FFCP PHASE1:Hg19::chr6:44191290..44191341,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:44191290..44191341,+
|short_description=p1@SLC29A1
|description=CAGE_peak_1_at_SLC29A1_5end
|association_with_transcript=0bp_to_ENST00000371740,ENST0000037...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2030 | |EntrezGene=2030 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11003 | |HGNC=11003 | ||
|TSSclassifier=strong | |||
|UniProt=Q99808 | |UniProt=Q99808 | ||
|association_with_transcript=0bp_to_ENST00000371740,ENST00000371755,NM_001078175,NM_001078176,uc003owx.1,uc003owy.1,uc011dvq.1_5end | |||
|cluster_id=chr6:44191290..44191341,+ | |||
|description=CAGE_peak_1_at_SLC29A1_5end | |||
|id=chr6:44191290..44191341,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.31e-15!254;CL:0002139!2.42e-11!24;CL:0000115!1.90e-10!35;CL:0000071!4.41e-10!18;CL:0002546!4.41e-10!18;CL:0002078!1.52e-08!44;CL:0002321!5.53e-08!248;CL:0000220!1.79e-07!246;CL:1000413!5.77e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.57e-11;24!CL:0000071;4.46e-10;18!CL:0000115;1.27e-09;36!CL:1000413;5.73e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.22e-15,253;CL:0002139,2.38e-11,24;CL:0000115,6.23e-11,36;CL:0000071,4.35e-10,18;CL:0002546,4.35e-10,18;CL:0002078,5.61e-09,45;CL:0002321,5.54e-08,250;CL:1000413,5.72e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;4.46e-10;18 | |||
|ontology_enrichment_disease=DOID:162!1.45e-21!235;DOID:14566!1.05e-20!239;DOID:2531!1.88e-19!51;DOID:0060083!1.88e-19!51;DOID:1240!5.09e-16!39;DOID:8692!2.40e-12!31;DOID:0050686!8.45e-12!137;DOID:0050687!7.79e-10!143;DOID:305!6.73e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.84e-13;39!DOID:8692;4.34e-12;31!DOID:2531;6.30e-12;51!DOID:0060083;6.30e-12;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.50e-21,235;DOID:14566,1.09e-20,239;DOID:2531,1.83e-19,51;DOID:0060083,1.83e-19,51;DOID:1240,4.98e-16,39;DOID:8692,2.36e-12,31;DOID:0050686,8.33e-12,137;DOID:0050687,8.08e-10,143;DOID:305,6.68e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001986!4.41e-10!18;UBERON:0004638!4.41e-10!18;UBERON:0004852!4.41e-10!18;UBERON:0000487!1.94e-09!22;UBERON:0003914!3.05e-08!118;UBERON:0006914!8.26e-08!25;UBERON:0000055!1.29e-07!69;UBERON:0003915!5.77e-07!9;UBERON:0004700!5.77e-07!9;UBERON:0001917!5.77e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.46e-10;18!UBERON:0001986;4.46e-10;18!UBERON:0004852;4.46e-10;18!UBERON:0000487;2.02e-09;22!UBERON:0000490;6.45e-08;33!UBERON:0006914;9.72e-08;25!UBERON:0003915;5.73e-07;9!UBERON:0004700;5.73e-07;9!UBERON:0001917;5.73e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,4.35e-10,18;UBERON:0001986,4.35e-10,18;UBERON:0004852,4.35e-10,18;UBERON:0000487,1.92e-09,22;UBERON:0003914,1.62e-08,117;UBERON:0000055,4.75e-08,68;UBERON:0006914,8.19e-08,25;UBERON:0003915,5.72e-07,9;UBERON:0004700,5.72e-07,9;UBERON:0001917,5.72e-07,9;UBERON:0007500,6.00e-07,59;UBERON:0001981,6.00e-07,59;UBERON:0004537,6.00e-07,59;UBERON:0006965,6.00e-07,59 | |||
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| ||
|short_description=p1@SLC29A1 | |||
}} | }} |
Latest revision as of 23:43, 18 September 2015
Short description: | p1@SLC29A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC29A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371740, ENST00000371755, NM_001078175, NM_001078176, uc003owx.1, uc003owy.1, uc011dvq.1_5end |
EntrezGene: | SLC29A1 |
HGNC: | 11003 |
UniProt: | Q99808 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.22e-15 | 253 |
endothelial cell of vascular tree | 2.38e-11 | 24 |
endothelial cell | 6.23e-11 | 36 |
blood vessel endothelial cell | 4.35e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.35e-10 | 18 |
meso-epithelial cell | 5.61e-09 | 45 |
embryonic cell | 5.54e-08 | 250 |
endothelial cell of artery | 5.72e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 4.35e-10 | 18 |
endothelium | 4.35e-10 | 18 |
cardiovascular system endothelium | 4.35e-10 | 18 |
simple squamous epithelium | 1.92e-09 | 22 |
epithelial tube | 1.62e-08 | 117 |
vessel | 4.75e-08 | 68 |
squamous epithelium | 8.19e-08 | 25 |
endothelial tube | 5.72e-07 | 9 |
arterial system endothelium | 5.72e-07 | 9 |
endothelium of artery | 5.72e-07 | 9 |
epithelial tube open at both ends | 6.00e-07 | 59 |
blood vessel | 6.00e-07 | 59 |
blood vasculature | 6.00e-07 | 59 |
vascular cord | 6.00e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.50e-21 | 235 |
disease of cellular proliferation | 1.09e-20 | 239 |
hematologic cancer | 1.83e-19 | 51 |
immune system cancer | 1.83e-19 | 51 |
leukemia | 4.98e-16 | 39 |
myeloid leukemia | 2.36e-12 | 31 |
organ system cancer | 8.33e-12 | 137 |
cell type cancer | 8.08e-10 | 143 |
carcinoma | 6.68e-07 | 106 |