FFCP PHASE1:Mm9::chr13:21272259..21272329,+: Difference between revisions
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{{FFCP|EntrezGene=19720|HGNC=|MCL_coexpression_id=0|UniProt=Q62158|association_with_transcript=177bp_to_ENSMUST00000021761_5end|description=CAGE_peak_2_at_Trim27_5end|id=chr13:21272259..21272329,+|ontology_enrichment_celltype=CL:0000988!2.68e-07!32;CL:0002032!2.68e-07!32;CL:0000037!2.68e-07!32;CL:0000566!2.68e-07!32;CL:0000837!2.68e-07!32;CL:0000034!6.39e-07!97|ontology_enrichment_celltype_v019_2=CL:0000988,1.56e-07,32;CL:0002032,1.56e-07,32;CL:0000037,1.56e-07,32;CL:0000837,1.56e-07,32;CL:0000034,2.70e-07,97;CL:0000838,8.47e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.10e-10!45;UBERON:0003061!1.10e-10!45;UBERON:0002193!1.33e-10!48;UBERON:0002405!1.20e-07!70;UBERON:0004177!1.39e-07!29;UBERON:0002370!3.55e-07!23;UBERON:0000974!3.55e-07!23;UBERON:0004807!3.55e-07!23;UBERON:0005058!3.55e-07!23;UBERON:0003351!3.55e-07!23;UBERON:0009113!3.55e-07!23;UBERON:0003295!3.55e-07!23;UBERON:0009722!3.55e-07!23;UBERON:0005562!3.55e-07!23;UBERON:0007690!3.55e-07!23;UBERON:0000072!8.28e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.62e-11,45;UBERON:0003061,2.62e-11,45;UBERON:0002193,3.29e-11,48;UBERON:0002405,3.29e-11,48;UBERON:0004177,3.64e-08,29;UBERON:0005057,3.64e-08,29;UBERON:0002370,8.58e-08,23;UBERON:0000974,8.58e-08,23;UBERON:0004807,8.58e-08,23;UBERON:0005058,8.58e-08,23;UBERON:0003351,8.58e-08,23;UBERON:0009113,8.58e-08,23;UBERON:0003295,8.58e-08,23;UBERON:0009722,8.58e-08,23;UBERON:0005562,8.58e-08,23;UBERON:0007690,8.58e-08,23;UBERON:0000072,2.37e-07,27;UBERON:0000077,3.03e-07,35;UBERON:0006562,6.29e-07,24;UBERON:0003408,6.29e-07,24;UBERON:0001557,6.29e-07,24;UBERON:0001042,6.29e-07,24;UBERON:0008814,6.29e-07,24;UBERON:0009145,6.29e-07,24;UBERON:0000065,7.26e-07,41|phase1_expression=1.28119077683835,0.697950815278722,1.36499771816861,0.60492842261366,0.500895729946347,1.17515490338323,1.86890112476421,7.48915275961142,4.08287294239834,2.80877431586392,2.73948749160808,2.39316476986009,4.96482116800497,6.38168937658681,1.66554880907831,2.42970320867791,1.39912375625629,4.25873923233621,4.11343300817216,2.54633791078818,10.2902381082794,3.57447424323187,4.96279599363977,1.11994695955385,1.83527424853736,1.72269589234506,1.7230479846363,1.07735616342945,0.570070258369122,1.26015064879965,1.55211357458713,1.27006134691926,2.46025915033828,0,2.02196133825892,0.831173226792462,1.42918549383658,5.02237956884289,10.1573594788094,3.14114246384279,6.47054636834116,8.19654581950135,10.1957174136542,1.25896817975577,1.52065396829272,1.46837401729345,2.34717403304412,1.09012578190223,1.31811709640683,1.1665793944457,1.25987779462826,0,4.69791296961662,4.35217285206807,8.4023449785616,1.80081605225163,0.573066879877513,1.54701627683233,1.61853168687678,2.64495489636016,1.26766280701236,1.69422266034566,0,6.29929802096979,9.88866362566974,9.2362414942993,1.79760066311043,1.53687322128622,2.28117147078651,2.29510095163874,1.05162480675691,0.856952953211411,0.441737081903227,1.95985278743926,2.30029130443767,2.75765635983006,2.20231761998777,1.40456071893706,1.68967186581868,2.63772575460388,2.19570344645783,2.6045668527838,1.11673199600552,3.93933827022176,1.37518422999129,1.47314292736834,1.42371680799103,1.4911955666024,0.908714319998209,0.831287161174641,1.73918693221007,1.72084775396277,2.03991400112325,0.539703191637817,1.94932925234301,0.448026887097336,2.10666630197628,0.340860645156116,0.779358013808606,0.35333957451034,1.26759077799012,0,0,0,2.59789249213457,1.52015919285059,3.53867111510348,1.37020655662872,3.10725460376606,0.742210695324124,1.04091196059682,1.82679286987285,0.922461989024234,1.65794904607885,1.52865319276416,0.502666365318702,4.20231445148436,0.144599356919912,0.884610551949874,1.13236794963186,2.20841518460394,1.45462575940567,0,0.292780797011547,1.25668024088073,0.255457055208591,4.07371423320129,2.99951365496704,2.92261522268049,1.19832511523858,1.83000241127451,2.1361239859187,0.695297280769106,0.767146371990992,1.0389402227978,1.29793010454206,1.52759045775474,1.61729061793121,1.26361379216837,2.94618598241064,2.34216797332867,1.37941262660084,0.720248519221397,0.90422890701429,1.7009124787832,0.512454881139399,0.937017245597288,1.03481348295606,2.80238390812695,3.02569728268511,1.58356011747554,1.7535658594206,2.50242524303038,0.348252166522167,1.85203922767149,1.59227413454795,1.40442637462647,2.83082697826187,3.12579849335152,1.44988040774851,1.17263029990548,0.900310307305074,1.65721314909647,0.983821158737019,0.925602677324269,1.39520366850245,0.536546802799238,1.05088808130453,0.329119699826961,0.656669856316381,0.729619285912702,0.438599962275997,0,0.536825675041487,1.68231958851302,2.46971069710283,0,0.793351699990633,1.49301775374664,2.78684006232526,1.67527699718721,2.42020229548011,1.55664630691409,2.85338439168839,1.89811624617805,3.12928013975621,2.26201687920243,2.78539060857611,3.11942539390592,0.898819408654221,1.08069024937347,1.59313018603494,2.46568271239006,1.71372768914593,2.25415471346161,2.03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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19720 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q62158 | |||
|association_with_transcript=177bp_to_ENSMUST00000021761_5end | |||
|cluster_id=chr13:21272259..21272329,+ | |||
|description=CAGE_peak_2_at_Trim27_5end | |||
|id=chr13:21272259..21272329,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.68e-07!32;CL:0002032!2.68e-07!32;CL:0000037!2.68e-07!32;CL:0000566!2.68e-07!32;CL:0000837!2.68e-07!32;CL:0000034!6.39e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.56e-07,32;CL:0002032,1.56e-07,32;CL:0000037,1.56e-07,32;CL:0000837,1.56e-07,32;CL:0000034,2.70e-07,97;CL:0000838,8.47e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.10e-10!45;UBERON:0003061!1.10e-10!45;UBERON:0002193!1.33e-10!48;UBERON:0002405!1.20e-07!70;UBERON:0004177!1.39e-07!29;UBERON:0002370!3.55e-07!23;UBERON:0000974!3.55e-07!23;UBERON:0004807!3.55e-07!23;UBERON:0005058!3.55e-07!23;UBERON:0003351!3.55e-07!23;UBERON:0009113!3.55e-07!23;UBERON:0003295!3.55e-07!23;UBERON:0009722!3.55e-07!23;UBERON:0005562!3.55e-07!23;UBERON:0007690!3.55e-07!23;UBERON:0000072!8.28e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.62e-11,45;UBERON:0003061,2.62e-11,45;UBERON:0002193,3.29e-11,48;UBERON:0002405,3.29e-11,48;UBERON:0004177,3.64e-08,29;UBERON:0005057,3.64e-08,29;UBERON:0002370,8.58e-08,23;UBERON:0000974,8.58e-08,23;UBERON:0004807,8.58e-08,23;UBERON:0005058,8.58e-08,23;UBERON:0003351,8.58e-08,23;UBERON:0009113,8.58e-08,23;UBERON:0003295,8.58e-08,23;UBERON:0009722,8.58e-08,23;UBERON:0005562,8.58e-08,23;UBERON:0007690,8.58e-08,23;UBERON:0000072,2.37e-07,27;UBERON:0000077,3.03e-07,35;UBERON:0006562,6.29e-07,24;UBERON:0003408,6.29e-07,24;UBERON:0001557,6.29e-07,24;UBERON:0001042,6.29e-07,24;UBERON:0008814,6.29e-07,24;UBERON:0009145,6.29e-07,24;UBERON:0000065,7.26e-07,41 | |||
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| |||
|short_description=p2@Trim27 | |||
}} |
Latest revision as of 06:24, 27 September 2015
Short description: | p2@Trim27 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Trim27_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 177bp_to_ENSMUST00000021761_5end |
EntrezGene: | Trim27 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.56e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.56e-07 | 32 |
hematopoietic stem cell | 1.56e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.56e-07 | 32 |
stem cell | 2.70e-07 | 97 |
lymphoid lineage restricted progenitor cell | 8.47e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.62e-11 | 45 |
blood island | 2.62e-11 | 45 |
hemolymphoid system | 3.29e-11 | 48 |
immune system | 3.29e-11 | 48 |
hemopoietic organ | 3.64e-08 | 29 |
immune organ | 3.64e-08 | 29 |
thymus | 8.58e-08 | 23 |
neck | 8.58e-08 | 23 |
respiratory system epithelium | 8.58e-08 | 23 |
hemolymphoid system gland | 8.58e-08 | 23 |
pharyngeal epithelium | 8.58e-08 | 23 |
thymic region | 8.58e-08 | 23 |
pharyngeal gland | 8.58e-08 | 23 |
entire pharyngeal arch endoderm | 8.58e-08 | 23 |
thymus primordium | 8.58e-08 | 23 |
early pharyngeal endoderm | 8.58e-08 | 23 |
segment of respiratory tract | 2.37e-07 | 27 |
mixed endoderm/mesoderm-derived structure | 3.03e-07 | 35 |
pharynx | 6.29e-07 | 24 |
gland of gut | 6.29e-07 | 24 |
upper respiratory tract | 6.29e-07 | 24 |
chordate pharynx | 6.29e-07 | 24 |
pharyngeal arch system | 6.29e-07 | 24 |
pharyngeal region of foregut | 6.29e-07 | 24 |
respiratory tract | 7.26e-07 | 41 |