FFCP PHASE1:Hg19::chr14:22925581..22925592,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=17bp_to_uc001wdz.3,uc010tms.1_5end | |||
|cluster_id=chr14:22925581..22925592,+ | |||
|coexpression_cluster_id=C3411 | |||
|description=CAGE_peak_2_at_uc001wdz.3_5end,CAGE_peak_2_at_uc010tms.1_5end | |||
|id=chr14:22925581..22925592,+ | |||
|ontology_enrichment_celltype=CL:0000623!3.54e-12!3;CL:0000825!3.54e-12!3;CL:0000842!1.56e-10!3;CL:0000224!5.21e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0000623;2.74e-43;3!CL:0002127;6.93e-16;1!CL:0000911;6.93e-16;1!CL:0000814;6.93e-16;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,3.94e-43,3;CL:0000825,3.94e-43,3;CL:0002127,5.56e-16,1;CL:0000914,5.56e-16,1;CL:0000911,5.56e-16,1;CL:0000814,5.56e-16,1;CL:0002042,5.56e-16,1;CL:0002039,5.56e-16,1;CL:0002040,5.56e-16,1;CL:0002041,5.56e-16,1;CL:0000893,1.20e-08,2;CL:0002489,1.20e-08,2;CL:0000809,1.20e-08,2;CL:0000808,1.20e-08,2;CL:0000894,1.20e-08,2;CL:0000806,1.20e-08,2;CL:0000807,1.20e-08,2;CL:0000805,1.20e-08,2;CL:0002425,1.20e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002425;1.34e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.32e-22!15;UBERON:0000179!5.32e-22!15;UBERON:0000463!5.32e-22!15;UBERON:0004177!5.32e-13!7;UBERON:0002370!3.00e-09!4;UBERON:0005058!3.00e-09!4;UBERON:0009113!3.00e-09!4;UBERON:0003295!3.00e-09!4;UBERON:0005562!3.00e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.39e-15;15!UBERON:0000179;2.39e-15;15!UBERON:0000463;2.39e-15;15!UBERON:0002390;7.95e-10;32!UBERON:0002370;1.34e-08;2!UBERON:0005058;1.34e-08;2!UBERON:0009113;1.34e-08;2!UBERON:0002193;5.40e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.55e-15,4;UBERON:0005058,1.55e-15,4;UBERON:0009113,1.55e-15,4;UBERON:0003295,1.55e-15,4;UBERON:0005562,1.55e-15,4;UBERON:0000178,2.39e-15,15;UBERON:0000179,2.39e-15,15;UBERON:0000463,2.39e-15,15;UBERON:0003351,1.12e-10,6;UBERON:0004177,2.80e-09,7;UBERON:0005057,2.80e-09,7;UBERON:0000974,9.49e-07,10;UBERON:0003408,9.49e-07,10;UBERON:0001042,9.49e-07,10;UBERON:0009145,9.49e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0.167186495390678,0,1.4203434172042,1.94826728407911,0.111410456885174,0.294605907474837,0,0.270803863765016,0,0.260118695119756,0,0,0,0.444859689486181,0.267540828089713,1.04535523804977,0.339928028092699,0,0,0,0.637130828648193,0.651083453856419,0,0,0.255973222308837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.58672460779287,3.15249216323084,1.50939302401662,2.31017465303547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0.569647187174163,0.476463550915578,0,1.94541993357815,1.62009431171434,0.79312517629427,0,0,0,0,0,0,0,0,3.4470966623826,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68900326502395,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0.498635045700469,0,0,0,0,0.476809736941136,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0.469919589899268,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1648565819643,0.869046000142011,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p2@uc001wdz.3,p2@uc010tms.1 | |||
}} |
Latest revision as of 19:12, 24 July 2015
Short description: | p2@uc001wdz.3, p2@uc010tms.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc001wdz.3_5end, CAGE_peak_2_at_uc010tms.1_5end |
Coexpression cluster: | C3411_NK_anaplastic_acute_thymus_Natural_Whole_CD8 |
Association with transcript: | 17bp_to_uc001wdz.3, uc010tms.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 3.94e-43 | 3 |
pro-NK cell | 3.94e-43 | 3 |
innate effector T cell | 5.56e-16 | 1 |
immature NK T cell | 5.56e-16 | 1 |
effector T cell | 5.56e-16 | 1 |
mature NK T cell | 5.56e-16 | 1 |
immature NK T cell stage IV | 5.56e-16 | 1 |
immature NK T cell stage I | 5.56e-16 | 1 |
immature NK T cell stage II | 5.56e-16 | 1 |
immature NK T cell stage III | 5.56e-16 | 1 |
thymocyte | 1.20e-08 | 2 |
double negative thymocyte | 1.20e-08 | 2 |
double-positive, alpha-beta thymocyte | 1.20e-08 | 2 |
DN4 thymocyte | 1.20e-08 | 2 |
DN1 thymic pro-T cell | 1.20e-08 | 2 |
DN2 thymocyte | 1.20e-08 | 2 |
DN3 thymocyte | 1.20e-08 | 2 |
immature single positive thymocyte | 1.20e-08 | 2 |
early T lineage precursor | 1.20e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.55e-15 | 4 |
hemolymphoid system gland | 1.55e-15 | 4 |
thymic region | 1.55e-15 | 4 |
pharyngeal gland | 1.55e-15 | 4 |
thymus primordium | 1.55e-15 | 4 |
blood | 2.39e-15 | 15 |
haemolymphatic fluid | 2.39e-15 | 15 |
organism substance | 2.39e-15 | 15 |
pharyngeal epithelium | 1.12e-10 | 6 |
hemopoietic organ | 2.80e-09 | 7 |
immune organ | 2.80e-09 | 7 |
neck | 9.49e-07 | 10 |
gland of gut | 9.49e-07 | 10 |
chordate pharynx | 9.49e-07 | 10 |
pharyngeal region of foregut | 9.49e-07 | 10 |