FFCP PHASE1:Hg19::chr4:1164223..1164265,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:1164223..1164265,- | |||
|coexpression_cluster_id=C574 | |||
|description=CAGE_peak_at_chr4:1164223..1164265,- | |||
|id=chr4:1164223..1164265,- | |||
|ontology_enrichment_celltype=CL:0000057!4.52e-18!75;CL:0000048!2.68e-13!430;CL:0000723!6.35e-13!436;CL:0000055!3.79e-12!180;CL:0000034!5.79e-12!444;CL:0002320!7.51e-12!365;CL:0000134!1.63e-10!358;CL:0000219!4.06e-09!390;CL:0002334!3.85e-08!12;CL:0000136!4.07e-08!15;CL:0002371!6.04e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.50e-14;13!CL:0002334;4.19e-14;12!CL:0000134;1.69e-12;55!CL:0000048;2.02e-11;58!CL:0000723;5.22e-11;61!CL:0000034;7.26e-11;69!CL:0002622;9.30e-09;3!CL:0002504;1.21e-08;3!CL:1000279;1.21e-08;3!CL:1000280;1.21e-08;3!CL:0002521;1.80e-08;3!CL:0002615;2.17e-08;3!CL:0002579;8.62e-08;3!CL:0002570;8.33e-07;8!CL:0002569;8.57e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,8.84e-18,15;CL:0000048,8.91e-17,427;CL:0000723,2.76e-16,433;CL:0000034,1.19e-15,441;CL:0002334,2.90e-14,12;CL:0002320,9.03e-13,361;CL:0000134,1.14e-12,354;CL:0000219,1.94e-11,386;CL:0002622,9.68e-09,3;CL:0002504,1.31e-08,3;CL:1000279,1.31e-08,3;CL:1000280,1.31e-08,3;CL:0002521,1.90e-08,3;CL:0002615,2.67e-08,3;CL:0002579,9.72e-08,3;CL:0000057,3.46e-07,76;CL:0002569,7.31e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.37e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.72e-14;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.97e-14,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!7.34e-12!375;UBERON:0001013!2.53e-09!14;UBERON:0003102!3.18e-08!95;UBERON:0004923!1.26e-07!57;UBERON:0003688!1.85e-07!6;UBERON:0002358!1.85e-07!6;UBERON:0003684!1.85e-07!6;UBERON:0001178!1.85e-07!6;UBERON:0004457!5.09e-07!12;UBERON:0000042!5.09e-07!12;UBERON:0000914!5.53e-07!83;UBERON:0002329!5.53e-07!83;UBERON:0003077!5.53e-07!83;UBERON:0003059!5.53e-07!83;UBERON:0007282!5.53e-07!83;UBERON:0009618!5.53e-07!83;UBERON:0007285!5.53e-07!83;UBERON:0005256!9.24e-07!143;UBERON:0004290!9.94e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.69e-14;6!UBERON:0002358;1.69e-14;6!UBERON:0003684;1.69e-14;6!UBERON:0001178;1.69e-14;6!UBERON:0002072;3.46e-12;5!UBERON:0001013;3.57e-12;14!UBERON:0004457;2.18e-09;9!UBERON:0000042;2.18e-09;9!UBERON:0002190;1.80e-08;3!UBERON:0003422;8.57e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.34e-14,6;UBERON:0002358,2.34e-14,6;UBERON:0003684,2.34e-14,6;UBERON:0001178,2.34e-14,6;UBERON:0002072,2.77e-12,5;UBERON:0001013,4.63e-12,14;UBERON:0002384,5.40e-12,371;UBERON:0002190,1.90e-08,3;UBERON:0002100,7.30e-07,199;UBERON:0003422,7.31e-07,6;UBERON:0004457,9.04e-07,12;UBERON:0000042,9.04e-07,12 | |||
|phase1_expression=8.3572054464456,5.1384125733836,5.77913056793482,2.00146596706261,13.4088328328186,3.48935409640147,30.3959853801973,6.31719873426831,2.08948502559871,0,0,0,0.527533956456907,1.36142988256051,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.534880391567015,0.289648807765598,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.264818361626438,0.286836620748814,0,0,0,0,0.622422070799533,0.134710672069688,0.163461903113459,0.151357427644931,1.15235184896,0.234321431833797,12.1742429963825,0.570471821544449,1.49448680551801,0.469737994575059,0.485618833104395,0.280901613404497,0.204154171254893,0.61417158655884,0.516628905878827,10.6920257155385,5.93440630268536,0.910161361938026,12.2165084108761,0.168336113954066,0,0,0,1.5324389789951,1.20190447125277,0.113432183160021,0.179389635688862,0,0.423863802319124,0.300091096084402,0.309157587715317,0,0.18611685633159,0,0.0974370051611986,0,0,0.161646056818812,0,0.10075209822764,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,2.57296375277154,2.76269842704961,0.464367928031979,10.1063127433742,0.236613600079688,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,2.80483547606892,2.057870056657,5.88034845542168,0,0,0.590789906681404,0,0,0,0.109750285408626,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,1.90994212779139,0,0,0.514137463516618,2.10240140490742,0,0,0,0.07333828582095,3.61960804121778,17.8828222925941,0,11.9672152463192,2.08014873822732,0,0,0.266422179016099,0.857867961948885,13.5655401347861,2.46972101034231,0.65147236858747,1.06617584622764,2.37585561880029,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0.868687840005475,0,0.179060963239896,0,1.37921532141349,0.215627574859517,1.02674429023799,0.254094624222463,0,0,0,0,0,0,0,0.613457458595699,0,0,0,0,0,0,0,0,1.03473071292505,0,0,2.69339204851057,0.195801157462741,0.343143423810856,0.206768026122887,0,0.533637789017222,0,0,0,5.21026396419431,0,1.68396056659844,3.84417447767103,2.04682899626681,2.0911009748669,0,1.54209693802656,2.13074070375753,0.410635780069046,3.11552657510173,1.85936605535935,0,0,0,4.36294903025506,10.5612877443896,21.1110308084673,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0.614014698904518,0.551346289938122,1.50388342815583,0.290033387828457,0.511359764496605,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,4.38449446024797,2.04718233049067,3.42351190427136,0,0,7.3747707609159,11.5305552489143,4.00562167975334,0,0,0,4.38870365180631,0,0,3.00299805097569,27.9982755268351,0,0,0,0,3.47265320560013,4.59126326432643,0,0,0,1.00387946542836,0.491245205065606,0,0.709522128141196,0.633322905892992,0.329294892959902,0.379473173765715,1.39973888097993,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.71623345421307,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0.123084805461069,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0.221158519862449,0,0,0,0,2.07765697960252,0,0,0,0,0,3.84709892287822,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09672001890436,0,0,0,0,0.581934098930517,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,1.72844298240254,0.326587360109409,0,0,0.170388021785422,0,0.58620893471233,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0.691743174681154,0,0,0,0,0,0,0.149254802886874,1.16856654923612,1.10961172300523,0.378806010550178,1.50940741051545,0,0.457680136793847,3.62954217031774,0,0,0.477890301491107,3.14862178514523,1.24210365501008,1.24411862352257,2.12673371646396,4.69570555630561,1.95334891696384,1.90402606084398,0,2.00033525122815,0.322231671127465,1.39210127963548,3.98095888698616,0,1.37358282073117,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,8.88111884324281,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.526472298444801,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0.535701835878287,0,0,0,0.354809480650555,0,0,0,0,0,0,0.470958557103084,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993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| |||
|short_description=p@chr4:1164223..1164265,- | |||
}} |
Latest revision as of 01:09, 30 July 2015
Short description: | p@chr4:1164223..1164265, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:1164223..1164265, - |
Coexpression cluster: | C574_Mesenchymal_Fibroblast_Smooth_Prostate_Adipocyte_Hair_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 8.84e-18 | 15 |
multi fate stem cell | 8.91e-17 | 427 |
somatic stem cell | 2.76e-16 | 433 |
stem cell | 1.19e-15 | 441 |
preadipocyte | 2.90e-14 | 12 |
connective tissue cell | 9.03e-13 | 361 |
mesenchymal cell | 1.14e-12 | 354 |
motile cell | 1.94e-11 | 386 |
prostate stromal cell | 9.68e-09 | 3 |
enteric smooth muscle cell | 1.31e-08 | 3 |
smooth muscle cell of large intestine | 1.31e-08 | 3 |
smooth muscle cell of colon | 1.31e-08 | 3 |
subcutaneous fat cell | 1.90e-08 | 3 |
adipocyte of omentum tissue | 2.67e-08 | 3 |
omentum preadipocyte | 9.72e-08 | 3 |
fibroblast | 3.46e-07 | 76 |
mesenchymal stem cell of umbilical cord | 7.31e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.34e-14 | 6 |
peritoneum | 2.34e-14 | 6 |
abdominal cavity | 2.34e-14 | 6 |
visceral peritoneum | 2.34e-14 | 6 |
hypodermis | 2.77e-12 | 5 |
adipose tissue | 4.63e-12 | 14 |
connective tissue | 5.40e-12 | 371 |
subcutaneous adipose tissue | 1.90e-08 | 3 |
trunk | 7.30e-07 | 199 |
mesenchyme of umbilical cord | 7.31e-07 | 6 |
cavity lining | 9.04e-07 | 12 |
serous membrane | 9.04e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.97e-14 | 14 |