FFCP PHASE1:Hg19::chr12:18415665..18415682,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:18415665..18415682,+ | |||
|coexpression_cluster_id=C133 | |||
|description=CAGE_peak_at_chr12:18415665..18415682,+ | |||
|id=chr12:18415665..18415682,+ | |||
|ontology_enrichment_celltype=CL:0002327!6.24e-13!4;CL:0000362!4.07e-10!8;CL:0000317!7.62e-08!2;CL:1000448!7.62e-08!2;CL:0002308!7.62e-08!2;CL:0002140!7.62e-08!2;CL:0000066!3.05e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000362;4.38e-22;9!CL:0000317;1.37e-17;2!CL:1000448;1.37e-17;2!CL:0002308;1.37e-17;2!CL:0002140;1.37e-17;2!CL:0000312;1.18e-14;5!CL:0002159;3.64e-14;14!CL:0000240;2.61e-12;6!CL:0000311;2.61e-12;6!CL:0000079;2.61e-12;6!CL:0000237;2.61e-12;6!CL:0002327;3.00e-09;4!CL:0000622;1.46e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000362,5.84e-22,9;CL:0000317,1.49e-17,2;CL:1000448,1.49e-17,2;CL:0002308,1.49e-17,2;CL:0002140,1.49e-17,2;CL:0000312,1.53e-14,5;CL:0002159,4.37e-14,14;CL:0000240,3.25e-12,6;CL:0000311,3.25e-12,6;CL:0000079,3.25e-12,6;CL:0000237,3.25e-12,6;CL:0000036,3.25e-12,6;CL:0000357,3.25e-12,6;CL:0000114,3.25e-12,6;CL:0002327,2.89e-09,4;CL:0000622,1.50e-07,5;CL:0000076,5.38e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.07e-17;2!CL:0000357;2.61e-12;6!CL:0000114;2.61e-12;6!UBERON:0006242;1.43e-09;1!UBERON:0005754;1.43e-09;1!UBERON:0009143;3.67e-09;1 | |||
|ontology_enrichment_disease=DOID:1749!7.34e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:0060084;8.13e-12;3!DOID:127;8.13e-12;3!DOID:0060072;4.42e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.11e-12,3;DOID:127,7.11e-12,3;DOID:0060072,3.99e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001911!6.24e-13!4;UBERON:0005333!6.24e-13!4;UBERON:0008425!6.24e-13!4;UBERON:0005311!6.24e-13!4;UBERON:0006947!8.28e-11!3;UBERON:0004054!8.28e-11!3;UBERON:0005904!3.46e-08!4;UBERON:0001003!7.57e-08!14;UBERON:0007376!7.57e-08!14;UBERON:0007383!7.57e-08!14;UBERON:0002419!7.62e-08!2;UBERON:0007771!7.62e-08!2;UBERON:0003297!7.62e-08!2;UBERON:0001821!7.62e-08!2;UBERON:0003487!7.62e-08!2;UBERON:0001820!7.62e-08!2;UBERON:0005089!7.62e-08!2;UBERON:0005088!7.62e-08!2;UBERON:0003101!8.08e-08!22;UBERON:0000079!8.08e-08!22;UBERON:0003343!1.21e-07!4;UBERON:0004785!1.21e-07!4;UBERON:0006554!3.08e-07!44;UBERON:0003135!4.53e-07!11;UBERON:0001008!5.06e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;8.39e-25;3!UBERON:0004054;8.39e-25;3!UBERON:0005904;9.15e-19;4!UBERON:0001003;1.17e-18;15!UBERON:0007376;1.17e-18;15!UBERON:0002419;1.37e-17;2!UBERON:0007771;1.37e-17;2!UBERON:0003297;1.37e-17;2!UBERON:0001821;1.37e-17;2!UBERON:0003487;1.37e-17;2!UBERON:0001820;1.37e-17;2!UBERON:0002110;1.19e-11;3!UBERON:0000998;1.43e-09;1!UBERON:0001301;1.43e-09;1!UBERON:0006868;1.43e-09;1!UBERON:0004175;1.69e-09;21!UBERON:0001911;3.00e-09;4!UBERON:0007029;3.67e-09;1!UBERON:0001000;3.67e-09;1!UBERON:0005352;3.67e-09;1!UBERON:0010371;1.41e-08;31!UBERON:0000058;8.05e-08;10!UBERON:0003135;3.77e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,4.21e-25,3;UBERON:0004054,4.21e-25,3;UBERON:0005904,5.47e-19,4;UBERON:0001003,1.24e-18,15;UBERON:0007376,1.24e-18,15;UBERON:0007383,1.24e-18,15;UBERON:0002419,1.49e-17,2;UBERON:0007771,1.49e-17,2;UBERON:0003297,1.49e-17,2;UBERON:0001821,1.49e-17,2;UBERON:0003487,1.49e-17,2;UBERON:0001820,1.49e-17,2;UBERON:0005089,1.49e-17,2;UBERON:0005088,1.49e-17,2;UBERON:0002110,1.59e-11,3;UBERON:0006242,1.59e-11,3;UBERON:0000998,1.21e-09,1;UBERON:0006868,1.21e-09,1;UBERON:0001301,1.32e-09,1;UBERON:0001000,2.35e-09,1;UBERON:0005352,2.35e-09,1;UBERON:0007029,2.55e-09,1;UBERON:0001911,2.89e-09,4;UBERON:0005333,2.89e-09,4;UBERON:0008425,2.89e-09,4;UBERON:0005311,2.89e-09,4;UBERON:0004175,5.10e-08,25;UBERON:0003135,3.15e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57364156242108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42675371031213,1.1240175325762,1.20634766893957,0,0,0,0,0,0,0.288732895522148,0,1.52203321787679,0,0,0,0,0,0,0,0,5.28395283946805,3.48760726216754,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,1.28913384510255,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44559322797703,5.20048196829217,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68471475667626,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.988551862620595,0,0,0.493217028184668,0,0,0,0,0,0,0.0874599999961957,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,1.97292201424695,0,0,0,0,0,0.664653872707185,0,0,0,0,0,0,0.293977192243133,0,3.4945333648406,0,0,0,0,1.06687918137261,0,0,0,0,0.189932387867636,1.17330829640882,0,3.41524791582964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0952078182318,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,2.17199840701485,0,3.91904832131291,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983091635014877,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0.825788063434183,0.733714394086716,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.175871244359621,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,3.81048345171836,0,0,0,0,0,20.360293472039,0,0,0,1.94284397223656,0,0,0,0,0,0,0.0771741581079447,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0.357107877211315,0,0,5.11235471772562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:18415665..18415682,+ | |||
}} |
Latest revision as of 07:20, 24 July 2015
Short description: | p@chr12:18415665..18415682, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:18415665..18415682, + |
Coexpression cluster: | C133_signet_gall_small_kidney_colon_ductal_adenocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epidermal cell | 5.84e-22 | 9 |
sebum secreting cell | 1.49e-17 | 2 |
epithelial cell of sweat gland | 1.49e-17 | 2 |
epithelial cell of skin gland | 1.49e-17 | 2 |
acinar cell of sebaceous gland | 1.49e-17 | 2 |
keratinocyte | 1.53e-14 | 5 |
general ecto-epithelial cell | 4.37e-14 | 14 |
stratified squamous epithelial cell | 3.25e-12 | 6 |
keratin accumulating cell | 3.25e-12 | 6 |
stratified epithelial cell | 3.25e-12 | 6 |
keratinizing barrier epithelial cell | 3.25e-12 | 6 |
epithelial fate stem cell | 3.25e-12 | 6 |
stratified epithelial stem cell | 3.25e-12 | 6 |
surface ectodermal cell | 3.25e-12 | 6 |
mammary gland epithelial cell | 2.89e-09 | 4 |
acinar cell | 1.50e-07 | 5 |
squamous epithelial cell | 5.38e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 4.21e-25 | 3 |
internal male genitalia | 4.21e-25 | 3 |
duct of male reproductive system | 5.47e-19 | 4 |
skin epidermis | 1.24e-18 | 15 |
outer epithelium | 1.24e-18 | 15 |
enveloping layer of ectoderm | 1.24e-18 | 15 |
skin gland | 1.49e-17 | 2 |
epidermis gland | 1.49e-17 | 2 |
gland of integumental system | 1.49e-17 | 2 |
sebaceous gland | 1.49e-17 | 2 |
skin sebaceous gland | 1.49e-17 | 2 |
sweat gland | 1.49e-17 | 2 |
sweat gland placode | 1.49e-17 | 2 |
sebaceous gland placode | 1.49e-17 | 2 |
gallbladder | 1.59e-11 | 3 |
gall bladder primordium | 1.59e-11 | 3 |
seminal vesicle | 1.21e-09 | 1 |
seminal fluid secreting gland | 1.21e-09 | 1 |
epididymis | 1.32e-09 | 1 |
vas deferens | 2.35e-09 | 1 |
spermatic cord | 2.35e-09 | 1 |
surface | 2.55e-09 | 1 |
mammary gland | 2.89e-09 | 4 |
mammary bud | 2.89e-09 | 4 |
mammary ridge | 2.89e-09 | 4 |
mammary placode | 2.89e-09 | 4 |
internal genitalia | 5.10e-08 | 25 |
male reproductive organ | 3.15e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.11e-12 | 3 |
leiomyoma | 7.11e-12 | 3 |
benign neoplasm | 3.99e-09 | 4 |