FFCP PHASE1:Hg19::chr11:17033917..17033931,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr11:17033917..17033931,- | |||
|description=CAGE_peak_at_chr11:17033917..17033931,- | |||
|id=chr11:17033917..17033931,- | |||
|ontology_enrichment_celltype=CL:0002322!6.34e-16!5;CL:0000039!1.82e-07!7;CL:0000586!1.82e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.90e-20;7!CL:0000586;1.90e-20;7!CL:0002322;2.85e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.17e-20,7;CL:0000586,2.17e-20,7;CL:0002322,2.52e-13,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.61e-14;10!UBERON:0005564;1.61e-14;10!UBERON:0010122;6.42e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;6.61e-07;22!DOID:2994;6.61e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,6.89e-07,22;DOID:2994,6.89e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003075!3.09e-17!86;UBERON:0007284!3.09e-17!86;UBERON:0005743!7.45e-17!86;UBERON:0002346!3.63e-16!90;UBERON:0000073!5.85e-16!94;UBERON:0001016!5.85e-16!94;UBERON:0001017!2.21e-13!82;UBERON:0002298!3.58e-12!8;UBERON:0001049!9.74e-12!57;UBERON:0005068!9.74e-12!57;UBERON:0006241!9.74e-12!57;UBERON:0007135!9.74e-12!57;UBERON:0007023!4.56e-11!115;UBERON:0003056!5.25e-11!61;UBERON:0000966!4.81e-10!5;UBERON:0005388!4.81e-10!5;UBERON:0001802!4.81e-10!5;UBERON:0004121!1.02e-09!169;UBERON:0001896!2.35e-09!3;UBERON:0005290!2.35e-09!3;UBERON:0010096!2.35e-09!3;UBERON:0000924!2.55e-09!173;UBERON:0006601!2.55e-09!173;UBERON:0000955!8.89e-09!69;UBERON:0006238!8.89e-09!69;UBERON:0002616!1.50e-08!59;UBERON:0000153!2.48e-08!129;UBERON:0007811!2.48e-08!129;UBERON:0003076!2.60e-08!15;UBERON:0003057!2.60e-08!15;UBERON:0000033!3.73e-08!123;UBERON:0002308!6.84e-08!9;UBERON:0000125!6.84e-08!9;UBERON:0001905!1.81e-07!2;UBERON:0002757!1.81e-07!2;UBERON:0010134!1.81e-07!2;UBERON:0002784!1.81e-07!2;UBERON:0005408!1.81e-07!2;UBERON:0001899!1.81e-07!2;UBERON:0001894!2.30e-07!7;UBERON:0006222!2.30e-07!7;UBERON:0009663!6.05e-07!7;UBERON:0000019!9.32e-07!19;UBERON:0000047!9.32e-07!19;UBERON:0004088!9.32e-07!19;UBERON:0003072!9.32e-07!19;UBERON:0003071!9.32e-07!19;UBERON:0004128!9.32e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.46e-31;2!UBERON:0002757;3.46e-31;2!UBERON:0010134;3.46e-31;2!UBERON:0005408;3.46e-31;2!UBERON:0001899;3.46e-31;2!UBERON:0000473;5.57e-18;8!UBERON:0003296;3.87e-16;4!UBERON:0010133;3.87e-16;4!UBERON:0002784;3.87e-16;4!UBERON:0003135;2.95e-13;11!UBERON:0001894;1.24e-09;7!UBERON:0001873;6.42e-09;2!UBERON:0000991;3.28e-07;21!UBERON:0003101;6.61e-07;22!UBERON:0000079;6.61e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.41e-31,2;UBERON:0002757,6.41e-31,2;UBERON:0010134,6.41e-31,2;UBERON:0005408,6.41e-31,2;UBERON:0001899,6.41e-31,2;UBERON:0000473,6.26e-18,8;UBERON:0003296,5.26e-16,4;UBERON:0010133,5.26e-16,4;UBERON:0002784,5.26e-16,4;UBERON:0003135,3.21e-13,11;UBERON:0001894,1.47e-09,7;UBERON:0006222,1.47e-09,7;UBERON:0001873,5.08e-09,2;UBERON:0010122,5.08e-09,2;UBERON:0000991,3.42e-07,21;UBERON:0009196,3.42e-07,21;UBERON:0009117,3.42e-07,21;UBERON:0005564,3.42e-07,21;UBERON:0004176,6.89e-07,22;UBERON:0003101,6.89e-07,22;UBERON:0000079,6.89e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0.665188192387692,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92736894711029,0.795178609928912,0.464775771478074,0.518305275076852,1.7662459561294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409074730008619,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0.063186579628488,0.450970258243478,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0.795229689809303,0,0.160753148465019,0.137539436597234,0,0,0,0,0,1.89133697518076,0.577000469484979,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,1.72022758707021,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,1.07140367175657,1.68141861109412,0,0,0,0,0,0.0679697329768317,0,0,0.111231401892069,0,0,0,0,0,0,3.64530375300947,0.158013611732727,1.16241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0.219881033490858,0,0.0771741581079447,0,0.470317296361523,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0.252332849670158,0.109265571963696,0,1.22386595690378,2.93939145792117,2.57305718697566,0.250707539292375,0,0,0,0.517164979309476,0.213233981900981,0,0,0,0,0,0,0,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr11:17033917..17033931,- | |||
}} |
Latest revision as of 20:25, 23 July 2015
Short description: | p@chr11:17033917..17033931, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:17033917..17033931, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.17e-20 | 7 |
germ cell | 2.17e-20 | 7 |
embryonic stem cell | 2.52e-13 | 5 |
Ontology term | p-value | n |
---|---|---|
pineal body | 6.41e-31 | 2 |
regional part of epithalamus | 6.41e-31 | 2 |
secretory circumventricular organ | 6.41e-31 | 2 |
circumventricular organ | 6.41e-31 | 2 |
epithalamus | 6.41e-31 | 2 |
testis | 6.26e-18 | 8 |
gland of diencephalon | 5.26e-16 | 4 |
neuroendocrine gland | 5.26e-16 | 4 |
regional part of diencephalon | 5.26e-16 | 4 |
male reproductive organ | 3.21e-13 | 11 |
diencephalon | 1.47e-09 | 7 |
future diencephalon | 1.47e-09 | 7 |
caudate nucleus | 5.08e-09 | 2 |
future caudate nucleus | 5.08e-09 | 2 |
gonad | 3.42e-07 | 21 |
indifferent external genitalia | 3.42e-07 | 21 |
indifferent gonad | 3.42e-07 | 21 |
gonad primordium | 3.42e-07 | 21 |
external genitalia | 6.89e-07 | 22 |
male organism | 6.89e-07 | 22 |
male reproductive system | 6.89e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.89e-07 | 22 |
germ cell cancer | 6.89e-07 | 22 |