FFCP PHASE1:Hg19::chr4:53617761..53617784,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt=Q9H9K5 | |||
|association_with_transcript=0bp_to_uc003gzr.2,uc003gzs.2_5end | |||
|cluster_id=chr4:53617761..53617784,- | |||
|coexpression_cluster_id=C1586 | |||
|description=CAGE_peak_1_at_uc003gzr.2_5end,CAGE_peak_1_at_uc003gzs.2_5end | |||
|id=chr4:53617761..53617784,- | |||
|ontology_enrichment_celltype=CL:0000066!3.29e-24!254;CL:0002076!8.41e-16!43;CL:0000223!1.24e-10!59;CL:0002251!8.41e-10!21;CL:0002322!4.05e-07!5;CL:0002159!5.14e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.89e-16;5!CL:0002327;1.90e-12;4!CL:0000039;1.40e-11;7!CL:0000586;1.40e-11;7!CL:0002076;1.08e-07;42!CL:0002159;2.78e-07;14!CL:0000317;2.89e-07;2!CL:1000448;2.89e-07;2!CL:0002308;2.89e-07;2!CL:0002140;2.89e-07;2!CL:0000575;3.82e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.54e-16,5;CL:0000066,9.70e-16,253;CL:0002327,8.27e-13,4;CL:0000039,2.03e-11,7;CL:0000586,2.03e-11,7;CL:0002076,4.35e-08,42;CL:0000575,2.68e-07,2;CL:0002159,3.26e-07,14;CL:0002077,4.17e-07,34;CL:0000317,5.00e-07,2;CL:1000448,5.00e-07,2;CL:0002308,5.00e-07,2;CL:0002140,5.00e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.17e-13!106;DOID:1749!4.93e-11!14;DOID:0050687!2.73e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:299;1.13e-08;25!DOID:1749;1.90e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.51e-08,106;DOID:299,1.68e-08,25;DOID:1749,2.14e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.03e-10!219;UBERON:0004121!8.21e-10!169;UBERON:0000924!1.32e-09!173;UBERON:0006601!1.32e-09!173;UBERON:0007023!2.63e-08!115;UBERON:0004119!3.20e-08!169;UBERON:0000925!3.20e-08!169;UBERON:0006595!3.20e-08!169;UBERON:0000153!4.84e-08!129;UBERON:0007811!4.84e-08!129;UBERON:0000062!6.45e-08!511;UBERON:0000033!9.30e-08!123;UBERON:0005153!2.40e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;1.90e-12;4!UBERON:0002419;2.89e-07;2!UBERON:0007771;2.89e-07;2!UBERON:0003297;2.89e-07;2!UBERON:0001821;2.89e-07;2!UBERON:0003487;2.89e-07;2!UBERON:0001820;2.89e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,8.27e-13,4;UBERON:0005333,8.27e-13,4;UBERON:0008425,8.27e-13,4;UBERON:0005311,8.27e-13,4;UBERON:0002419,5.00e-07,2;UBERON:0007771,5.00e-07,2;UBERON:0003297,5.00e-07,2;UBERON:0001821,5.00e-07,2;UBERON:0003487,5.00e-07,2;UBERON:0001820,5.00e-07,2;UBERON:0005089,5.00e-07,2;UBERON:0005088,5.00e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.527533956456907,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.130979075497713,1.82147644146271,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.90922284413584,0.573609190778008,5.00092195131341,2.38553582978673,2.09149097165133,1.65857688024593,4.79409616663694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,3.81264159483652,0,1.31700342490351,0,0.603173834469785,0.648119116109707,0,0,0,0,0.469634776943287,0,0,0,0,3.43394464837949,0,0,0,0,0.503946384596579,1.41775097242386,1.52249488594842,1.45316969256981,3.83382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,5.92211302998949,0.40101294060657,1.84161977871793,0,0,0,0.902399225814824,0.385076685522074,1.56869953835371,1.46139224653261,0.316654886678627,0,0,0,0,0,0,1.78413391131527,1.66215201785745,0.671624264166535,0,0,0.512900250232778,1.64007322849853,0,1.33953315142039,0,0.082509499920588,1.14853107599234,3.25030123018261,0,0,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0.192190067365106,0.893288987462089,2.4277867405332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,0,0.941438007767792,0.43050537267123,0,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7428108081644,0,0,0,0,0.47748896947538,0.593929361665277,0.307160702099232,0,0.422008249231538,0,0,0.422250816255987,0,0,0.503865495708552,0,0,0,0.179736702294654,0.179021174675609,0,0.197286811273867,0,0,0,0.371072392647405,1.99613798001194,0.520855522170466,1.92411999991631,0,3.52759689685049,0,1.89110145414349,0,0,0.520874984799877,0,0.120596438625408,0,0,0.295547618953547,0.219385397153973,0,0.557694977114413,0.0769502585037971,0,76.777780161224,0,48.7826699929816,0.957003479195758,0.183195186803725,0,0,0,0,0,0,0,0,0,0.210998064528027,1.14262965711403,15.1247786434317,0.432777279484182,0.995261931078505,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0.789168805698781,0,0.61214552326098,0,0.150323419414493,0,0,0,0,0,1.13843818411917,0,0.347119476670262,0.489961987071888,3.65648667637691,0.52418000472609,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0.586654148204409,0,0,0,1.44090417154106,0,0,0.288109595976299,0.248505071130865,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.399358000997982,0,0.669514372325618,2.08268764708851,0,0,0,0,0,0,0,0,0.681017030557878,2.73280352390533,4.95141971750042,3.73896304226267,0,0,0.242998226632099,0,1.18208560948797,1.31136470337495,0,0.179287339332845,1.34340638123612,1.42939065274673,0.662091970365432,0,0,0,0,0,3.77625595446959,0,0,0,0,0,0,0,0,0.213574825135389,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,15.0771932400225,0,0.488105059607853,0.3755727921195,0.573409195690071,0.332787154610557,0.124192805882767,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0.308801447160972,0.219284049578707,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,1.67855409263333,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0,0,0,0,0,0,0.0642292250964595,0,1.11743701340006,0.41023272848151,0.504143392443436,0.484100767249525,0,0,1.07962490351128,0.471878893390961,0.183428598521679,0.346576998451015,0,0.690359926060101,0,0.376051641746286,0,0.781514011233092,0,0,1.18284868973636,0.337687923091973,0,0,0.380494861163441,0,0,0,0,0.638812138197976,0,0.336283722218824,0,0,4.3464161379693,0,0,0.0679697329768317,0.394636641377094,0.709163045303809,0.111231401892069,0.156986185701028,0,1.40136081656895,0.913158720509496,0,0,0.214429632529969,0,0,0.173858272302579,0,0,0.6828739083758,1.38251932362818,0,0,0,0,2.52017555398455,0,0,51.3416431951867,0,0.609589624911347,0,0,0,0,0,0,0,7.79327966068824,0,0.603851374266694,0,0,0,0,0,0,0.297046400327086,0,0,0,0.193373663920732,0,0.892769693028288,1.76447435857846,0,0,0.458729283404541,0.286679166302903,0.315543124386369,0.203974470572744,1.30905207102113,0,0,0,0,0,0.546327859818478,1.26698501011437,1.32585478664576,0.534434810531121,4.77853477581194,1.25353769646188,0.378893491091197,0.267964130156178,0,0.20686599172379,0,0.23806443146374,0.0645889098360061,0.124149428591716,0,0.572824424503484,0,0.6531502436908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| |||
|short_description=p1@uc003gzr.2,p1@uc003gzs.2 | |||
}} |
Latest revision as of 00:04, 18 September 2015
Short description: | p1@uc003gzr.2, p1@uc003gzs.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc003gzr.2_5end, CAGE_peak_1_at_uc003gzs.2_5end |
Coexpression cluster: | C1586_choriocarcinoma_serous_maxillary_colon_small_Prostate_H9 |
Association with transcript: | 0bp_to_uc003gzr.2, uc003gzs.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.54e-16 | 5 |
epithelial cell | 9.70e-16 | 253 |
mammary gland epithelial cell | 8.27e-13 | 4 |
germ line cell | 2.03e-11 | 7 |
germ cell | 2.03e-11 | 7 |
endo-epithelial cell | 4.35e-08 | 42 |
corneal epithelial cell | 2.68e-07 | 2 |
general ecto-epithelial cell | 3.26e-07 | 14 |
ecto-epithelial cell | 4.17e-07 | 34 |
sebum secreting cell | 5.00e-07 | 2 |
epithelial cell of sweat gland | 5.00e-07 | 2 |
epithelial cell of skin gland | 5.00e-07 | 2 |
acinar cell of sebaceous gland | 5.00e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 8.27e-13 | 4 |
mammary bud | 8.27e-13 | 4 |
mammary ridge | 8.27e-13 | 4 |
mammary placode | 8.27e-13 | 4 |
skin gland | 5.00e-07 | 2 |
epidermis gland | 5.00e-07 | 2 |
gland of integumental system | 5.00e-07 | 2 |
sebaceous gland | 5.00e-07 | 2 |
skin sebaceous gland | 5.00e-07 | 2 |
sweat gland | 5.00e-07 | 2 |
sweat gland placode | 5.00e-07 | 2 |
sebaceous gland placode | 5.00e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.51e-08 | 106 |
adenocarcinoma | 1.68e-08 | 25 |
squamous cell carcinoma | 2.14e-07 | 14 |