FFCP PHASE1:Hg19::chr1:199996859..199996870,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2494 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7984 | |||
|TSSclassifier=strong | |||
|UniProt=E9PQH2 | |||
|association_with_transcript=74bp_to_ENST00000474307_5end | |||
|cluster_id=chr1:199996859..199996870,+ | |||
|coexpression_cluster_id=C1345 | |||
|description=CAGE_peak_8_at_NR5A2_5end | |||
|id=chr1:199996859..199996870,+ | |||
|ontology_enrichment_celltype=CL:0000181!8.81e-21!12;CL:0000417!8.81e-21!12;CL:0000668!8.81e-21!12;CL:0000414!8.81e-21!12;CL:0000412!8.81e-21!12;CL:0000182!8.81e-21!12;CL:0000223!1.21e-12!59;CL:0002563!2.96e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.21e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.76e-11,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.44e-35!27;UBERON:0005409!1.18e-31!35;UBERON:0004921!3.94e-25!129;UBERON:0004185!3.94e-25!129;UBERON:0009854!1.47e-23!23;UBERON:0000059!3.15e-23!11;UBERON:0002107!8.16e-23!19;UBERON:0006925!8.16e-23!19;UBERON:0008836!8.16e-23!19;UBERON:0009856!1.09e-20!26;UBERON:0005057!1.32e-20!26;UBERON:0001007!2.99e-20!155;UBERON:0001555!2.99e-20!155;UBERON:0007026!2.99e-20!155;UBERON:0001155!4.64e-20!9;UBERON:0008835!1.46e-19!22;UBERON:0003894!1.46e-19!22;UBERON:0004119!3.07e-18!169;UBERON:0000925!3.07e-18!169;UBERON:0006595!3.07e-18!169;UBERON:0000949!4.01e-17!45;UBERON:0007499!4.37e-17!25;UBERON:0009497!4.37e-17!25;UBERON:0000015!4.37e-17!25;UBERON:0002423!4.37e-17!25;UBERON:0006235!4.37e-17!25;UBERON:0004161!4.37e-17!25;UBERON:0003929!8.57e-17!54;UBERON:0002368!5.84e-15!35;UBERON:0002365!1.43e-13!31;UBERON:0002330!1.43e-13!31;UBERON:0004907!2.52e-13!5;UBERON:0002108!3.79e-12!14;UBERON:0000077!7.22e-11!130;UBERON:0002530!2.33e-10!59;UBERON:0005911!2.53e-10!82;UBERON:0001154!2.29e-08!1;UBERON:0001153!2.29e-08!1;UBERON:0007029!2.46e-08!1;UBERON:0001242!2.96e-08!4;UBERON:0001262!2.96e-08!4;UBERON:0004786!2.96e-08!4;UBERON:0004808!2.96e-08!4;UBERON:0001277!2.96e-08!4;UBERON:0001041!3.21e-08!98;UBERON:0001052!4.88e-08!4;UBERON:0000481!1.45e-07!347;UBERON:0005172!3.57e-07!55;UBERON:0005173!3.57e-07!55;UBERON:0003350!9.16e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.93e-38;17!UBERON:0005409;7.08e-30;22!UBERON:0002108;2.92e-26;4!UBERON:0004921;3.55e-18;33!UBERON:0001155;7.35e-15;9!UBERON:0000059;2.84e-12;11!UBERON:0002107;3.93e-12;19!UBERON:0006925;3.93e-12;19!UBERON:0002423;2.76e-09;25!UBERON:0001007;3.67e-09;81!UBERON:0002365;1.79e-07;31!UBERON:0002330;1.79e-07;31!UBERON:0001555;3.00e-07;54!UBERON:0002368;3.56e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.41e-38,17;UBERON:0005409,1.90e-26,25;UBERON:0002108,2.35e-26,4;UBERON:0004921,5.95e-16,118;UBERON:0001155,6.85e-15,9;UBERON:0001007,9.03e-13,145;UBERON:0001555,9.03e-13,145;UBERON:0007026,9.03e-13,145;UBERON:0000059,2.69e-12,11;UBERON:0002107,4.16e-12,19;UBERON:0006925,4.16e-12,19;UBERON:0008836,4.16e-12,19;UBERON:0004119,1.85e-11,160;UBERON:0000925,1.85e-11,160;UBERON:0006595,1.85e-11,160;UBERON:0008835,1.70e-10,22;UBERON:0003894,1.70e-10,22;UBERON:0009854,4.74e-10,23;UBERON:0007499,2.88e-09,25;UBERON:0009497,2.88e-09,25;UBERON:0000015,2.88e-09,25;UBERON:0002423,2.88e-09,25;UBERON:0006235,2.88e-09,25;UBERON:0004161,2.88e-09,25;UBERON:0011216,3.08e-09,223;UBERON:0003929,3.67e-09,54;UBERON:0009856,6.41e-09,26;UBERON:0000949,7.79e-08,45;UBERON:0002365,1.62e-07,31;UBERON:0002330,1.62e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,1.18157981336281,0,5.04252598026766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05461064305758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,1.99052386215701,3.18447232212021,2.4441205797345,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,1.18112977817699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90757005616546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731507549893617,0,0,0,0.485710993059139,0,0,0,0,0,0,5.32501690944818,1.96703604453562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0.449126010532934,0,0,0,0,0,0 | |||
|short_description=p8@NR5A2 | |||
}} |
Latest revision as of 15:46, 19 September 2015
Short description: | p8@NR5A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_NR5A2_5end |
Coexpression cluster: | C1345_Intestinal_Hepatocyte_small_testis_colon_Prostate_temporal |
Association with transcript: | 74bp_to_ENST00000474307_5end |
EntrezGene: | NR5A2 |
HGNC: | 7984 |
UniProt: | E9PQH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.76e-11 | 12 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.41e-38 | 17 |
gastrointestinal system | 1.90e-26 | 25 |
small intestine | 2.35e-26 | 4 |
subdivision of digestive tract | 5.95e-16 | 118 |
colon | 6.85e-15 | 9 |
digestive system | 9.03e-13 | 145 |
digestive tract | 9.03e-13 | 145 |
primitive gut | 9.03e-13 | 145 |
large intestine | 2.69e-12 | 11 |
liver | 4.16e-12 | 19 |
digestive gland | 4.16e-12 | 19 |
liver bud | 4.16e-12 | 19 |
endoderm-derived structure | 1.85e-11 | 160 |
endoderm | 1.85e-11 | 160 |
presumptive endoderm | 1.85e-11 | 160 |
hepatic diverticulum | 1.70e-10 | 22 |
liver primordium | 1.70e-10 | 22 |
digestive tract diverticulum | 4.74e-10 | 23 |
epithelial sac | 2.88e-09 | 25 |
epithelium of foregut-midgut junction | 2.88e-09 | 25 |
anatomical boundary | 2.88e-09 | 25 |
hepatobiliary system | 2.88e-09 | 25 |
foregut-midgut junction | 2.88e-09 | 25 |
septum transversum | 2.88e-09 | 25 |
organ system subdivision | 3.08e-09 | 223 |
gut epithelium | 3.67e-09 | 54 |
sac | 6.41e-09 | 26 |
endocrine system | 7.79e-08 | 45 |
exocrine gland | 1.62e-07 | 31 |
exocrine system | 1.62e-07 | 31 |