FFCP PHASE1:Hg19::chr7:8302164..8302196,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3382 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5343 | |||
|TSSclassifier=strong | |||
|UniProt=Q05084,C9J3Y4,Q96HG3 | |||
|association_with_transcript=0bp_to_ENST00000406470,ENST00000447326,NM_004968,uc003srq.2,uc003srr.2,uc003srs.1,uc010kts.2_5end | |||
|cluster_id=chr7:8302164..8302196,- | |||
|description=CAGE_peak_2_at_ICA1_5end | |||
|id=chr7:8302164..8302196,- | |||
|ontology_enrichment_celltype=CL:0000066!7.26e-13!254;CL:0000082!4.39e-08!19;CL:0002076!2.53e-07!43;CL:0000039!6.25e-07!7;CL:0000586!6.25e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.58e-10;7!CL:0000586;3.58e-10;7!CL:0002322;7.48e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.81e-10,7;CL:0000586,2.81e-10,7;CL:0002322,8.57e-08,5;CL:0000066,1.80e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0001041;3.22e-08;30!UBERON:0008947;3.39e-07;29!UBERON:0009117;5.47e-07;10!UBERON:0005564;5.47e-07;10 | |||
|ontology_enrichment_disease=DOID:305!4.05e-19!106;DOID:0050687!2.41e-14!143;DOID:299!1.30e-09!25;DOID:0050615!1.84e-08!16;DOID:1324!1.20e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:299;2.38e-12;25!DOID:0050615;2.49e-08;16!DOID:305;1.23e-07;106!DOID:1324;3.42e-07;15!DOID:5093;3.90e-07;4!DOID:1612;3.90e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.83e-17,106;DOID:0050687,2.87e-15,143;DOID:299,2.41e-12,25;DOID:0050615,2.50e-08,16;DOID:1324,3.43e-07,15;DOID:5093,4.43e-07,4;DOID:1612,4.43e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.10e-23!115;UBERON:0004119!1.15e-13!169;UBERON:0000925!1.15e-13!169;UBERON:0006595!1.15e-13!169;UBERON:0004921!2.56e-13!129;UBERON:0004185!2.56e-13!129;UBERON:0000464!7.78e-13!104;UBERON:0001049!2.76e-12!57;UBERON:0005068!2.76e-12!57;UBERON:0006241!2.76e-12!57;UBERON:0007135!2.76e-12!57;UBERON:0001007!3.14e-12!155;UBERON:0001555!3.14e-12!155;UBERON:0007026!3.14e-12!155;UBERON:0003080!9.55e-12!42;UBERON:0002780!2.31e-11!41;UBERON:0001890!2.31e-11!41;UBERON:0006240!2.31e-11!41;UBERON:0000466!4.89e-11!126;UBERON:0002616!1.18e-10!59;UBERON:0000064!4.47e-10!219;UBERON:0002048!5.19e-10!22;UBERON:0000117!5.19e-10!22;UBERON:0000171!5.19e-10!22;UBERON:0000170!5.19e-10!22;UBERON:0005597!5.19e-10!22;UBERON:0000118!5.19e-10!22;UBERON:0000481!5.62e-10!347;UBERON:0000062!6.80e-10!511;UBERON:0000077!8.01e-10!130;UBERON:0000955!1.02e-09!69;UBERON:0006238!1.02e-09!69;UBERON:0005911!1.97e-09!82;UBERON:0001869!2.55e-09!32;UBERON:0001017!2.65e-09!82;UBERON:0005153!3.42e-09!37;UBERON:0005178!4.18e-09!34;UBERON:0002224!4.18e-09!34;UBERON:0002020!5.46e-09!34;UBERON:0003528!5.46e-09!34;UBERON:0001893!6.09e-09!34;UBERON:0004111!7.04e-09!241;UBERON:0005177!1.00e-08!107;UBERON:0005743!1.07e-08!86;UBERON:0005181!1.30e-08!35;UBERON:0002791!1.31e-08!33;UBERON:0000065!1.39e-08!53;UBERON:0000073!1.65e-08!94;UBERON:0001016!1.65e-08!94;UBERON:0001950!1.71e-08!20;UBERON:0003075!1.84e-08!86;UBERON:0007284!1.84e-08!86;UBERON:0004121!3.26e-08!169;UBERON:0002619!3.64e-08!22;UBERON:0004802!4.39e-08!19;UBERON:0000115!4.39e-08!19;UBERON:0003056!6.29e-08!61;UBERON:0001004!7.49e-08!72;UBERON:0008947!9.00e-08!38;UBERON:0003258!9.00e-08!38;UBERON:0000924!1.43e-07!173;UBERON:0006601!1.43e-07!173;UBERON:0001008!1.54e-07!45;UBERON:0002346!1.69e-07!90;UBERON:0000922!1.78e-07!612;UBERON:0003135!1.85e-07!11;UBERON:0000468!2.20e-07!659;UBERON:0000153!2.43e-07!129;UBERON:0007811!2.43e-07!129;UBERON:0005409!2.47e-07!35;UBERON:0003101!3.35e-07!22;UBERON:0000079!3.35e-07!22;UBERON:0005157!3.63e-07!51;UBERON:0006554!3.85e-07!44;UBERON:0000475!4.89e-07!365;UBERON:0001041!6.89e-07!98;UBERON:0000033!7.97e-07!123;UBERON:0009569!8.48e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.53e-11;22!UBERON:0004921;4.14e-11;33!UBERON:0003101;5.78e-10;22!UBERON:0000079;5.78e-10;22!UBERON:0003135;6.51e-10;11!UBERON:0000160;1.06e-09;17!UBERON:0000473;2.83e-09;8!UBERON:0002048;7.51e-09;22!UBERON:0000117;7.51e-09;22!UBERON:0000171;7.51e-09;22!UBERON:0000170;7.51e-09;22!UBERON:0002294;7.06e-08;7!UBERON:0001173;7.06e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,4.89e-14,118;UBERON:0001007,3.13e-13,145;UBERON:0001555,3.13e-13,145;UBERON:0007026,3.13e-13,145;UBERON:0004119,1.25e-12,160;UBERON:0000925,1.25e-12,160;UBERON:0006595,1.25e-12,160;UBERON:0011216,3.08e-11,223;UBERON:0003101,5.23e-10,22;UBERON:0000079,5.23e-10,22;UBERON:0003135,6.63e-10,11;UBERON:0007023,7.20e-10,114;UBERON:0005153,1.01e-09,37;UBERON:0005409,1.04e-09,25;UBERON:0000160,1.09e-09,17;UBERON:0000473,3.23e-09,8;UBERON:0002048,7.47e-09,22;UBERON:0000117,7.47e-09,22;UBERON:0000171,7.47e-09,22;UBERON:0000170,7.47e-09,22;UBERON:0005597,7.47e-09,22;UBERON:0000118,7.47e-09,22;UBERON:0005911,8.22e-09,82;UBERON:0005177,1.39e-07,101;UBERON:0005157,2.32e-07,47;UBERON:0005178,2.48e-07,34;UBERON:0002224,2.48e-07,34;UBERON:0005181,5.24e-07,35;UBERON:0009569,9.31e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,1.10926203050036,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.527008714158756,8.97206667159332,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,6.46460642486856,7.02407772103872,6.15827897208447,3.31715376049185,3.02785021050754,2.91981887260664,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0,0,11.8068901001389,0,0.439001141634502,0,0.703702806881416,0.277765335475589,0,0,0,0.115930404975077,0.587043471179108,0.144366447761074,0,0.190254152234598,6.3216351836742,6.00940313466411,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.7896154169214,1.60405176242628,3.68323955743585,0,0,0,0.902399225814824,1.84836809050595,0,0,0.844413031143006,0,0.170093705276516,0.215915916102139,0,0.541892875087706,0,1.78413391131527,4.98645605357235,1.11937377361089,0.219259876645935,0.522870902049801,0.256450125116389,0,0,1.64865618636356,0,0,0.574265537996172,1.95018073810956,0,0,0,0,0,0,0,0,0,0.991709492165869,1.15314040419064,0.510450849978337,5.4625201661997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,0.670302275535787,1.08890984861323,1.88287601553558,0.43050537267123,0,0.886860307073351,1.83778720165568,0,0,0,0,0,0,0.540031437238115,0,1.06824071127473,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0.677167111206413,0,0,0,0,0,0,0.166849141711909,0,0,4.92349595790849,0,0,0,17.029789177148,0,0,0,0,0.95497793895076,1.18785872333055,0.614321404198464,2.98244294329889,0.140669416410513,0,0,0,1.19548792950642,1.10513566212459,16.3756286105279,0,0,0,5.30223271769228,11.9944187032658,0,0.591860433821602,0,0,0.969332746095218,0.463840490809256,0,8.07326059364223,11.2823399995092,0.724999575434793,0.682760689712998,2.54253650292766,5.67330436243047,3.10269035917318,0,0.173624994933292,1.77148277162768,1.5677537021303,4.5774520895125,1.65868889896837,2.36438095162838,0.219385397153973,0,0,0.692552326534174,0,9.68368398429853,1.97466817701499,9.99555821682474,0,0.0915975934018623,0,0,0,0.332423363800313,1.1279783030859,0.588187602953219,1.00692952185506,0.189753732724185,0.317873157960757,3.79796516150449,1.46909527343233,5.65412285735763,0.432777279484182,4.97630965539252,3.00755719311353,6.11030144933625,0,0,0,0.067401132980677,0,1.1713222286267,0,2.54364004611717,0,2.76209081994573,4.83962864194656,0.91821828489147,0,0.901940516486955,0.414752765588989,0,0.661983911750998,0,0,20.2072777681153,0,2.60339607502696,0,0.435296032902013,1.7472666824203,0.171986032471617,0,0,0,0.484945082442097,0,0.451961481561065,0,0,0.823040347426423,6.2576442475137,3.84762337207362,3.84215390530835,0.999048047910651,6.62815918908888,0,0.171594997861965,0,0.745515213392595,3.29971648463514,0.135904206073614,0.209205692624666,0,0,0.600420288709789,0.136905378891993,0,0,0,0.558564802544508,1.3749625440701,0,1.99679000498991,1.28767814440971,1.11585728720936,0.806201669840715,0,12.8145544480199,0,0,0,0.0984274815147488,0,0,0.544813624446302,6.10861964167073,6.60189295666722,3.73896304226267,1.1248694577575,0.77380195455795,0.668245123238271,0,3.15222829196793,3.56691199317987,0.633602019116439,0.537862017998534,3.26255835443057,0,0,3.051222451857,0,0,0,0,0.492555124496034,0,0,0,0,0.517131825446202,0.26446520348538,4.96151829864555,13.3914854240168,1.81538601365081,6.9169894243853,3.31391244277756,0,0.197611631897944,0,0.638341257770182,0,0,0,0,11.6220031225173,1.77213635993397,0.976210119215705,0.250381861413,0,0.110929051536852,0.620964029413834,0.138348634936231,0,0,0,0,7.02502358710322,6.81128834470878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.643324774124777,0,0,0,0,0,0,0.657852148736121,0,0,0,0,0,0,0.138258436151731,0,0,0.163565394255844,0,0,2.53574548030352,0,0,0.172214979660816,0,0,1.81843360035278,0,2.81367616868034,4.744291701454,0,20.9682505328667,0,0,0,0,0,0,32.0228299314188,0,0,1.28458450192919,1.41696576325585,0.798169295285756,0.41023272848151,0.504143392443436,0.691572524642179,0.484426936895553,0,0,2.35939446695481,0,0,0,0,0,0.0752103283492573,0,48.4538686964517,2.09525355585138,0,14.0463281906193,0.607838261565552,0.781078098613847,0,0.824405532520789,0.546974809018219,15.8994752388583,0.496211178389294,0,1.66091155931474,0.535701835878287,0,17.6020025228623,11.383109567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| |||
|short_description=p2@ICA1 | |||
}} |
Latest revision as of 19:23, 19 September 2015
Short description: | p2@ICA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ICA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000406470, ENST00000447326, NM_004968, uc003srq.2, uc003srr.2, uc003srs.1, uc010kts.2_5end |
EntrezGene: | ICA1 |
HGNC: | 5343 |
UniProt: | Q05084C9J3Y4Q96HG3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.81e-10 | 7 |
germ cell | 2.81e-10 | 7 |
embryonic stem cell | 8.57e-08 | 5 |
epithelial cell | 1.80e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 4.89e-14 | 118 |
digestive system | 3.13e-13 | 145 |
digestive tract | 3.13e-13 | 145 |
primitive gut | 3.13e-13 | 145 |
endoderm-derived structure | 1.25e-12 | 160 |
endoderm | 1.25e-12 | 160 |
presumptive endoderm | 1.25e-12 | 160 |
organ system subdivision | 3.08e-11 | 223 |
male organism | 5.23e-10 | 22 |
male reproductive system | 5.23e-10 | 22 |
male reproductive organ | 6.63e-10 | 11 |
adult organism | 7.20e-10 | 114 |
epithelial bud | 1.01e-09 | 37 |
gastrointestinal system | 1.04e-09 | 25 |
intestine | 1.09e-09 | 17 |
testis | 3.23e-09 | 8 |
lung | 7.47e-09 | 22 |
respiratory tube | 7.47e-09 | 22 |
respiration organ | 7.47e-09 | 22 |
pair of lungs | 7.47e-09 | 22 |
lung primordium | 7.47e-09 | 22 |
lung bud | 7.47e-09 | 22 |
endo-epithelium | 8.22e-09 | 82 |
trunk region element | 1.39e-07 | 101 |
epithelial fold | 2.32e-07 | 47 |
thoracic cavity element | 2.48e-07 | 34 |
thoracic cavity | 2.48e-07 | 34 |
thoracic segment organ | 5.24e-07 | 35 |
subdivision of trunk | 9.31e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.83e-17 | 106 |
cell type cancer | 2.87e-15 | 143 |
adenocarcinoma | 2.41e-12 | 25 |
respiratory system cancer | 2.50e-08 | 16 |
lung cancer | 3.43e-07 | 15 |
thoracic cancer | 4.43e-07 | 4 |
breast cancer | 4.43e-07 | 4 |