FFCP PHASE1:Hg19::chr17:38708568..38708590,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:38708568..38708590,+ | |||
|description=CAGE_peak_at_chr17:38708568..38708590,+ | |||
|id=chr17:38708568..38708590,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.24e-13!180;CL:0000057!1.65e-11!75;CL:0002540!2.92e-09!6;CL:0002334!3.43e-09!12;CL:0000569!6.08e-07!4;CL:0000011!6.08e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000569;1.08e-13;4!CL:0002602;2.03e-12;2!CL:0002195;4.88e-12;2!CL:0002571;4.88e-12;2!CL:0002540;4.14e-09;6!CL:0000515;2.59e-08;3!CL:0000134;1.17e-07;55!CL:0002581;7.55e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,6.64e-14,4;CL:0000011,6.64e-14,4;CL:0002195,1.58e-12,2;CL:0002571,1.58e-12,2;CL:0002602,2.79e-12,2;CL:0002540,3.62e-09,6;CL:0002581,6.76e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000011;1.08e-13;4!UBERON:0005425;7.55e-07;1 | |||
|ontology_enrichment_disease=DOID:2394!1.09e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2513;7.55e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,5.37e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000914!8.05e-08!83;UBERON:0002329!8.05e-08!83;UBERON:0003077!8.05e-08!83;UBERON:0003059!8.05e-08!83;UBERON:0007282!8.05e-08!83;UBERON:0009618!8.05e-08!83;UBERON:0007285!8.05e-08!83;UBERON:0005284!2.54e-07!5;UBERON:0002616!5.13e-07!59;UBERON:0002118!6.86e-07!5;UBERON:0004532!6.86e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0006444;2.03e-12;2!UBERON:0001995;2.03e-12;2!UBERON:0004715;2.03e-12;2!UBERON:0004905;1.97e-11;8!UBERON:0000982;1.97e-11;8!UBERON:0004770;1.97e-11;8!UBERON:0001434;8.55e-11;36!UBERON:0011135;9.58e-11;5!UBERON:0002216;9.58e-11;5!UBERON:0011134;9.58e-11;5!UBERON:0002209;9.58e-11;5!UBERON:0002213;9.58e-11;5!UBERON:0007844;9.58e-11;5!UBERON:0011138;9.58e-11;5!UBERON:0001130;9.58e-11;5!UBERON:0001066;9.58e-11;5!UBERON:0001468;9.58e-11;5!UBERON:0004765;6.85e-10;26!UBERON:0002418;1.45e-08;3!UBERON:0004755;1.45e-08;3!UBERON:0000075;1.47e-08;16!UBERON:0002371;7.38e-08;12!UBERON:0007195;2.35e-07;1!UBERON:0000941;7.55e-07;1!UBERON:0001785;7.55e-07;1!UBERON:0002464;7.55e-07;1!UBERON:0004904;7.55e-07;1!UBERON:0001021;7.55e-07;1!UBERON:0002204;8.59e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006444,2.79e-12,2;UBERON:0001995,2.79e-12,2;UBERON:0004715,2.79e-12,2;UBERON:0004905,2.43e-11,8;UBERON:0000982,2.43e-11,8;UBERON:0004770,2.43e-11,8;UBERON:0011135,1.05e-10,5;UBERON:0002216,1.05e-10,5;UBERON:0011134,1.05e-10,5;UBERON:0002209,1.05e-10,5;UBERON:0002213,1.05e-10,5;UBERON:0005856,1.05e-10,5;UBERON:0005866,1.05e-10,5;UBERON:0005863,1.05e-10,5;UBERON:0007844,1.05e-10,5;UBERON:0011138,1.05e-10,5;UBERON:0001130,1.05e-10,5;UBERON:0001066,1.05e-10,5;UBERON:0001468,1.05e-10,5;UBERON:0002418,1.79e-08,3;UBERON:0004755,1.79e-08,3;UBERON:0000075,1.85e-08,16;UBERON:0007195,2.36e-07,1;UBERON:0000941,7.15e-07,1;UBERON:0001785,7.15e-07,1;UBERON:0002464,7.15e-07,1;UBERON:0004904,7.15e-07,1;UBERON:0001021,7.15e-07,1;UBERON:0003902,7.15e-07,1;UBERON:0005425,7.15e-07,1;UBERON:0002384,7.42e-07,371 | |||
|phase1_expression=0.726713517082227,0,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0,2.10402800032079,1.32558950291166,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,1.00267582127178,0.869079113764942,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,2.78059279707759,0,0,0,0,0,0,0,0,1.81628913173918,0.576175924479999,0,0,0,1.04614076386261,0,0,0,2.85815839756851,0,0.723280468230358,0,0,0,0,0.505008341862199,0.250237039743928,1.38532057742091,0,1.22595118319608,0.600952235626387,0.226864366320042,0.179389635688862,0.427114777637135,0.847727604638247,0,0,0.515281080091258,0,0,0,0.757301322732344,0.460249493211497,0.161646056818812,0.710019185033229,0.10075209822764,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.448524337381443,0,0.07333828582095,0.258543431515556,0,0.845302752556,0,0,1.54324424557285,1.41849132023278,0.799266537048298,1.85871391755592,0,0,0.977208552881205,1.77695974371273,0.791951872933429,0,0,0,0,0,0,0.479249710983165,0,0,1.30303176000821,1.2328579353023,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,1.50051156317903,0.271265023699736,0.415941723061614,0,0.157702415033935,0.585707074963566,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0.496215615637554,1.53461973288062,0,0.128139149255701,0.511707249066704,0.482561763430822,1.48418066444991,0.154209693802656,0.710246901252508,0.164254312027618,0,1.16210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.616194468458578,0,0.137836572484531,0,0.435050081742686,0,0,0,0,0.127612712494584,0,0,4.09256050879832,0.6970372701606,0,0,0,0,0.143124886741991,0.744316738719335,1.2655176988749,0.38126038784765,0,0,0.318203247925937,0,0,0,0,0.404364963146632,0,0,0,0,0,0.272999822815972,0,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0.655894752046633,0.202910376962704,0.30982349809975,0,0.143411352204052,0,0,0.354761064070598,0.844430541190656,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0,1.55519793830904,0,0,0,0,0,5.55684950723184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.442317039724898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821432273351958,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.554645257684261,0.0620964029413835,0,0,0,0,0.235265819698172,0,0.144921028610825,1.34329322598187,0.233713309847224,1.10961172300523,9.65955326902955,0.754703705257725,0.889811221596536,0.686520205190771,6.65416064558252,1.86524640699337,2.21782724984451,0.63718706865481,0,0,1.65882483136342,0.265841714557995,0.521745061811734,0.150257608997218,0,0.406870733204662,4.18251916165887,0.107410557042488,0.928067519756987,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.705351887381368,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0,0.381382095467167,0,0,0.225630985047772,0,0,0,0,0,0.0675375846183947,0,0,0.253663240775627,0.546974809018219,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0.0644578879735772,0,0,0,0,0,0,0.573358332605805,0,0.0679914901909147,0,0,0.371995018166751,1.38652688589425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:38708568..38708590,+ | |||
}} |
Latest revision as of 16:32, 25 July 2015
Short description: | p@chr17:38708568..38708590, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38708568..38708590, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 6.64e-14 | 4 |
migratory trunk neural crest cell | 6.64e-14 | 4 |
hepatic stem cell | 1.58e-12 | 2 |
hepatic mesenchymal stem cell | 1.58e-12 | 2 |
annulus pulposus cell | 2.79e-12 | 2 |
mesenchymal stem cell of the bone marrow | 3.62e-09 | 6 |
perirenal preadipocyte | 6.76e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
annulus fibrosus | 2.79e-12 | 2 |
fibrocartilage | 2.79e-12 | 2 |
annulus fibrosus disci intervertebralis | 2.79e-12 | 2 |
articulation | 2.43e-11 | 8 |
skeletal joint | 2.43e-11 | 8 |
articular system | 2.43e-11 | 8 |
intervertebral cartilage | 1.05e-10 | 5 |
symphysis | 1.05e-10 | 5 |
nonsynovial joint | 1.05e-10 | 5 |
fibrous joint | 1.05e-10 | 5 |
cartilaginous joint | 1.05e-10 | 5 |
developing mesenchymal condensation | 1.05e-10 | 5 |
pre-cartilage condensation | 1.05e-10 | 5 |
cartilaginous condensation | 1.05e-10 | 5 |
cartilage element | 1.05e-10 | 5 |
post-cranial axial skeletal system | 1.05e-10 | 5 |
vertebral column | 1.05e-10 | 5 |
intervertebral disk | 1.05e-10 | 5 |
intervertebral joint | 1.05e-10 | 5 |
cartilage tissue | 1.79e-08 | 3 |
skeletal tissue | 1.79e-08 | 3 |
subdivision of skeletal system | 1.85e-08 | 16 |
stroma of bone marrow | 2.36e-07 | 1 |
cranial nerve II | 7.15e-07 | 1 |
cranial nerve | 7.15e-07 | 1 |
nerve trunk | 7.15e-07 | 1 |
nerve connecting eye with brain | 7.15e-07 | 1 |
nerve | 7.15e-07 | 1 |
retinal neural layer | 7.15e-07 | 1 |
presumptive neural retina | 7.15e-07 | 1 |
connective tissue | 7.42e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 5.37e-07 | 1 |