FFCP PHASE1:Hg19::chr12:80794469..80794483,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:80794469..80794483,+ | |||
|coexpression_cluster_id=C3337 | |||
|description=CAGE_peak_at_chr12:80794469..80794483,+ | |||
|id=chr12:80794469..80794483,+ | |||
|ontology_enrichment_celltype=CL:0000064!1.98e-09!3;CL:0005012!1.98e-09!3;CL:0000067!1.98e-09!3;CL:0002304!1.98e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0000064;2.79e-07;3!CL:0000067;2.79e-07;3!CL:0005012;2.79e-07;3!CL:0002304;2.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,2.79e-07,3;CL:0000067,2.79e-07,3;CL:0005012,2.79e-07,3;CL:0002304,2.79e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.08e-19;1!UBERON:0006242;3.25e-19;1!UBERON:0010122;2.72e-10;2!UBERON:0003918;2.67e-08;10!UBERON:0007687;2.67e-08;10!UBERON:0003056;2.79e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!7.41e-39!59;UBERON:0001049!1.01e-37!57;UBERON:0005068!1.01e-37!57;UBERON:0006241!1.01e-37!57;UBERON:0007135!1.01e-37!57;UBERON:0002346!1.36e-36!90;UBERON:0003075!1.66e-36!86;UBERON:0007284!1.66e-36!86;UBERON:0000955!1.73e-36!69;UBERON:0006238!1.73e-36!69;UBERON:0005743!5.66e-32!86;UBERON:0002780!1.04e-31!41;UBERON:0001890!1.04e-31!41;UBERON:0006240!1.04e-31!41;UBERON:0001017!1.22e-31!82;UBERON:0003080!8.01e-31!42;UBERON:0000033!1.49e-30!123;UBERON:0003056!3.27e-30!61;UBERON:0001893!2.59e-29!34;UBERON:0000153!1.20e-28!129;UBERON:0007811!1.20e-28!129;UBERON:0001869!2.44e-28!32;UBERON:0000073!4.05e-28!94;UBERON:0001016!4.05e-28!94;UBERON:0002791!3.75e-27!33;UBERON:0002020!3.21e-26!34;UBERON:0003528!3.21e-26!34;UBERON:0002619!9.48e-26!22;UBERON:0007023!1.33e-25!115;UBERON:0001950!8.52e-25!20;UBERON:0000956!2.53e-22!25;UBERON:0000203!2.53e-22!25;UBERON:0000924!5.56e-21!173;UBERON:0006601!5.56e-21!173;UBERON:0004121!1.73e-20!169;UBERON:0001871!4.99e-13!7;UBERON:0000200!3.01e-12!6;UBERON:0004733!1.89e-10!12;UBERON:0002028!1.89e-10!12;UBERON:0007277!1.89e-10!12;UBERON:0000349!4.70e-10!5;UBERON:0001872!5.03e-10!5;UBERON:0000475!9.69e-10!365;UBERON:0004732!1.44e-09!13;UBERON:0001778!1.98e-09!3;UBERON:0001775!1.98e-09!3;UBERON:0000025!2.10e-09!194;UBERON:0002771!2.16e-09!3;UBERON:0001896!4.54e-09!3;UBERON:0005290!4.54e-09!3;UBERON:0010096!4.54e-09!3;UBERON:0000064!9.28e-09!219;UBERON:0002420!1.16e-08!9;UBERON:0007245!1.16e-08!9;UBERON:0010009!1.16e-08!9;UBERON:0010011!1.16e-08!9;UBERON:0000454!1.16e-08!9;UBERON:0000477!1.16e-08!286;UBERON:0000483!1.44e-08!309;UBERON:0002298!1.48e-08!8;UBERON:0000119!2.20e-08!312;UBERON:0004111!2.27e-08!241;UBERON:0003076!3.69e-08!15;UBERON:0003057!3.69e-08!15;UBERON:0000369!6.57e-08!4;UBERON:0002435!6.57e-08!4;UBERON:0000204!6.57e-08!4;UBERON:0010082!6.57e-08!4;UBERON:0000481!1.47e-07!347;UBERON:0001876!3.34e-07!2;UBERON:0000488!3.65e-07!4;UBERON:0000007!4.00e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;5.17e-25;3!UBERON:0005382;5.17e-25;3!UBERON:0001874;1.42e-19;1!UBERON:0000369;4.92e-19;4!UBERON:0002435;4.92e-19;4!UBERON:0000204;4.92e-19;4!UBERON:0009663;2.62e-11;7!UBERON:0000007;2.72e-10;2!UBERON:0001873;2.72e-10;2!UBERON:0002420;5.31e-09;9!UBERON:0000125;5.31e-09;9!UBERON:0007245;5.31e-09;9!UBERON:0002308;5.31e-09;9!UBERON:0010009;5.31e-09;9!UBERON:0010011;5.31e-09;9!UBERON:0000454;5.31e-09;9!UBERON:0001896;2.79e-07;3!UBERON:0002110;2.79e-07;3!UBERON:0001778;2.79e-07;3!UBERON:0001775;2.79e-07;3!UBERON:0005290;2.79e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,3.82e-25,3;UBERON:0005382,3.82e-25,3;UBERON:0001874,1.30e-19,1;UBERON:0000369,3.92e-19,4;UBERON:0002435,3.92e-19,4;UBERON:0000204,3.92e-19,4;UBERON:0010082,3.92e-19,4;UBERON:0009663,2.30e-11,7;UBERON:0001873,2.27e-10,2;UBERON:0010122,2.27e-10,2;UBERON:0000007,2.99e-10,2;UBERON:0007023,1.26e-09,114;UBERON:0002420,4.80e-09,9;UBERON:0000125,4.80e-09,9;UBERON:0007245,4.80e-09,9;UBERON:0002308,4.80e-09,9;UBERON:0010009,4.80e-09,9;UBERON:0010011,4.80e-09,9;UBERON:0000454,4.80e-09,9;UBERON:0003075,1.26e-07,82;UBERON:0007284,1.26e-07,82;UBERON:0003056,2.60e-07,61;UBERON:0002110,2.63e-07,3;UBERON:0006242,2.63e-07,3;UBERON:0001778,2.79e-07,3;UBERON:0001775,2.79e-07,3;UBERON:0002346,2.90e-07,86;UBERON:0001896,3.16e-07,3;UBERON:0005290,3.16e-07,3;UBERON:0010096,3.16e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.41802225746102,0.443458794925128,0.087834785693126,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,1.93866549219044,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,1.92954301800653,0,0,0,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0.379864775735272,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,0,0.91124334987037,0,2.67939404817274,11.3301910371596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0.1251909307065,1.14681839138014,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770750701157514,0,0.638535436228605,0,0,0.138314504928436,0.968853873791107,0,0,0,0,0.115525666150338,0,0,0,0,0.20170506870352,0,0,0,0,0.472763092328763,0,0.826747186004736,0.380494861163441,0.546974809018219,0,0,0.175871244359621,0,0,0,1.21393120847326,0.227662191351298,0,0,0,0.203909198930495,0.460409414939944,0,0,0.078493092850514,2.82808061848803,0,0,0,0,1.07214816264985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0.198950775161368,0.83244063544298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.38563769613817,0,0,0,0,0 | |||
|short_description=p@chr12:80794469..80794483,+ | |||
}} |
Latest revision as of 01:12, 25 September 2015
Short description: | p@chr12:80794469..80794483, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:80794469..80794483, + |
Coexpression cluster: | C3337_kidney_umbilical_retina_putamen_Ciliary_brain_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 2.79e-07 | 3 |
ciliated epithelial cell | 2.79e-07 | 3 |
multi-ciliated epithelial cell | 2.79e-07 | 3 |
non-pigmented ciliary epithelial cell | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 3.82e-25 | 3 |
dorsal striatum | 3.82e-25 | 3 |
putamen | 1.30e-19 | 1 |
corpus striatum | 3.92e-19 | 4 |
striatum | 3.92e-19 | 4 |
ventral part of telencephalon | 3.92e-19 | 4 |
future corpus striatum | 3.92e-19 | 4 |
telencephalic nucleus | 2.30e-11 | 7 |
caudate nucleus | 2.27e-10 | 2 |
future caudate nucleus | 2.27e-10 | 2 |
pituitary gland | 2.99e-10 | 2 |
adult organism | 1.26e-09 | 114 |
basal ganglion | 4.80e-09 | 9 |
neural nucleus | 4.80e-09 | 9 |
nuclear complex of neuraxis | 4.80e-09 | 9 |
nucleus of brain | 4.80e-09 | 9 |
aggregate regional part of brain | 4.80e-09 | 9 |
collection of basal ganglia | 4.80e-09 | 9 |
cerebral subcortex | 4.80e-09 | 9 |
neural plate | 1.26e-07 | 82 |
presumptive neural plate | 1.26e-07 | 82 |
pre-chordal neural plate | 2.60e-07 | 61 |
gallbladder | 2.63e-07 | 3 |
gall bladder primordium | 2.63e-07 | 3 |
ciliary epithelium | 2.79e-07 | 3 |
ciliary body | 2.79e-07 | 3 |
neurectoderm | 2.90e-07 | 86 |
medulla oblongata | 3.16e-07 | 3 |
myelencephalon | 3.16e-07 | 3 |
future myelencephalon | 3.16e-07 | 3 |