FFCP PHASE1:Hg19::chr19:45982101..45982132,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2067 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3433 | |||
|TSSclassifier=strong | |||
|UniProt=B3KRR0 | |||
|association_with_transcript=-15bp_to_ENST00000423698,uc002pbu.1_5end | |||
|cluster_id=chr19:45982101..45982132,- | |||
|description=CAGE_peak_6_at_ERCC1_5end | |||
|id=chr19:45982101..45982132,- | |||
|ontology_enrichment_celltype=CL:0000055!5.91e-17!180;CL:0000680!6.91e-15!57;CL:0000056!6.91e-15!57;CL:0000355!6.91e-15!57;CL:0000359!2.89e-14!32;CL:0000187!1.11e-13!54;CL:0000192!1.59e-13!42;CL:0000514!1.59e-13!42;CL:0000183!3.37e-13!59;CL:0000393!1.78e-12!60;CL:0000211!1.78e-12!60;CL:0000057!6.99e-10!75;CL:0000723!1.33e-08!436;CL:0000222!1.59e-08!119;CL:0000048!3.43e-08!430;CL:0002371!9.12e-08!591;CL:0000034!2.23e-07!444;CL:0002539!3.12e-07!10;CL:0002620!6.56e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.32e-20;32!CL:0000192;6.55e-13;43!CL:0002539;3.67e-11;10!CL:0000187;1.44e-08;55!CL:0002620;5.30e-08;23!CL:0002540;9.13e-08;6!CL:0000723;1.34e-07;61!CL:0000057;9.58e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.23e-21,32;CL:0000192,3.69e-18,43;CL:0000514,3.69e-18,43;CL:0000680,1.71e-16,58;CL:0000056,1.71e-16,58;CL:0000355,1.71e-16,58;CL:0000187,2.75e-15,55;CL:0000393,6.60e-14,61;CL:0000211,6.60e-14,61;CL:0000723,6.69e-13,433;CL:0000048,1.68e-12,427;CL:0000034,4.15e-12,441;CL:0000057,1.64e-11,76;CL:0002539,2.90e-11,10;CL:0002620,3.71e-08,23;CL:0000222,4.93e-08,121;CL:0002540,1.00e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000514;6.55e-13;43!CL:0000355;2.16e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.66e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.49e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.35e-18!83;UBERON:0002329!9.35e-18!83;UBERON:0003077!9.35e-18!83;UBERON:0003059!9.35e-18!83;UBERON:0007282!9.35e-18!83;UBERON:0009618!9.35e-18!83;UBERON:0007285!9.35e-18!83;UBERON:0004290!1.63e-15!70;UBERON:0000486!6.27e-15!82;UBERON:0001637!1.13e-12!42;UBERON:0003509!1.13e-12!42;UBERON:0004572!1.13e-12!42;UBERON:0001134!1.81e-12!61;UBERON:0002036!1.81e-12!61;UBERON:0003082!1.81e-12!61;UBERON:0002385!9.30e-12!63;UBERON:0001015!9.30e-12!63;UBERON:0000383!9.30e-12!63;UBERON:0004573!1.05e-10!33;UBERON:0004571!1.05e-10!33;UBERON:0005256!4.04e-09!143;UBERON:0000475!1.17e-08!365;UBERON:0001981!1.96e-07!60;UBERON:0007500!1.96e-07!60;UBERON:0004537!1.96e-07!60;UBERON:0006965!1.96e-07!60;UBERON:0000055!2.54e-07!69;UBERON:0004237!3.12e-07!10;UBERON:0004695!3.12e-07!10;UBERON:0002111!3.12e-07!10;UBERON:0004178!3.12e-07!10;UBERON:0003102!4.75e-07!95;UBERON:0002049!8.63e-07!79;UBERON:0007798!8.63e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.50e-14;33!UBERON:0004571;2.50e-14;33!UBERON:0001637;1.31e-11;42!UBERON:0003509;1.31e-11;42!UBERON:0004572;1.31e-11;42!UBERON:0004237;3.67e-11;10!UBERON:0004695;3.67e-11;10!UBERON:0002111;3.67e-11;10!UBERON:0004178;3.67e-11;10!UBERON:0003102;1.04e-07;50!UBERON:0003914;2.30e-07;74!UBERON:0000947;2.69e-07;21!UBERON:0010191;2.69e-07;21!UBERON:0002067;3.19e-07;9!UBERON:0007500;3.31e-07;56!UBERON:0001981;3.31e-07;56!UBERON:0004537;3.31e-07;56!UBERON:0002199;8.64e-07;46!UBERON:0002416;8.64e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.38e-21,78;UBERON:0000486,3.82e-20,83;UBERON:0002329,8.77e-20,71;UBERON:0003059,8.77e-20,71;UBERON:0007282,8.77e-20,71;UBERON:0004290,8.77e-20,71;UBERON:0009618,8.77e-20,71;UBERON:0003077,2.51e-19,72;UBERON:0007285,2.51e-19,72;UBERON:0007524,6.97e-19,73;UBERON:0001637,1.91e-18,42;UBERON:0003509,1.91e-18,42;UBERON:0004572,1.91e-18,42;UBERON:0004573,1.35e-16,33;UBERON:0004571,1.35e-16,33;UBERON:0001134,9.39e-15,62;UBERON:0002036,9.39e-15,62;UBERON:0003082,9.39e-15,62;UBERON:0002385,5.69e-14,64;UBERON:0001015,5.69e-14,64;UBERON:0000383,5.69e-14,64;UBERON:0000055,1.25e-12,68;UBERON:0007500,1.37e-12,59;UBERON:0001981,1.37e-12,59;UBERON:0004537,1.37e-12,59;UBERON:0006965,1.37e-12,59;UBERON:0004237,2.90e-11,10;UBERON:0004695,2.90e-11,10;UBERON:0002111,2.90e-11,10;UBERON:0004178,2.90e-11,10;UBERON:0003102,2.22e-10,99;UBERON:0005256,4.01e-10,122;UBERON:0004872,4.02e-10,83;UBERON:0002049,1.15e-09,78;UBERON:0007798,1.15e-09,78;UBERON:0002199,1.86e-09,46;UBERON:0002416,1.86e-09,46;UBERON:0003914,8.72e-09,117;UBERON:0002097,9.52e-08,41;UBERON:0000490,1.59e-07,148;UBERON:0000947,2.60e-07,21;UBERON:0010191,2.60e-07,21;UBERON:0003104,2.85e-07,160;UBERON:0009142,2.85e-07,160;UBERON:0002204,2.89e-07,167;UBERON:0002067,3.55e-07,9;UBERON:0004016,3.55e-07,9;UBERON:0010083,3.55e-07,9;UBERON:0004535,3.63e-07,109;UBERON:0002100,5.07e-07,199 | |||
|phase1_expression=0.908391896352783,0,0.704772020479856,0,0,0,0,5.68547886084148,0,5.40614660303319,1.39560233594486,0,0,0.37129905888014,0,2.01697543935533,3.01347264011988,4.38186054232424,1.95173119516203,0.861847406537515,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0.458480434487708,0.410502947249729,0.865818594450472,0,0,0.154816123316076,4.59710612239464,1.204823675113,0,0.774672005803016,0.426507697462265,0,0,0.200544447470142,0,0,0,0.257575567634187,0.145398238779565,0,0,0.232429036905685,0.822335776043652,0,2.3015391385772,0,0.47296445977717,0.344745680736619,0,0,0.376484679085209,1.09162460023138,0.224723484445085,0,0,0.639337125799041,0,0.598390972864896,0.426224750532694,0,0,0,0.75374599577023,1.0429658368404,1.73751075764093,0,0,0,0,0,0,0,0,0,0.285012743741249,0.19891667719909,0,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0.473447805734733,0,0.557052284425868,0,0,0,0.128091319725675,0.520237390239513,0,0,0,0,0,1.04535523804977,0.453237370790265,0.383220493601921,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0,0.144824403882799,0,0,0.255725123687061,1.80719576192283,0,0.144846518960824,0,0,0.283604451492204,0,0.263504357079378,0.196468613246569,1.45718115317017,1.48313777113772,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0,0.419499436209906,0,0.417989933073621,0,0.35576626268671,0,0,0.760272105718513,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,3.06633274931766,0,0,0,0,1.3082821564276,1.49091585508596,1.64619665163954,3.44263870114369,0,1.06400514659507,0,2.1349799145941,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0.312160076830321,5.13424639390004,2.83952493048422,2.46612447151906,3.39933183173076,3.65172097425846,1.63323337003915,2.57952066354713,0.413303124703062,1.18800285728205,0.247266929278557,2.73048408581408,2.87447256726495,2.35670559535693,2.62748891731125,3.60183350129438,0.438977620880838,3.98434134538726,0.901428353439581,0.340296549480063,1.79389635688862,0,0.847727604638247,2.10063767259082,0.412210116953756,0.257640540045629,0,2.86919764810153,1.75386609290158,2.27190396819703,0.644349290496095,0,1.42003837006646,1.10827308050404,2.88253006927829,1.35282597214308,1.63647672354501,1.14721838155602,0,0,0,0,0,0,0,1.28648187638577,4.14404764057442,0,0.721879481669586,0.118306800039844,0,0,0.220587945464788,0,0.237270619111097,0,0.392442930250692,0.38474715694639,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0.343135620597051,0.658501712451753,2.24803506515239,1.3068766413512,0.462942225792648,0,3.11980435583874,1.44331342025273,0.231860809950154,0.234817388471643,0,0.462985512576611,0,0.790204397959275,0,0,0,0,2.81201501960331,0.16798212819886,1.84307626415102,0.358234090811393,0.581267877027924,2.68367875415648,1.47798971368783,0,0,0.144119953416961,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0.300343057843917,0,0.560655421726804,0.87192013766656,1.68678057388185,0.387815147273333,0,5.071816515336,0.797814349754612,3.12022310734098,1.54324424557285,1.41849132023278,3.46348832720929,0,0,0,9.12061316022458,0,0.791951872933429,0.904318131178758,2.61460037580088,0.899756920638513,0,0,0,0.479249710983165,0,1.42636905040718,5.50168965336801,1.64381058040307,0.537182889719687,0,0.197030760201927,0.646882724578552,0.385029108839245,0,1.30139853857622,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0,0.24538298343828,0,0,0,0.892144943985809,0.473107245101804,0.234282829985426,0.601892199455438,0,0,0.664225598535437,1.10621501125022,0.347534457872331,0,0,0.206768026122887,0.431428401637234,0.106727557803444,0,1.66435439510497,0,0.248107807818777,0.920771839728375,0,0.768834895534206,0,1.44768529029247,0,6.01417805830357,3.19611105563629,1.14978018419333,5.71179872101983,6.2753604368378,0,0.601519410909855,0,0.459257792658427,2.1850940160806,0.655622074797121,0,1.38627606787947,0.784349769176855,1.46139224653261,0.105551628892876,0,0.170093705276516,0,1.54227252690289,1.89662506280697,1.50506932156456,1.78413391131527,2.49322802678617,0.671624264166535,0,0,0.512900250232778,0,0,0.206082023295445,1.28197250745681,1.32015199872941,0,0,0,0.193341436584244,0.924291702687866,0.921022048356777,1.51620229732984,0.429680979473094,0.435050081742686,1.10794615640931,0.0890320356467374,0,0.192190067365106,0.382838137483752,0,4.18360994367557,3.77774816196768,5.5762981612848,0.308033580176089,12.7753447276085,3.47973196830029,1.8532421910392,2.43312307461385,0,0.316379424718726,0.38126038784765,0.767693373934002,0,0.95460974377781,6.27958912159384,0.179872457583315,0,0.353437207037059,10.5134890418124,1.58510321173008,4.63384301862879,0.48763373908959,1.21856744815642,2.11300293513511,1.50149902548784,0,1.13008116620243,2.2054613741845,1.99031692572366,3.06915619677634,2.31510213706675,0,3.24656603140326,1.8589409885985,3.94373843545138,0.573645408816206,0,2.85336841185,21.6404249083065,0.211107635297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| |||
|short_description=p6@ERCC1 | |||
}} |
Latest revision as of 18:13, 18 September 2015
Short description: | p6@ERCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ERCC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -15bp_to_ENST00000423698, uc002pbu.1_5end |
EntrezGene: | ERCC1 |
HGNC: | 3433 |
UniProt: | B3KRR0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.23e-21 | 32 |
smooth muscle cell | 3.69e-18 | 43 |
smooth muscle myoblast | 3.69e-18 | 43 |
muscle precursor cell | 1.71e-16 | 58 |
myoblast | 1.71e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.71e-16 | 58 |
muscle cell | 2.75e-15 | 55 |
electrically responsive cell | 6.60e-14 | 61 |
electrically active cell | 6.60e-14 | 61 |
somatic stem cell | 6.69e-13 | 433 |
multi fate stem cell | 1.68e-12 | 427 |
stem cell | 4.15e-12 | 441 |
fibroblast | 1.64e-11 | 76 |
aortic smooth muscle cell | 2.90e-11 | 10 |
skin fibroblast | 3.71e-08 | 23 |
mesodermal cell | 4.93e-08 | 121 |
mesenchymal stem cell of the bone marrow | 1.00e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.49e-07 | 14 |