3.74e-12!24;UBERON:0003350!2.88e-08!9;UBERON:0004808!2.88e-08!9;UBERON:0001277!2.88e-08!9;UBERON:0000331!6.47e-07!3;UBERON:0002116!6.47e-07!3;UBERON:0001204!6.47e-07!3;UBERON:0001168!6.47e-07!3;UBERON:0004119!8.21e-07!130;UBERON:0000925!8.21e-07!130;UBERON:0006595!8.21e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.49e-31,31;UBERON:0000344,2.41e-31,15;UBERON:0001242,1.20e-24,13;UBERON:0001262,1.20e-24,13;UBERON:0004786,1.20e-24,13;UBERON:0005409,6.93e-20,47;UBERON:0004923,6.33e-19,24;UBERON:0002108,4.31e-16,4;UBERON:0000331,2.45e-12,3;UBERON:0002116,2.45e-12,3;UBERON:0001204,2.45e-12,3;UBERON:0001168,2.45e-12,3;UBERON:0003350,9.74e-12,9;UBERON:0004808,9.74e-12,9;UBERON:0001277,9.74e-12,9;UBERON:0000485,1.46e-09,11;UBERON:0001962,1.08e-08,2;UBERON:0001961,1.08e-08,2;UBERON:0001744,1.08e-08,2;UBERON:0001007,1.77e-08,116;UBERON:0001555,1.77e-08,116;UBERON:0007026,1.77e-08,116;UBERON:0004119,2.80e-08,118;UBERON:0000925,2.80e-08,118;UBERON:0006595,2.80e-08,118 | |||
|phase1_expression=0,7.67745896806594,5.45999087267443,13.3084252975005,14.0250804384977,1.17515490338323,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71987118748791,1.37645568640302,5.7423196411502,1.7230479846363,1.50829862880122,3.04037471130198,2.77233142735924,1.33038306393183,0,0,0,0,0,0,0,0,0,0,1.36609096991689,0.971020706062307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32094171771169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0,0,0,9.58214470653014,5.02456076660734,0,0,0,0,0.22237804384487,0.380451252225118,4.74529061544512,0.823494773620054,0.502670417600539,0.397912944082302,0.19496408711912,2.69645822596266,4.53889904736858,4.18196673834171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,4.08073171281791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167884616364078,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0,0.0574354689556133,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0,0,0 | |phase1_expression=0,7.67745896806594,5.45999087267443,13.3084252975005,14.0250804384977,1.17515490338323,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71987118748791,1.37645568640302,5.7423196411502,1.7230479846363,1.50829862880122,3.04037471130198,2.77233142735924,1.33038306393183,0,0,0,0,0,0,0,0,0,0,1.36609096991689,0.971020706062307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32094171771169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0,0,0,9.58214470653014,5.02456076660734,0,0,0,0,0.22237804384487,0.380451252225118,4.74529061544512,0.823494773620054,0.502670417600539,0.397912944082302,0.19496408711912,2.69645822596266,4.53889904736858,4.18196673834171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,4.08073171281791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167884616364078,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0,0.0574354689556133,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0,0,0 | ||
|short_description=p4@Slc16a3 | |||
}} | }} |
Latest revision as of 03:37, 27 September 2015
Short description: | p4@Slc16a3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Slc16a3_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | -306bp_to_ENSMUST00000154187_5end |
EntrezGene: | Slc16a3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.06e-17 | 6 |
gut absorptive cell | 1.06e-17 | 6 |
enterocyte | 1.06e-17 | 6 |
columnar/cuboidal epithelial cell | 3.78e-15 | 7 |
M cell of gut | 1.18e-12 | 3 |
intestinal epithelial cell | 9.74e-12 | 9 |
epithelial cell of alimentary canal | 9.74e-12 | 9 |
epithelial cell | 1.26e-09 | 25 |
endo-epithelial cell | 6.09e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.49e-31 | 31 |
mucosa | 2.41e-31 | 15 |
intestinal mucosa | 1.20e-24 | 13 |
wall of intestine | 1.20e-24 | 13 |
gastrointestinal system mucosa | 1.20e-24 | 13 |
gastrointestinal system | 6.93e-20 | 47 |
organ component layer | 6.33e-19 | 24 |
small intestine | 4.31e-16 | 4 |
ileal mucosa | 2.45e-12 | 3 |
ileum | 2.45e-12 | 3 |
mucosa of small intestine | 2.45e-12 | 3 |
wall of small intestine | 2.45e-12 | 3 |
epithelium of mucosa | 9.74e-12 | 9 |
gastrointestinal system epithelium | 9.74e-12 | 9 |
intestinal epithelium | 9.74e-12 | 9 |
simple columnar epithelium | 1.46e-09 | 11 |
gut-associated lymphoid tissue | 1.08e-08 | 2 |
mucosa-associated lymphoid tissue | 1.08e-08 | 2 |
lymphoid tissue | 1.08e-08 | 2 |
digestive system | 1.77e-08 | 116 |
digestive tract | 1.77e-08 | 116 |
primitive gut | 1.77e-08 | 116 |
endoderm-derived structure | 2.80e-08 | 118 |
endoderm | 2.80e-08 | 118 |
presumptive endoderm | 2.80e-08 | 118 |