FFCP PHASE1:Hg19::chr18:56246464..56246503,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=115701 | |EntrezGene=115701 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=20565 | |HGNC=20565 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q86TB3 | |UniProt=Q86TB3 | ||
|association_with_transcript=63bp_to_AL832018_5end | |association_with_transcript=63bp_to_AL832018_5end | ||
|cluster_id=chr18:56246464..56246503,- | |||
|coexpression_cluster_id=C1324 | |coexpression_cluster_id=C1324 | ||
|description=CAGE_peak_3_at_ALPK2_5end | |description=CAGE_peak_3_at_ALPK2_5end |
Latest revision as of 00:04, 20 September 2015
Short description: | p3@ALPK2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ALPK2_5end |
Coexpression cluster: | C1324_Fibroblast_Preadipocyte_basal_migratory_mesenchymal_Smooth_spindle |
Association with transcript: | 63bp_to_AL832018_5end |
EntrezGene: | ALPK2 |
HGNC: | 20565 |
UniProt: | Q86TB3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@ALPK2 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.08e-18 | 76 |
skin fibroblast | 8.52e-14 | 23 |
multi fate stem cell | 2.40e-13 | 427 |
somatic stem cell | 1.12e-12 | 433 |
motile cell | 2.73e-12 | 386 |
mesenchymal cell | 3.52e-12 | 354 |
stem cell | 8.02e-12 | 441 |
connective tissue cell | 2.25e-11 | 361 |
extraembryonic cell | 3.36e-11 | 19 |
preadipocyte | 1.04e-10 | 12 |
Showing 1 to 10 of 10 entries
Ontology term | p-value | n |
---|---|---|
connective tissue | 7.47e-13 | 371 |
integument | 2.26e-10 | 46 |
integumental system | 2.26e-10 | 46 |
extraembryonic membrane | 2.44e-10 | 14 |
membranous layer | 2.44e-10 | 14 |
skin of body | 2.77e-09 | 41 |
extraembryonic structure | 6.23e-08 | 24 |
somatic layer of lateral plate mesoderm | 7.52e-07 | 8 |
omentum | 8.97e-07 | 6 |
peritoneum | 8.97e-07 | 6 |
Showing 1 to 10 of 12 entries
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.64e-08 | 5 |
myotonic disease | 9.64e-08 | 5 |
muscle tissue disease | 9.64e-08 | 5 |
myopathy | 9.64e-08 | 5 |
muscular disease | 9.64e-08 | 5 |
myotonic dystrophy | 9.64e-08 | 5 |
ovarian cancer | 3.28e-07 | 14 |
Showing 1 to 7 of 7 entries