FFCP PHASE1:Hg19::chrX:123480421..123480435,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:123480421..123480435,+
|short_description=p2@SH2D1A
|description=CAGE_peak_2_at_SH2D1A_5end
|association_with_transcript=-3bp_to_ENST00000477673,ENST000004...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4068 | |EntrezGene=4068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10820 | |HGNC=10820 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-3bp_to_ENST00000477673,ENST00000491950,ENST00000494073_5end | |||
|cluster_id=chrX:123480421..123480435,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_SH2D1A_5end | |||
|id=chrX:123480421..123480435,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.14e-30!25;CL:0000827!1.14e-30!25;CL:0000791!2.94e-25!18;CL:0000789!2.94e-25!18;CL:0002420!2.94e-25!18;CL:0002419!2.94e-25!18;CL:0000790!2.94e-25!18;CL:0000838!4.37e-22!52;CL:0000542!1.88e-21!53;CL:0000051!1.88e-21!53;CL:0000738!3.40e-20!140;CL:0002087!1.16e-16!119;CL:0000625!1.20e-16!11;CL:0000988!6.92e-15!182;CL:0000037!1.76e-14!172;CL:0000566!1.76e-14!172;CL:0002031!8.95e-13!124;CL:0002032!4.40e-12!165;CL:0000837!4.40e-12!165;CL:0000624!4.39e-09!6;CL:0000080!2.00e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.83e-47;25!CL:0000791;1.79e-41;18!CL:0000789;1.79e-41;18!CL:0002419;1.79e-41;18!CL:0000625;6.97e-27;11!CL:0000542;1.19e-16;53!CL:0000624;3.03e-14;6!CL:0000898;4.55e-08;3!CL:0000623;7.87e-08;3!CL:0000226;1.94e-07;3!CL:0000842;1.94e-07;3!CL:0000767;3.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.75e-47,25;CL:0000827,1.75e-47,25;CL:0000791,1.88e-41,18;CL:0000789,1.88e-41,18;CL:0002420,1.88e-41,18;CL:0002419,1.88e-41,18;CL:0000790,1.88e-41,18;CL:0000838,5.03e-30,52;CL:0000542,2.68e-29,53;CL:0000051,2.68e-29,53;CL:0000625,6.40e-27,11;CL:0000738,4.16e-17,136;CL:0002087,6.90e-15,115;CL:0000624,3.40e-14,6;CL:0000988,5.07e-14,177;CL:0000037,1.14e-12,168;CL:0002031,5.88e-11,120;CL:0002032,3.27e-10,161;CL:0000837,3.27e-10,161;CL:0000898,5.01e-08,3;CL:0000623,7.50e-08,3;CL:0000825,7.50e-08,3;CL:0000226,1.82e-07,3;CL:0000842,1.82e-07,3;CL:0000767,3.92e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.79e-41;18!CL:0000051;1.19e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.15e-19!15;UBERON:0000179!6.15e-19!15;UBERON:0000463!6.15e-19!15;UBERON:0007023!6.95e-14!115;UBERON:0002390!1.89e-08!102;UBERON:0003061!1.89e-08!102;UBERON:0002193!4.44e-08!112;UBERON:0004177!1.30e-07!7;UBERON:0002370!4.78e-07!4;UBERON:0005058!4.78e-07!4;UBERON:0009113!4.78e-07!4;UBERON:0003295!4.78e-07!4;UBERON:0005562!4.78e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.23e-31;15!UBERON:0000179;8.23e-31;15!UBERON:0000463;8.23e-31;15!UBERON:0002390;7.23e-22;32!UBERON:0002193;1.72e-13;42!UBERON:0004177;5.53e-08;5!UBERON:0005057;5.53e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.82e-31,15;UBERON:0000179,8.82e-31,15;UBERON:0000463,8.82e-31,15;UBERON:0004177,4.74e-12,7;UBERON:0005057,4.74e-12,7;UBERON:0002370,8.76e-11,4;UBERON:0005058,8.76e-11,4;UBERON:0009113,8.76e-11,4;UBERON:0003295,8.76e-11,4;UBERON:0005562,8.76e-11,4;UBERON:0002193,3.86e-08,108;UBERON:0003408,4.40e-08,10;UBERON:0002390,6.61e-08,98;UBERON:0003061,6.61e-08,98;UBERON:0003351,3.80e-07,6 | |||
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| ||
|short_description=p2@SH2D1A | |||
}} | }} |
Latest revision as of 08:03, 19 September 2015
Short description: | p2@SH2D1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SH2D1A_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -3bp_to_ENST00000477673, ENST00000491950, ENST00000494073_5end |
EntrezGene: | SH2D1A |
HGNC: | 10820 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.75e-47 | 25 |
pro-T cell | 1.75e-47 | 25 |
mature alpha-beta T cell | 1.88e-41 | 18 |
alpha-beta T cell | 1.88e-41 | 18 |
immature T cell | 1.88e-41 | 18 |
mature T cell | 1.88e-41 | 18 |
immature alpha-beta T cell | 1.88e-41 | 18 |
lymphoid lineage restricted progenitor cell | 5.03e-30 | 52 |
lymphocyte | 2.68e-29 | 53 |
common lymphoid progenitor | 2.68e-29 | 53 |
CD8-positive, alpha-beta T cell | 6.40e-27 | 11 |
leukocyte | 4.16e-17 | 136 |
nongranular leukocyte | 6.90e-15 | 115 |
CD4-positive, alpha-beta T cell | 3.40e-14 | 6 |
hematopoietic cell | 5.07e-14 | 177 |
hematopoietic stem cell | 1.14e-12 | 168 |
hematopoietic lineage restricted progenitor cell | 5.88e-11 | 120 |
hematopoietic oligopotent progenitor cell | 3.27e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.27e-10 | 161 |
naive T cell | 5.01e-08 | 3 |
natural killer cell | 7.50e-08 | 3 |
pro-NK cell | 7.50e-08 | 3 |
single nucleate cell | 1.82e-07 | 3 |
mononuclear cell | 1.82e-07 | 3 |
basophil | 3.92e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 8.82e-31 | 15 |
haemolymphatic fluid | 8.82e-31 | 15 |
organism substance | 8.82e-31 | 15 |
hemopoietic organ | 4.74e-12 | 7 |
immune organ | 4.74e-12 | 7 |
thymus | 8.76e-11 | 4 |
hemolymphoid system gland | 8.76e-11 | 4 |
thymic region | 8.76e-11 | 4 |
pharyngeal gland | 8.76e-11 | 4 |
thymus primordium | 8.76e-11 | 4 |
hemolymphoid system | 3.86e-08 | 108 |
gland of gut | 4.40e-08 | 10 |
hematopoietic system | 6.61e-08 | 98 |
blood island | 6.61e-08 | 98 |
pharyngeal epithelium | 3.80e-07 | 6 |