FFCP PHASE1:Hg19::chr2:53161632..53161661,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:53161632..53161661,- | |||
|description=CAGE_peak_at_chr2:53161632..53161661,- | |||
|id=chr2:53161632..53161661,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002602;4.54e-29;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,2.22e-29,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.92e-15;1!DOID:4549;1.92e-15;1!DOID:5861;1.92e-15;1!DOID:6496;1.92e-15;1!DOID:4929;2.23e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.38e-15,1;DOID:4549,2.38e-15,1;DOID:5861,2.38e-15,1;DOID:6496,2.38e-15,1;DOID:4929,3.08e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0002394!3.28e-08!4;UBERON:0003928!3.28e-08!4;UBERON:0002418!5.58e-08!3;UBERON:0004755!5.58e-08!3;UBERON:0002294!3.61e-07!7;UBERON:0001173!3.61e-07!7;UBERON:0004912!3.61e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;1.15e-42;3!UBERON:0004755;1.15e-42;3!UBERON:0006444;4.54e-29;2!UBERON:0001995;4.54e-29;2!UBERON:0004715;4.54e-29;2!UBERON:0011135;3.04e-26;5!UBERON:0002216;3.04e-26;5!UBERON:0011134;3.04e-26;5!UBERON:0002209;3.04e-26;5!UBERON:0002213;3.04e-26;5!UBERON:0007844;3.04e-26;5!UBERON:0011138;3.04e-26;5!UBERON:0001130;3.04e-26;5!UBERON:0001066;3.04e-26;5!UBERON:0001468;3.04e-26;5!UBERON:0004905;1.14e-16;8!UBERON:0000982;1.14e-16;8!UBERON:0004770;1.14e-16;8!UBERON:0002135;8.02e-16;1!UBERON:0004913;1.92e-15;1!UBERON:0003703;1.92e-15;1!UBERON:0001174;1.92e-15;1!UBERON:0004914;1.92e-15;1!UBERON:0004765;4.81e-09;26!UBERON:0000075;1.24e-08;16!UBERON:0003127;1.44e-08;2!UBERON:0002133;1.44e-08;2!UBERON:0000341;2.23e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,7.00e-43,3;UBERON:0004755,7.00e-43,3;UBERON:0006444,2.22e-29,2;UBERON:0001995,2.22e-29,2;UBERON:0004715,2.22e-29,2;UBERON:0011135,1.98e-26,5;UBERON:0002216,1.98e-26,5;UBERON:0011134,1.98e-26,5;UBERON:0002209,1.98e-26,5;UBERON:0002213,1.98e-26,5;UBERON:0005856,1.98e-26,5;UBERON:0005866,1.98e-26,5;UBERON:0005863,1.98e-26,5;UBERON:0007844,1.98e-26,5;UBERON:0011138,1.98e-26,5;UBERON:0001130,1.98e-26,5;UBERON:0001066,1.98e-26,5;UBERON:0001468,1.98e-26,5;UBERON:0004905,8.71e-17,8;UBERON:0000982,8.71e-17,8;UBERON:0004770,8.71e-17,8;UBERON:0002135,8.63e-16,1;UBERON:0004913,3.66e-15,1;UBERON:0003703,3.66e-15,1;UBERON:0001174,3.66e-15,1;UBERON:0004914,3.66e-15,1;UBERON:0000075,1.09e-08,16;UBERON:0003127,1.39e-08,2;UBERON:0002133,1.50e-08,2;UBERON:0000341,1.86e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,1.48519623552056,1.98838425436749,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0.24666754841716,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.716468181622786,0.871901815541886,0.383382679165211,0,0,0,0,0,0.380987365753014,0,0,0,0.616964956219941,3.00343057843917,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.88919160251872,0,0.271265023699736,0.207970861530807,0,0,0.35142424497814,0.601892199455438,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0.307007349452259,0,1.07420244868274,0.725083469571143,0,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.139423744278603,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.86494757262552,1.46190729307638,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0.330991955875499,0.313932918407225,1.19472429772959,0,0,0,0.0979923974143777,0,0.17472666824203,0,0.19351266257817,0.219267951258557,0,0,1.3238419003725,0,0.137041924646751,0,0,0,0,0.85381197895741,0,0.72045208577053,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,2.23425921017803,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0.171086837884329,0,0,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0,0.754703705257725,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59996218756479,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,1.03499260351932,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0,0,0,1.66847102838104,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.294450700845729,0.609589624911347,0,0,0,0.485710993059139,0,1.59160620129095,0,0,0,0.754814217833368,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66645102024618,0,0.0620747142958579,0,0,0.202117188958219,0.217716747896961,0,0,0.0717222053926763,2.32862249582209,0.407016343054873,0,0,0.0898252021065869,0,0,0.813792356631477,0,0,0 | |||
|short_description=p@chr2:53161632..53161661,- | |||
}} |
Latest revision as of 10:45, 29 July 2015
Short description: | p@chr2:53161632..53161661, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:53161632..53161661, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 2.22e-29 | 2 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 7.00e-43 | 3 |
skeletal tissue | 7.00e-43 | 3 |
annulus fibrosus | 2.22e-29 | 2 |
fibrocartilage | 2.22e-29 | 2 |
annulus fibrosus disci intervertebralis | 2.22e-29 | 2 |
intervertebral cartilage | 1.98e-26 | 5 |
symphysis | 1.98e-26 | 5 |
nonsynovial joint | 1.98e-26 | 5 |
fibrous joint | 1.98e-26 | 5 |
cartilaginous joint | 1.98e-26 | 5 |
developing mesenchymal condensation | 1.98e-26 | 5 |
pre-cartilage condensation | 1.98e-26 | 5 |
cartilaginous condensation | 1.98e-26 | 5 |
cartilage element | 1.98e-26 | 5 |
post-cranial axial skeletal system | 1.98e-26 | 5 |
vertebral column | 1.98e-26 | 5 |
intervertebral disk | 1.98e-26 | 5 |
intervertebral joint | 1.98e-26 | 5 |
articulation | 8.71e-17 | 8 |
skeletal joint | 8.71e-17 | 8 |
articular system | 8.71e-17 | 8 |
mitral valve | 8.63e-16 | 1 |
hepatopancreatic ampulla | 3.66e-15 | 1 |
extrahepatic bile duct | 3.66e-15 | 1 |
common bile duct | 3.66e-15 | 1 |
duodenal papilla | 3.66e-15 | 1 |
subdivision of skeletal system | 1.09e-08 | 16 |
open tracheal system trachea | 1.39e-08 | 2 |
atrioventricular valve | 1.50e-08 | 2 |
throat | 1.86e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.38e-15 | 1 |
extraosseous chondrosarcoma | 2.38e-15 | 1 |
myxoid chondrosarcoma | 2.38e-15 | 1 |
extraskeletal myxoid chondrosarcoma | 2.38e-15 | 1 |
tubular adenocarcinoma | 3.08e-08 | 2 |