FFCP PHASE1:Mm9::chr19:6400523..6400559,+: Difference between revisions
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{{FFCP|EntrezGene=19395|HGNC=|MCL_coexpression_id=90|UniProt=D3YZP1,D3YXD6|association_with_transcript=0bp_to_ENSMUST00000127021,ENSMUST00000145611,ENSMUST00000146831_5end|description=CAGE_peak_4_at_Rasgrp2_5end|id=chr19:6400523..6400559,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000988,6.40e-09,32;CL:0002032,6.40e-09,32;CL:0000037,6.40e-09,32;CL:0000837,6.40e-09,32;CL:0000791,6.71e-08,9;CL:0000789,6.71e-08,9;CL:0002420,6.71e-08,9;CL:0002419,6.71e-08,9;CL:0000790,6.71e-08,9;CL:0000034,2.08e-07,97;CL:0000838,2.75e-07,12;CL:0000723,3.58e-07,91;CL:0000048,3.58e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.82e-09!34;UBERON:0001049!1.58e-07!52;UBERON:0005068!1.58e-07!52;UBERON:0006241!1.58e-07!52;UBERON:0007135!1.58e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.32e-14,34;UBERON:0000073,6.09e-14,54;UBERON:0001049,1.55e-13,52;UBERON:0005068,1.55e-13,52;UBERON:0006241,1.55e-13,52;UBERON:0007135,1.55e-13,52;UBERON:0001017,8.92e-11,73;UBERON:0001016,2.92e-10,75;UBERON:0002021,2.97e-10,10;UBERON:0000411,2.97e-10,10;UBERON:0001950,2.97e-10,10;UBERON:0002346,1.47e-09,64;UBERON:0003075,1.47e-09,64;UBERON:0007284,1.47e-09,64;UBERON:0002240,3.76e-09,6;UBERON:0005174,3.76e-09,6;UBERON:0001137,3.76e-09,6;UBERON:0000955,4.42e-09,47;UBERON:0006238,4.42e-09,47;UBERON:0003528,6.93e-09,29;UBERON:0002791,6.93e-09,29;UBERON:0001893,6.93e-09,29;UBERON:0002616,2.17e-08,46;UBERON:0003080,2.20e-08,40;UBERON:0001948,2.27e-08,5;UBERON:0002315,2.27e-08,5;UBERON:0002780,1.35e-07,39;UBERON:0001890,1.35e-07,39;UBERON:0006240,1.35e-07,39;UBERON:0010371,1.73e-07,73|phase1_expression=0,0,0,0,0,0,0,3.22808308603941,3.51971805379167,2.80877431586392,0.171217968225505,0,6.50562773738582,7.25589340077678,0.333109761815663,0.809901069559304,0,2.5236973228659,3.70208970735495,2.97072756258621,1.36069264241712,0.496454756004426,0.261199789138935,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4409111995798,3.906676722619,2.09409497589519,4.70585190424811,3.41522742479223,5.82612423637384,0,0,0,0,0,0,0,0,0,4.36234775750115,11.6057942721815,8.73843877770406,0,0,0.515672092277442,0,1.5869729378161,0.633831403506179,0,0.889294796111139,0,0,0,0,0,0.103689612308478,0,0,8.2838785477103,13.4729809980484,0.61245399607477,0.575072826109418,0.919218786610021,2.20231761998777,1.65993539510744,0.921639199537461,0.263772575460388,0.182975287204819,0,3.07101298901519,2.8138130501584,2.59757021220577,10.9012576625257,13.2405663143166,2.42319279572891,0,0,0.289864488701678,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.11418387971906,1.03575153458869,0.29688427812965,0,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0.433798070759735,1.76922110389975,0.323533699894818,0.441683036920787,0,0,0.292780797011547,0.41889341362691,0.255457055208591,1.55759661857696,1.79970819298022,2.03312363316904,3.89455662452539,40.7175536508578,14.0732874366408,3.30266208365325,6.13717097592793,3.1168206683934,13.7905073607594,0.101839363850316,0.746441823660558,0.505445516867349,0,0,0,0,0,0.204109497453984,0.384341160854549,0.0937017245597288,0,0,0,0.175951124163949,0,0,0,0,0,1.40442637462647,3.86021860672073,3.12579849335152,0,0,0,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0.243206428637567,0.438599962275997,0.219550115291051,0.268412837520744,0.210289948564127,1.13195073617213,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0.295220295959204,0.156998727841375,0.370191491765402,0,0.166845105716094,0.196558995113203,0.224862112384854,0.608580364165509,0.241177159752417,0.25462585178142,0.287696137450811,0.648540907100142,0.549122826376163,0,0,0,0,0,0,0.923765950833023,0,0,0.169745085775188,0,0,0.476087281772027,0.585400943573396,0.315270288212382,0,0.637819074629948,1.14704320301017,0.518054945597687,0.578596234326046,0,0,0,0,2.0871576698413,1.52375192569864,0,0,0,0,0,0,0,0,0,0,0,2.57057053137446,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0.316036757935816,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0.21183207086382,0,0,0.322928853391811,0.120625849856312,0,0.164140899745061,0,1.48340241608408,1.36696704638282,0.619160603889667,0.555583582109135,0.565105371014073,1.0935538217682,0.686334519619568,1.18984900995699,0.839708713941948,1.24379976423981,0,0,0,0,0,0,0.134864346384821,0.165306911450672,0.26175594198403,0.129614973291793,0.621339313086926,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0.419437377702843,0,0,0.316011120628178,0,0.102710957164827,0.77952493786677,0,0.198681354781265,0.841368146639782,1.18151621739662,0.908698049533329,0.838274873204998,0.806609481094724,0.974578807397524,0.673482891482306,1.16876902181569,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,3.95326289831947,5.9842280745933,6.87474616127276,2.06223818812425,3.42541259885321,3.7769694869485,0.675022500231806,2.2516060161211,1.35942722695261,2.5888015587591,0,0,0,0.729320151204882,0.419226325255965,0.735374033800057,0.888986911206461,0.206035057238894,0.64183841918363,0.758091635291392,0.25347929989024,0.943131706930381,0.37456602987953,0.512201219238954,0.746661096422973,0.476293691283074,0.695305955669133,0.77163688185482,0.824171801606613,1.17759136107518,1.02860775715625,0.532427418478012,0.476872379894642,0.290692833264657,0.846984423737976,0.592302255241736,0.914639864363863,0.526139422875686,0.679020569229309,1.12228454331548,1.06771516311757,0.29551344712669,0.818462086339379,0.619747364743864,0.385813221962283,0.749431733813838,0.701794825336225,0.644613162144895,0.57386499620653,0.882365676478062,0.463735671240843|short_description=p4@Rasgrp2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19395 | |||
|HGNC= | |||
|MCL_coexpression_id=90 | |||
|TSSclassifier=NA | |||
|UniProt=D3YZP1,D3YXD6 | |||
|association_with_transcript=0bp_to_ENSMUST00000127021,ENSMUST00000145611,ENSMUST00000146831_5end | |||
|cluster_id=chr19:6400523..6400559,+ | |||
|description=CAGE_peak_4_at_Rasgrp2_5end | |||
|id=chr19:6400523..6400559,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,6.40e-09,32;CL:0002032,6.40e-09,32;CL:0000037,6.40e-09,32;CL:0000837,6.40e-09,32;CL:0000791,6.71e-08,9;CL:0000789,6.71e-08,9;CL:0002420,6.71e-08,9;CL:0002419,6.71e-08,9;CL:0000790,6.71e-08,9;CL:0000034,2.08e-07,97;CL:0000838,2.75e-07,12;CL:0000723,3.58e-07,91;CL:0000048,3.58e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.82e-09!34;UBERON:0001049!1.58e-07!52;UBERON:0005068!1.58e-07!52;UBERON:0006241!1.58e-07!52;UBERON:0007135!1.58e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.32e-14,34;UBERON:0000073,6.09e-14,54;UBERON:0001049,1.55e-13,52;UBERON:0005068,1.55e-13,52;UBERON:0006241,1.55e-13,52;UBERON:0007135,1.55e-13,52;UBERON:0001017,8.92e-11,73;UBERON:0001016,2.92e-10,75;UBERON:0002021,2.97e-10,10;UBERON:0000411,2.97e-10,10;UBERON:0001950,2.97e-10,10;UBERON:0002346,1.47e-09,64;UBERON:0003075,1.47e-09,64;UBERON:0007284,1.47e-09,64;UBERON:0002240,3.76e-09,6;UBERON:0005174,3.76e-09,6;UBERON:0001137,3.76e-09,6;UBERON:0000955,4.42e-09,47;UBERON:0006238,4.42e-09,47;UBERON:0003528,6.93e-09,29;UBERON:0002791,6.93e-09,29;UBERON:0001893,6.93e-09,29;UBERON:0002616,2.17e-08,46;UBERON:0003080,2.20e-08,40;UBERON:0001948,2.27e-08,5;UBERON:0002315,2.27e-08,5;UBERON:0002780,1.35e-07,39;UBERON:0001890,1.35e-07,39;UBERON:0006240,1.35e-07,39;UBERON:0010371,1.73e-07,73 | |||
|phase1_expression=0,0,0,0,0,0,0,3.22808308603941,3.51971805379167,2.80877431586392,0.171217968225505,0,6.50562773738582,7.25589340077678,0.333109761815663,0.809901069559304,0,2.5236973228659,3.70208970735495,2.97072756258621,1.36069264241712,0.496454756004426,0.261199789138935,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4409111995798,3.906676722619,2.09409497589519,4.70585190424811,3.41522742479223,5.82612423637384,0,0,0,0,0,0,0,0,0,4.36234775750115,11.6057942721815,8.73843877770406,0,0,0.515672092277442,0,1.5869729378161,0.633831403506179,0,0.889294796111139,0,0,0,0,0,0.103689612308478,0,0,8.2838785477103,13.4729809980484,0.61245399607477,0.575072826109418,0.919218786610021,2.20231761998777,1.65993539510744,0.921639199537461,0.263772575460388,0.182975287204819,0,3.07101298901519,2.8138130501584,2.59757021220577,10.9012576625257,13.2405663143166,2.42319279572891,0,0,0.289864488701678,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.11418387971906,1.03575153458869,0.29688427812965,0,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0.433798070759735,1.76922110389975,0.323533699894818,0.441683036920787,0,0,0.292780797011547,0.41889341362691,0.255457055208591,1.55759661857696,1.79970819298022,2.03312363316904,3.89455662452539,40.7175536508578,14.0732874366408,3.30266208365325,6.13717097592793,3.1168206683934,13.7905073607594,0.101839363850316,0.746441823660558,0.505445516867349,0,0,0,0,0,0.204109497453984,0.384341160854549,0.0937017245597288,0,0,0,0.175951124163949,0,0,0,0,0,1.40442637462647,3.86021860672073,3.12579849335152,0,0,0,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0.243206428637567,0.438599962275997,0.219550115291051,0.268412837520744,0.210289948564127,1.13195073617213,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0.295220295959204,0.156998727841375,0.370191491765402,0,0.166845105716094,0.196558995113203,0.224862112384854,0.608580364165509,0.241177159752417,0.25462585178142,0.287696137450811,0.648540907100142,0.549122826376163,0,0,0,0,0,0,0.923765950833023,0,0,0.169745085775188,0,0,0.476087281772027,0.585400943573396,0.315270288212382,0,0.637819074629948,1.14704320301017,0.518054945597687,0.578596234326046,0,0,0,0,2.0871576698413,1.52375192569864,0,0,0,0,0,0,0,0,0,0,0,2.57057053137446,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0.316036757935816,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0.21183207086382,0,0,0.322928853391811,0.120625849856312,0,0.164140899745061,0,1.48340241608408,1.36696704638282,0.619160603889667,0.555583582109135,0.565105371014073,1.0935538217682,0.686334519619568,1.18984900995699,0.839708713941948,1.24379976423981,0,0,0,0,0,0,0.134864346384821,0.165306911450672,0.26175594198403,0.129614973291793,0.621339313086926,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0.419437377702843,0,0,0.316011120628178,0,0.102710957164827,0.77952493786677,0,0.198681354781265,0.841368146639782,1.18151621739662,0.908698049533329,0.838274873204998,0.806609481094724,0.974578807397524,0.673482891482306,1.16876902181569,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,3.95326289831947,5.9842280745933,6.87474616127276,2.06223818812425,3.42541259885321,3.7769694869485,0.675022500231806,2.2516060161211,1.35942722695261,2.5888015587591,0,0,0,0.729320151204882,0.419226325255965,0.735374033800057,0.888986911206461,0.206035057238894,0.64183841918363,0.758091635291392,0.25347929989024,0.943131706930381,0.37456602987953,0.512201219238954,0.746661096422973,0.476293691283074,0.695305955669133,0.77163688185482,0.824171801606613,1.17759136107518,1.02860775715625,0.532427418478012,0.476872379894642,0.290692833264657,0.846984423737976,0.592302255241736,0.914639864363863,0.526139422875686,0.679020569229309,1.12228454331548,1.06771516311757,0.29551344712669,0.818462086339379,0.619747364743864,0.385813221962283,0.749431733813838,0.701794825336225,0.644613162144895,0.57386499620653,0.882365676478062,0.463735671240843 | |||
|short_description=p4@Rasgrp2 | |||
}} |
Latest revision as of 03:08, 26 September 2015
Short description: | p4@Rasgrp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rasgrp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:90 |
Association with transcript: | 0bp_to_ENSMUST00000127021, ENSMUST00000145611, ENSMUST00000146831_5end |
EntrezGene: | Rasgrp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 6.40e-09 | 32 |
hematopoietic oligopotent progenitor cell | 6.40e-09 | 32 |
hematopoietic stem cell | 6.40e-09 | 32 |
hematopoietic multipotent progenitor cell | 6.40e-09 | 32 |
mature alpha-beta T cell | 6.71e-08 | 9 |
alpha-beta T cell | 6.71e-08 | 9 |
immature T cell | 6.71e-08 | 9 |
mature T cell | 6.71e-08 | 9 |
immature alpha-beta T cell | 6.71e-08 | 9 |
stem cell | 2.08e-07 | 97 |
lymphoid lineage restricted progenitor cell | 2.75e-07 | 12 |
somatic stem cell | 3.58e-07 | 91 |
multi fate stem cell | 3.58e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
gray matter | 4.32e-14 | 34 |
regional part of nervous system | 6.09e-14 | 54 |
neural tube | 1.55e-13 | 52 |
neural rod | 1.55e-13 | 52 |
future spinal cord | 1.55e-13 | 52 |
neural keel | 1.55e-13 | 52 |
central nervous system | 8.92e-11 | 73 |
nervous system | 2.92e-10 | 75 |
occipital lobe | 2.97e-10 | 10 |
visual cortex | 2.97e-10 | 10 |
neocortex | 2.97e-10 | 10 |
neurectoderm | 1.47e-09 | 64 |
neural plate | 1.47e-09 | 64 |
presumptive neural plate | 1.47e-09 | 64 |
spinal cord | 3.76e-09 | 6 |
dorsal region element | 3.76e-09 | 6 |
dorsum | 3.76e-09 | 6 |
brain | 4.42e-09 | 47 |
future brain | 4.42e-09 | 47 |
brain grey matter | 6.93e-09 | 29 |
regional part of telencephalon | 6.93e-09 | 29 |
telencephalon | 6.93e-09 | 29 |
regional part of brain | 2.17e-08 | 46 |
anterior neural tube | 2.20e-08 | 40 |
regional part of spinal cord | 2.27e-08 | 5 |
gray matter of spinal cord | 2.27e-08 | 5 |
regional part of forebrain | 1.35e-07 | 39 |
forebrain | 1.35e-07 | 39 |
future forebrain | 1.35e-07 | 39 |
ecto-epithelium | 1.73e-07 | 73 |