FFCP PHASE1:Mm9::chr7:57165440..57165441,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=104245|HGNC=|MCL_coexpression_id=353|UniProt=B2RQX9|association_with_transcript=-74bp_to_ENSMUST00000056442_5end|description=CAGE_peak_13_at_Slc6a5_5end|id=chr7:57165440..57165441,+|ontology_enrichment_celltype=CL:0002612!7.32e-16!3;CL:0002611!1.54e-11!2;CL:0000117!1.50e-07!23;CL:0000337!1.50e-07!23|ontology_enrichment_celltype_v019_2=CL:0002611,9.50e-23,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003076!1.19e-33!12;UBERON:0003057!1.19e-33!12;UBERON:0002240!1.76e-30!6;UBERON:0005174!1.76e-30!6;UBERON:0001137!1.76e-30!6;UBERON:0001948!9.99e-26!5;UBERON:0002315!9.99e-26!5;UBERON:0002257!7.32e-16!3;UBERON:0002298!8.95e-14!6;UBERON:0001896!1.54e-11!2;UBERON:0002256!1.54e-11!2;UBERON:0005290!1.54e-11!2;UBERON:0010096!1.54e-11!2;UBERON:0001049!2.74e-10!52;UBERON:0005068!2.74e-10!52;UBERON:0006241!2.74e-10!52;UBERON:0007135!2.74e-10!52;UBERON:0002346!1.54e-08!71;UBERON:0003075!1.54e-08!71;UBERON:0007284!1.54e-08!71;UBERON:0000489!2.07e-08!21;UBERON:0004733!2.33e-08!6;UBERON:0004732!2.33e-08!6;UBERON:0002028!2.33e-08!6;UBERON:0007277!2.33e-08!6;UBERON:0001017!7.60e-07!73;UBERON:0005743!7.60e-07!73|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.75e-23,2;UBERON:0002298,5.75e-23,2;UBERON:0005290,5.75e-23,2;UBERON:0010096,5.75e-23,2;UBERON:0002256,9.50e-23,2;UBERON:0003076,1.13e-15,12;UBERON:0003057,1.13e-15,12;UBERON:0001948,5.59e-10,5;UBERON:0002315,5.59e-10,5;UBERON:0004733,1.29e-08,6;UBERON:0004732,1.29e-08,6;UBERON:0002028,1.29e-08,6;UBERON:0007277,1.29e-08,6;UBERON:0002240,1.52e-08,6;UBERON:0005174,1.52e-08,6;UBERON:0001137,1.52e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14260393761521,0.662605622854841,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0.589257170947335,0.711858403995515,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,0.299581278809645,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,1.28932855251423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p13@Slc6a5}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104245 | |||
|HGNC= | |||
|MCL_coexpression_id=353 | |||
|TSSclassifier=NA | |||
|UniProt=B2RQX9 | |||
|association_with_transcript=-74bp_to_ENSMUST00000056442_5end | |||
|cluster_id=chr7:57165440..57165441,+ | |||
|description=CAGE_peak_13_at_Slc6a5_5end | |||
|id=chr7:57165440..57165441,+ | |||
|ontology_enrichment_celltype=CL:0002612!7.32e-16!3;CL:0002611!1.54e-11!2;CL:0000117!1.50e-07!23;CL:0000337!1.50e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002611,9.50e-23,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!1.19e-33!12;UBERON:0003057!1.19e-33!12;UBERON:0002240!1.76e-30!6;UBERON:0005174!1.76e-30!6;UBERON:0001137!1.76e-30!6;UBERON:0001948!9.99e-26!5;UBERON:0002315!9.99e-26!5;UBERON:0002257!7.32e-16!3;UBERON:0002298!8.95e-14!6;UBERON:0001896!1.54e-11!2;UBERON:0002256!1.54e-11!2;UBERON:0005290!1.54e-11!2;UBERON:0010096!1.54e-11!2;UBERON:0001049!2.74e-10!52;UBERON:0005068!2.74e-10!52;UBERON:0006241!2.74e-10!52;UBERON:0007135!2.74e-10!52;UBERON:0002346!1.54e-08!71;UBERON:0003075!1.54e-08!71;UBERON:0007284!1.54e-08!71;UBERON:0000489!2.07e-08!21;UBERON:0004733!2.33e-08!6;UBERON:0004732!2.33e-08!6;UBERON:0002028!2.33e-08!6;UBERON:0007277!2.33e-08!6;UBERON:0001017!7.60e-07!73;UBERON:0005743!7.60e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.75e-23,2;UBERON:0002298,5.75e-23,2;UBERON:0005290,5.75e-23,2;UBERON:0010096,5.75e-23,2;UBERON:0002256,9.50e-23,2;UBERON:0003076,1.13e-15,12;UBERON:0003057,1.13e-15,12;UBERON:0001948,5.59e-10,5;UBERON:0002315,5.59e-10,5;UBERON:0004733,1.29e-08,6;UBERON:0004732,1.29e-08,6;UBERON:0002028,1.29e-08,6;UBERON:0007277,1.29e-08,6;UBERON:0002240,1.52e-08,6;UBERON:0005174,1.52e-08,6;UBERON:0001137,1.52e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14260393761521,0.662605622854841,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0.589257170947335,0.711858403995515,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,0.299581278809645,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,1.28932855251423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p13@Slc6a5 | |||
}} |
Latest revision as of 23:18, 26 September 2015
Short description: | p13@Slc6a5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_Slc6a5_5end |
Coexpression cluster: | MCL_coexpression_mm9:353 |
Association with transcript: | -74bp_to_ENSMUST00000056442_5end |
EntrezGene: | Slc6a5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the dorsal spinal cord | 9.50e-23 | 2 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 5.75e-23 | 2 |
brainstem | 5.75e-23 | 2 |
myelencephalon | 5.75e-23 | 2 |
future myelencephalon | 5.75e-23 | 2 |
dorsal horn of spinal cord | 9.50e-23 | 2 |
posterior neural tube | 1.13e-15 | 12 |
chordal neural plate | 1.13e-15 | 12 |
regional part of spinal cord | 5.59e-10 | 5 |
gray matter of spinal cord | 5.59e-10 | 5 |
segmental subdivision of hindbrain | 1.29e-08 | 6 |
segmental subdivision of nervous system | 1.29e-08 | 6 |
hindbrain | 1.29e-08 | 6 |
presumptive hindbrain | 1.29e-08 | 6 |
spinal cord | 1.52e-08 | 6 |
dorsal region element | 1.52e-08 | 6 |
dorsum | 1.52e-08 | 6 |