FFCP PHASE1:Hg19::chr20:12989596..12989632,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55304 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16253 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N2H1,Q9NUV7 | |||
|association_with_transcript=0bp_to_ENST00000476791,NM_018327,uc002wob.1,uc002woc.2,uc002wod.1_5end | |||
|cluster_id=chr20:12989596..12989632,+ | |||
|description=CAGE_peak_1_at_SPTLC3_5end | |||
|id=chr20:12989596..12989632,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.77e-23!511;UBERON:0000481!9.44e-16!347;UBERON:0000468!2.78e-14!659;UBERON:0000467!5.97e-14!625;UBERON:0002050!8.88e-14!605;UBERON:0005423!8.88e-14!605;UBERON:0000922!9.56e-14!612;UBERON:0000480!1.16e-13!626;UBERON:0000923!1.93e-13!604;UBERON:0005291!1.93e-13!604;UBERON:0006598!1.93e-13!604;UBERON:0002532!1.93e-13!604;UBERON:0001007!6.71e-13!155;UBERON:0001555!6.71e-13!155;UBERON:0007026!6.71e-13!155;UBERON:0004119!1.93e-12!169;UBERON:0000925!1.93e-12!169;UBERON:0006595!1.93e-12!169;UBERON:0004921!9.21e-10!129;UBERON:0004185!9.21e-10!129;UBERON:0007023!3.84e-09!115;UBERON:0000077!4.68e-09!130;UBERON:0001048!7.78e-09!168;UBERON:0000475!2.98e-08!365;UBERON:0002530!3.14e-08!59;UBERON:0002365!1.51e-07!31;UBERON:0002330!1.51e-07!31;UBERON:0000119!3.72e-07!312;UBERON:0000477!4.36e-07!286;UBERON:0000153!4.89e-07!129;UBERON:0007811!4.89e-07!129;UBERON:0000483!7.63e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;5.08e-08;31!UBERON:0002330;5.08e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.50e-14,145;UBERON:0001555,1.50e-14,145;UBERON:0007026,1.50e-14,145;UBERON:0011216,1.22e-13,223;UBERON:0004119,2.13e-13,160;UBERON:0000925,2.13e-13,160;UBERON:0006595,2.13e-13,160;UBERON:0002050,1.88e-12,564;UBERON:0005423,5.30e-12,581;UBERON:0000923,1.29e-11,560;UBERON:0010316,1.29e-11,560;UBERON:0005291,1.29e-11,560;UBERON:0006598,1.29e-11,560;UBERON:0010317,1.29e-11,560;UBERON:0002532,1.29e-11,560;UBERON:0000922,2.34e-11,592;UBERON:0004921,5.08e-11,118;UBERON:0001048,5.40e-10,160;UBERON:0007023,3.61e-09,114;UBERON:0002530,2.03e-08,59;UBERON:0002365,5.57e-08,31;UBERON:0002330,5.57e-08,31;UBERON:0001041,2.00e-07,87 | |||
|phase1_expression=2.18014055124668,1.92690471501885,1.12763523276777,0,2.23480547213644,0,2.53299878168311,0.631719873426831,1.56711376919903,0.245733936501509,0.697801167972428,2.18441372130172,1.84636884759917,68.5665595398658,26.5117900582333,0.672325146451775,0,1.46062018077475,0,8.61847406537515,2.85600967741954,4.70182082217132,4.57977579409691,4.65373045247806,2.51085279189606,0,0,0,0.393364276848904,1.15148819429164,0.928896739896456,5.51652734687356,1.204823675113,0,0,0.284338464974843,7.04641054403633,0,0,0.217010870715852,6.04571780447796,5.18229865630367,7.21211589375722,0.145398238779565,0,0,0,0.411167888021826,0,2.8769239232215,4.86705342405291,10.6417003449863,0.689491361473237,0,1.35426486594342,0,0.545812300115692,0.674170453335254,0,0.320929027076094,1.27867425159808,3.95821560224059,5.38551875578406,11.08184351385,0,0,0,2.76373531782418,3.12889751052121,9.99068685643537,1.21079900526674,0,0.316462387440884,0.422510572623884,0,0.209658645508376,0,0,0.16072558669708,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8954195721123,1.68152568894461,3.68737718685108,0.393419540227666,0,0.205601498999509,0,0,0.473447805734733,0,0.111410456885174,0,0,0,0,0,0.164437904603676,0,0.289803085735052,1.03800594213442,1.60524496853828,0,0,1.14966148080576,0.34362744548263,0,0.637130828648193,0,0,0,0.639933055772092,0,0.710331756132051,1.64225599384209,0.201606743224732,0,0.289648807765598,2.43806866313962,1.34140171940727,1.2786256184353,6.50590474292219,8.02140657017423,8.5459446186886,9.54343136461319,16.5455855902896,21.7430079477356,9.31263469342769,10.0131655690164,9.43049343583531,1.82147644146271,2.59549109949101,13.6309905334967,13.2338600347443,3.58986493400936,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0,0.516833518338658,2.49036383880697,0.33472061276467,0,1.52054421143703,0,0.367663080345869,0,3.03619076165871,1.34717623575702,0.675668882899933,0,0.949265659568129,0,0,0,2.18047026071267,0.496971951695318,1.51956613997496,4.36950296683622,7.74458876021797,2.83734705758686,2.24271040056923,1.06748995729705,1.48000529050296,11.5148083097914,0.808264032418128,2.94231425604226,5.90293967815232,5.76175924479999,0.234321431833797,1.24864030732128,0.570471821544449,0.896692083310806,3.40560046066918,0.809364721840658,3.93262258766296,11.8409419327838,5.77321291365309,13.3290257716737,4.75201142912821,1.23633464639278,0.910161361938026,0.718618141816238,3.87173062094352,4.62938523526267,3.87889761677856,1.75591048352335,1.22595118319608,0.751190294532984,0.680593098960126,2.33206526395521,1.2813443329114,0.847727604638247,1.80054657650641,0.824420233907511,4.89517026086695,1.8611685633159,1.85653965465393,0.779496041289589,2.01947019395292,0.736399189138395,15.8413135682436,0.710019185033229,0.604512589365842,1.3564847384839,2.70565194428616,3.54569956768085,1.72082757233402,0,0,1.2781333715647,1.24393266018445,0.504641701751257,1.82488679537915,1.56449532329816,6.43240938192885,4.14404764057442,6.50115099244771,6.49691533502627,5.44211280183282,5.39471008249925,6.50729780685401,6.39705041847885,5.01122721412534,6.40630671599961,5.12358971008625,5.29797955838434,6.92544882503503,0.738155454624648,0,1.6462960453256,1.47008711385542,26.6185573125845,18.6737171168749,23.0408063605748,0,70.5953637237472,15.9558063577629,23.9255622190804,4.49607013030478,4.12168786887686,9.62919829648708,0.651616610620649,0,5.77325368101093,4.28942498407784,3.75707821554629,0.144366447761074,0,0,0.790204397959275,0,1.96973604869918,0,1.0404181360211,5.62403003920662,4.03157107677263,3.68615252830205,8.14982556595919,7.84711633987697,5.36735750831296,4.43396914106349,4.31437326664808,2.28060927094849,2.01767934783746,2.14612136824846,0.444485260045183,0.763976851116555,0,0,0.102827492703324,0.300343057843917,0.285826432630578,4.48524337381443,1.74384027533312,9.46063887090255,1.16344544182,0,0,0,0,0,1.41849132023278,0.532844358032199,4.71827379071887,0,2.46972101034231,0.977208552881205,1.42156779497018,0,9.94749944296634,5.22920075160176,4.59875759437462,2.43247561282381,2.00902836572851,4.21667878966063,4.55287225434007,11.4861935834114,7.13184525203592,7.38384664004654,18.0819163844337,13.2505112797523,0,0.788123040807709,0.215627574859517,0.385029108839245,1.27047312111232,0,0.773288812777695,0.502548796003046,1.91381625495949,0,0,0,41.8377986762267,12.5042630264919,12.2069260664881,0.623912584592421,5.88815663030634,1.41932173530541,7.02848489956279,5.71797589482666,4.5481500811197,5.17365356462525,7.3064815838898,3.13427586520895,3.30157734978715,0.783204629850962,2.05886054286514,0.206768026122887,0.431428401637234,0.106727557803444,0.909382714338778,4.99306318531491,2.41912234663744,0.992431231275107,1.2276957863045,0.280660094433074,2.05022638809122,0,0.804269605718038,0,0.308419387605311,0.355123450626254,9.36249578557424,1.03850885836724,3.83494248917865,22.3589981744501,3.00759705454927,0.920809889358963,2.87036120411517,0.546273504020151,2.36023946926963,0.451199612907412,2.6185214615501,0,0,2.5332390934290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| |||
|short_description=p1@SPTLC3 | |||
}} |
Latest revision as of 04:23, 20 September 2015
Short description: | p1@SPTLC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPTLC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000476791, NM_018327, uc002wob.1, uc002woc.2, uc002wod.1_5end |
EntrezGene: | SPTLC3 |
HGNC: | 16253 |
UniProt: | Q8N2H1Q9NUV7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
digestive system | 1.50e-14 | 145 |
digestive tract | 1.50e-14 | 145 |
primitive gut | 1.50e-14 | 145 |
organ system subdivision | 1.22e-13 | 223 |
endoderm-derived structure | 2.13e-13 | 160 |
endoderm | 2.13e-13 | 160 |
presumptive endoderm | 2.13e-13 | 160 |
embryonic structure | 1.88e-12 | 564 |
developing anatomical structure | 5.30e-12 | 581 |
germ layer | 1.29e-11 | 560 |
germ layer / neural crest | 1.29e-11 | 560 |
embryonic tissue | 1.29e-11 | 560 |
presumptive structure | 1.29e-11 | 560 |
germ layer / neural crest derived structure | 1.29e-11 | 560 |
epiblast (generic) | 1.29e-11 | 560 |
embryo | 2.34e-11 | 592 |
subdivision of digestive tract | 5.08e-11 | 118 |
primordium | 5.40e-10 | 160 |
adult organism | 3.61e-09 | 114 |
gland | 2.03e-08 | 59 |
exocrine gland | 5.57e-08 | 31 |
exocrine system | 5.57e-08 | 31 |
foregut | 2.00e-07 | 87 |