FFCP PHASE1:Hg19::chr10:95242083..95242098,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26509 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3656 | |||
|TSSclassifier=strong | |||
|UniProt=F8W8J4,C9JCN0,Q9NZM1 | |||
|association_with_transcript=-9bp_to_ENST00000371489,ENST00000371501,ENST00000371502,NM_013451,NM_133337,uc001kin.2,uc001kio.2,uc001kip.3,uc009xuf.2_5end | |||
|cluster_id=chr10:95242083..95242098,- | |||
|coexpression_cluster_id=C2080 | |||
|description=CAGE_peak_2_at_MYOF_5end | |||
|id=chr10:95242083..95242098,- | |||
|ontology_enrichment_celltype=CL:0000055!1.67e-24!180;CL:0000057!9.05e-17!75;CL:0000220!1.56e-15!246;CL:0002321!6.89e-15!248;CL:0000548!2.88e-14!679;CL:0000004!2.88e-14!679;CL:0000255!2.88e-14!679;CL:0000012!2.67e-13!682;CL:0000066!1.16e-12!254;CL:0000222!1.84e-12!119;CL:0002620!1.43e-11!23;CL:0000076!3.28e-09!62;CL:0000680!5.69e-09!57;CL:0000056!5.69e-09!57;CL:0000355!5.69e-09!57;CL:0000187!3.90e-08!54;CL:0000183!1.03e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.81e-12;23!CL:0000057;9.86e-08;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.11e-18,76;CL:0002321,9.87e-16,250;CL:0000066,3.72e-13,253;CL:0000222,4.89e-13,121;CL:0002620,9.28e-12,23;CL:0000076,7.65e-10,63;CL:0000680,2.86e-09,58;CL:0000056,2.86e-09,58;CL:0000355,2.86e-09,58;CL:0000187,2.04e-08,55;CL:0000192,8.47e-07,43;CL:0000514,8.47e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!9.65e-19!216;UBERON:0003102!5.50e-15!95;UBERON:0000475!1.65e-14!365;UBERON:0000914!5.92e-14!83;UBERON:0002329!5.92e-14!83;UBERON:0003077!5.92e-14!83;UBERON:0003059!5.92e-14!83;UBERON:0007282!5.92e-14!83;UBERON:0009618!5.92e-14!83;UBERON:0007285!5.92e-14!83;UBERON:0003104!7.94e-14!238;UBERON:0009142!7.94e-14!238;UBERON:0000468!1.47e-12!659;UBERON:0005256!1.67e-12!143;UBERON:0000486!1.40e-11!82;UBERON:0004290!6.42e-11!70;UBERON:0000467!2.15e-10!625;UBERON:0002097!2.38e-10!40;UBERON:0000480!3.96e-10!626;UBERON:0000926!4.74e-10!448;UBERON:0004120!4.74e-10!448;UBERON:0006603!4.74e-10!448;UBERON:0002199!1.09e-09!45;UBERON:0002416!1.09e-09!45;UBERON:0000481!2.96e-09!347;UBERON:0000490!1.82e-08!138;UBERON:0001134!3.43e-08!61;UBERON:0002036!3.43e-08!61;UBERON:0003082!3.43e-08!61;UBERON:0002385!6.38e-08!63;UBERON:0001015!6.38e-08!63;UBERON:0000383!6.38e-08!63;UBERON:0002049!1.13e-07!79;UBERON:0007798!1.13e-07!79;UBERON:0004923!3.68e-07!57;UBERON:0004119!5.50e-07!169;UBERON:0000925!5.50e-07!169;UBERON:0006595!5.50e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.62e-08;41!UBERON:0004923;6.59e-08;55!UBERON:0002199;2.29e-07;46!UBERON:0002416;2.29e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,6.75e-16,199;UBERON:0003102,4.78e-15,99;UBERON:0000486,7.63e-12,83;UBERON:0000490,3.05e-11,148;UBERON:0002329,4.22e-11,71;UBERON:0003059,4.22e-11,71;UBERON:0007282,4.22e-11,71;UBERON:0004290,4.22e-11,71;UBERON:0009618,4.22e-11,71;UBERON:0003104,5.09e-11,160;UBERON:0009142,5.09e-11,160;UBERON:0007524,5.23e-11,73;UBERON:0002097,8.33e-11,41;UBERON:0007503,1.31e-10,78;UBERON:0003077,1.49e-10,72;UBERON:0007285,1.49e-10,72;UBERON:0002199,3.98e-10,46;UBERON:0002416,3.98e-10,46;UBERON:0005256,1.13e-09,122;UBERON:0004923,2.37e-09,66;UBERON:0001134,2.48e-08,62;UBERON:0002036,2.48e-08,62;UBERON:0003082,2.48e-08,62;UBERON:0002385,4.64e-08,64;UBERON:0001015,4.64e-08,64;UBERON:0000383,4.64e-08,64;UBERON:0002049,2.08e-07,78;UBERON:0007798,2.08e-07,78 | |||
|phase1_expression=29.4318974418302,20.3395497696434,42.5682300369833,22.0161256376887,31.7342377043374,31.4041868676133,5.06599756336621,13.8978372153903,4.44015567939725,1.72013755551056,7.6758128476967,7.8638893966862,9.75937819445278,25.1245696508895,49.7096063591874,10.7572023432284,9.64311244838363,8.76372108464848,14.1500511649247,8.61847406537515,22.2360753456236,3.76145665773705,7.44213566540748,16.9724287090376,19.8357370559788,0,0,0,0.393364276848904,0.383829398097213,0.928896739896456,15.6301608161418,26.2049149337078,28.4710587828427,0,0,0,1.10799081706375,0.802177789880567,0.217010870715852,0,0,0,0.436194716338694,1.13362783106643,0.242584061187816,1.85943229524548,2.05583944010913,2.47765096716083,4.60307827715441,8.96562472851852,2.60130452877444,2.06847408441971,1.93645405075148,1.35426486594342,0.564727018627814,0.545812300115692,1.12361742222542,3.97909060082173,2.56743221660875,1.91801137739712,4.94776950280074,9.17532825059507,2.98357325372886,1.45104619314292,2.26954089876456,0.622822248995575,4.52247597462138,4.69334626578181,2.38907729175628,1.21079900526674,1.47311054395026,0.949387162322653,0.633765858935825,1.27562579979026,0.209658645508376,0.22465726229299,0.300353785683013,0.16072558669708,1.42506371870624,0.79566670879636,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0,1.30059347559878,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,1.24930726552346,0,0,0,0,0,17.0664806419773,2.01210257911091,5.24236503558474,40.842624219456,34.0909779232405,21.2924382872411,15.1104329939709,15.0856809793817,25.051726548478,26.1640689005825,25.0329139225409,2.35762335895883,6.19301990097322,7.04490441290416,6.81549526674835,7.31344896656922,5.45127638127347,0,0,0.371457501329565,13.3170812935692,24.9468032580776,9.71993404501264,26.0041653285044,17.618976320816,14.5812562228236,14.6296476575767,22.4822580477316,34.5093274806109,17.0707512509982,13.696196781711,12.9246257972147,6.10155143870424,14.7065232138347,7.29127753093584,23.3965288104289,20.8812316542338,20.1574550065147,13.7984973719295,10.4419222552494,12.4577185872677,0,0,10.9023513035634,91.4428391119386,23.9331667046056,57.7304028345634,46.4675325613078,16.6694139633228,20.7450712052654,8.5399196583764,15.5400555502811,12.4484414159907,15.2223059438748,15.5288807957786,9.23280308634082,20.74233328128,9.60717870518566,29.0308871452198,19.3960419325113,26.6018651382206,39.9277295388801,43.2200761462911,33.0059395750284,56.5507054376054,24.5668634623536,44.7400632491064,41.5801000048719,43.0244456944689,2.73048408581408,6.46756327634615,27.943794916375,29.6530892096555,55.4128230968366,48.726515917773,61.604046955603,53.7852250885617,12.2506757812823,97.408572179052,34.1691822109708,40.4789931214763,72.0218630602565,48.125531154351,144.536342965598,65.8853671413828,52.3206629947925,54.46728588511,121.925512959907,50.8115440505492,22.7920940114525,173.599690740624,67.9069142054295,42.0510268930009,26.4767368833717,27.8201043002651,40.1526433544605,0.487894824518382,0,0.929551542956147,1.55491582523056,0.504641701751257,0.36497735907583,64.1443082552245,82.3348400886893,20.7202382028721,25.0758681137269,30.3189382301226,16.7995656056578,12.3066823757014,13.978639733242,15.5514501552675,14.8158021982836,13.0498840511103,12.269649042575,13.9317240238996,10.7729203944989,9.59602091012043,5.60967095213783,6.173610169971,7.3504355692771,0,0,0,0,7.62528318967304,21.2744084770172,29.6325770603289,8.99214026060957,11.6613607997492,21.7582846122545,8.47101593806844,2.07986957055916,14.4331342025273,9.73815401790645,25.7125040376449,10.2500177910362,3.70388410061289,8.37118269832232,16.5942923571448,12.0188062693282,1.96973604869918,8.65815781015179,4.60756603095058,11.2480600784132,14.6144451533008,14.0357346269963,15.8518585184041,11.6253575405585,12.2682457332868,0,0,0,0.288239906833923,0.12624243342638,3.30189050319279,16.8074907245642,2.34434894420094,17.1072446022705,13.5732290368387,8.40960561962969,2.85826432630578,14.2406477118608,17.0024426844979,21.8548091746431,31.2837552133822,10.7296933755565,14.370146793452,48.9326134516162,52.003718455683,4.11531798819427,17.0218958427934,13.321108950805,9.0076136004633,2.17048642156577,7.40916303102692,22.150060531974,9.24019066730619,5.543663110534,29.842498328899,17.4306691720059,10.9970290300263,0,1.50677127429638,2.10833939483032,63.9798364162526,55.1337292003747,37.0855953105868,28.9562613335158,43.7664567032317,22.5616813682268,0,0,0,0,1.77866236955724,0,0,0.335032530668698,3.82763250991898,0,0,0,23.0660004431983,22.0075029266258,33.6368629387672,139.13250636411,109.555399121457,107.710749468177,98.5159300088718,36.7154241667817,6.82222512167955,5.17365356462525,19.2625423575277,18.9900243597954,63.5988057906366,4.89502893656851,6.86286847621712,0,0,0.106727557803444,6.36567900037145,6.65741758041988,10.2812699732091,43.6669741761047,91.9237219995494,44.9056151092918,47.0270677768423,52.7058466538705,32.4924920710087,13.3576259800492,14.4957112174496,14.20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| |||
|short_description=p2@MYOF | |||
}} |
Latest revision as of 01:28, 20 September 2015
Short description: | p2@MYOF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MYOF_5end |
Coexpression cluster: | C2080_mucinous_Fibroblast_epithelioid_Preadipocyte_Olfactory_prostate_acantholytic |
Association with transcript: | -9bp_to_ENST00000371489, ENST00000371501, ENST00000371502, NM_013451, NM_133337, uc001kin.2, uc001kio.2, uc001kip.3, uc009xuf.2_5end |
EntrezGene: | MYOF |
HGNC: | 3656 |
UniProt: | F8W8J4C9JCN0Q9NZM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.11e-18 | 76 |
embryonic cell | 9.87e-16 | 250 |
epithelial cell | 3.72e-13 | 253 |
mesodermal cell | 4.89e-13 | 121 |
skin fibroblast | 9.28e-12 | 23 |
squamous epithelial cell | 7.65e-10 | 63 |
muscle precursor cell | 2.86e-09 | 58 |
myoblast | 2.86e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.86e-09 | 58 |
muscle cell | 2.04e-08 | 55 |
smooth muscle cell | 8.47e-07 | 43 |
smooth muscle myoblast | 8.47e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 6.75e-16 | 199 |
surface structure | 4.78e-15 | 99 |
multilaminar epithelium | 7.63e-12 | 83 |
unilaminar epithelium | 3.05e-11 | 148 |
somite | 4.22e-11 | 71 |
presomitic mesoderm | 4.22e-11 | 71 |
presumptive segmental plate | 4.22e-11 | 71 |
dermomyotome | 4.22e-11 | 71 |
trunk paraxial mesoderm | 4.22e-11 | 71 |
mesenchyme | 5.09e-11 | 160 |
entire embryonic mesenchyme | 5.09e-11 | 160 |
dense mesenchyme tissue | 5.23e-11 | 73 |
skin of body | 8.33e-11 | 41 |
epithelial vesicle | 1.31e-10 | 78 |
paraxial mesoderm | 1.49e-10 | 72 |
presumptive paraxial mesoderm | 1.49e-10 | 72 |
integument | 3.98e-10 | 46 |
integumental system | 3.98e-10 | 46 |
trunk mesenchyme | 1.13e-09 | 122 |
organ component layer | 2.37e-09 | 66 |
skeletal muscle tissue | 2.48e-08 | 62 |
striated muscle tissue | 2.48e-08 | 62 |
myotome | 2.48e-08 | 62 |
muscle tissue | 4.64e-08 | 64 |
musculature | 4.64e-08 | 64 |
musculature of body | 4.64e-08 | 64 |
vasculature | 2.08e-07 | 78 |
vascular system | 2.08e-07 | 78 |