FFCP PHASE1:Hg19::chr1:13840242..13840268,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27005 | |||
|TSSclassifier=strong | |||
|UniProt=Q5VT99 | |||
|association_with_transcript=0bp_to_NM_001010847,uc001avb.2_5end | |||
|cluster_id=chr1:13840242..13840268,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_2_at_LRRC38_5end | |||
|id=chr1:13840242..13840268,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002144;5.59e-16;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,6.20e-16,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;8.67e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,8.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.67e-27!115;UBERON:0001017!5.67e-17!82;UBERON:0005743!7.07e-17!86;UBERON:0001049!3.74e-15!57;UBERON:0005068!3.74e-15!57;UBERON:0006241!3.74e-15!57;UBERON:0007135!3.74e-15!57;UBERON:0000073!2.70e-14!94;UBERON:0001016!2.70e-14!94;UBERON:0002346!3.36e-14!90;UBERON:0000955!4.39e-13!69;UBERON:0006238!4.39e-13!69;UBERON:0003075!5.57e-13!86;UBERON:0007284!5.57e-13!86;UBERON:0002616!9.02e-12!59;UBERON:0000477!1.17e-11!286;UBERON:0004111!4.31e-11!241;UBERON:0003076!5.10e-11!15;UBERON:0003057!5.10e-11!15;UBERON:0000025!6.42e-11!194;UBERON:0000483!2.13e-10!309;UBERON:0000153!3.60e-10!129;UBERON:0007811!3.60e-10!129;UBERON:0000119!4.00e-10!312;UBERON:0000924!4.15e-10!173;UBERON:0006601!4.15e-10!173;UBERON:0004121!3.42e-09!169;UBERON:0002298!8.53e-09!8;UBERON:0000033!3.23e-08!123;UBERON:0008814!8.37e-08!15;UBERON:0002780!1.05e-07!41;UBERON:0001890!1.05e-07!41;UBERON:0006240!1.05e-07!41;UBERON:0000922!1.33e-07!612;UBERON:0000468!1.67e-07!659;UBERON:0003080!1.99e-07!42;UBERON:0004733!3.20e-07!12;UBERON:0002028!3.20e-07!12;UBERON:0007277!3.20e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;5.59e-16;3!UBERON:0001915;5.59e-16;3!UBERON:0001982;5.59e-16;3!UBERON:0001905;2.92e-12;2!UBERON:0002757;2.92e-12;2!UBERON:0010134;2.92e-12;2!UBERON:0005408;2.92e-12;2!UBERON:0001899;2.92e-12;2!UBERON:0005090;4.05e-12;2!UBERON:0001630;4.05e-12;2!UBERON:0000341;2.60e-11;2!UBERON:0001723;5.22e-08;3!UBERON:0001033;5.22e-08;3!UBERON:0003513;4.27e-07;7!UBERON:0002426;6.58e-07;1!UBERON:0003831;6.58e-07;1!UBERON:0003898;6.58e-07;1!UBERON:0004830;6.58e-07;1!UBERON:0003830;6.58e-07;1!UBERON:0005175;6.58e-07;1!UBERON:0001774;6.58e-07;1!UBERON:0001103;6.58e-07;1!UBERON:0001389;7.15e-07;1!UBERON:0000026;7.15e-07;1!UBERON:0008784;7.15e-07;1!UBERON:0006058;7.15e-07;1!UBERON:0003663;7.15e-07;1!UBERON:0004256;7.15e-07;1!UBERON:0004708;7.15e-07;1!UBERON:0002101;7.15e-07;1!UBERON:0004709;7.15e-07;1!UBERON:0002529;7.15e-07;1!UBERON:0010538;7.15e-07;1!UBERON:0003661;7.15e-07;1!UBERON:0010890;7.15e-07;1!UBERON:0002471;7.15e-07;1!UBERON:0001383;7.15e-07;1!UBERON:0010758;7.15e-07;1!UBERON:0010707;7.15e-07;1!UBERON:0000978;7.15e-07;1!UBERON:0002103;7.15e-07;1!UBERON:0001665;7.15e-07;1!UBERON:0003823;7.15e-07;1!UBERON:0000154;7.15e-07;1!UBERON:0010709;7.15e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,6.20e-16,3;UBERON:0001915,6.20e-16,3;UBERON:0001982,6.20e-16,3;UBERON:0001905,3.00e-12,2;UBERON:0002757,3.00e-12,2;UBERON:0010134,3.00e-12,2;UBERON:0005408,3.00e-12,2;UBERON:0001899,3.00e-12,2;UBERON:0005090,3.94e-12,2;UBERON:0001630,3.94e-12,2;UBERON:0000341,2.67e-11,2;UBERON:0001723,4.87e-08,3;UBERON:0001033,4.87e-08,3;UBERON:0010056,4.87e-08,3;UBERON:0003513,4.32e-07,7;UBERON:0002426,6.59e-07,1;UBERON:0003831,6.59e-07,1;UBERON:0003898,6.59e-07,1;UBERON:0004830,6.59e-07,1;UBERON:0003830,6.59e-07,1;UBERON:0005175,6.59e-07,1;UBERON:0001774,6.59e-07,1;UBERON:0001103,6.59e-07,1;UBERON:0010084,6.59e-07,1;UBERON:0005418,6.96e-07,1;UBERON:0001389,6.96e-07,1;UBERON:0000026,6.96e-07,1;UBERON:0008784,6.96e-07,1;UBERON:0006058,6.96e-07,1;UBERON:0003663,6.96e-07,1;UBERON:0004256,6.96e-07,1;UBERON:0004708,6.96e-07,1;UBERON:0002101,6.96e-07,1;UBERON:0004709,6.96e-07,1;UBERON:0002529,6.96e-07,1;UBERON:0010538,6.96e-07,1;UBERON:0003661,6.96e-07,1;UBERON:0010890,6.96e-07,1;UBERON:0002471,6.96e-07,1;UBERON:0001383,6.96e-07,1;UBERON:0004357,6.96e-07,1;UBERON:0004347,6.96e-07,1;UBERON:0005420,6.96e-07,1;UBERON:0005732,6.96e-07,1;UBERON:0010758,6.96e-07,1;UBERON:0010707,6.96e-07,1;UBERON:0000978,6.96e-07,1;UBERON:0002103,6.96e-07,1;UBERON:0001665,6.96e-07,1;UBERON:0003823,6.96e-07,1;UBERON:0000154,6.96e-07,1;UBERON:0010709,6.96e-07,1;UBERON:0005733,6.96e-07,1;UBERON:0005730,6.96e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0,0,2.43317435151318,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,1.61131726843659,3.04108842287405,3.1728067481262,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,14.9448594021587,0.74000264525148,0,0.404132016209064,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794025282120147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15493158208859,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385076685522074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,4.64407282668854,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,2.95547618953547,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.2876400081588,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0.387956065953678,0,2.03382666702479,0,0.397429223405979,0.253243183823515,0.782205530939212,0.240476460754601,0.213452994739353,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0,3.96329871896644,0,0,0,0,0,0,0,0.136203406111576,0.321506296930038,0.137539436597234,0,0,0,0.242998226632099,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0.573409195690071,0.221858103073705,0.248385611765534,22.5508274946056,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.76347396132188,0,0,0,0.630893960010027,0,0,0,0.0642292250964595,1.41696576325585,0.159633859057151,1.02558182120378,0,0.760729777106397,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0.60511520611056,0,0,19.4888581837015,0,0.540300676947157,0,0,0.253663240775627,0,0,6.94695649745012,25.3254591877854,0,49.2845689008024,94.4957259434895,0,0,0,0,0,0.135939465953663,0.197318320688547,0,1.89093383216518,0,0,0,0,0,0,0.571812353413251,8.69074864529996,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,8.5998504507969,0,0,0,25.8971534875158,24.3310852249305,49.8720205475426,1.45713297917742,0,0,0.118920090777569,0,0,0,0,0,0,0,0,3.53355240806901,0.594092800654172,0.4226557275834,0,0,0,0,0,0,0,0,0.458729283404541,0.430018749454354,3.31320280605688,0.135982980381829,0,0,0,0,0,0,0.218531143927391,0,0.101988829741982,0.26721740526556,0.275684698604535,0.752122617877125,0.378893491091197,0,0,0.103432995861895,3.83821167421766,2.14257988317366,0.387533459016037,0.124149428591716,1.12131862580613,0.12729431655633,0.404234377916439,3.9189014621453,7.1868993227909,0.134704106029175,0.0717222053926763,1.33064142618405,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p2@LRRC38 | |||
}} |
Latest revision as of 15:38, 16 September 2015
Short description: | p2@LRRC38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC38_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_NM_001010847, uc001avb.2_5end |
EntrezGene: | LRRC38 |
HGNC: | 27005 |
UniProt: | Q5VT99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 6.20e-16 | 3 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 8.67e-07 | 1 |