FFCP PHASE1:Hg19::chr6:25279651..25279727,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:25279651..25279727,+
|short_description=p2@LRRC16A
|description=CAGE_peak_2_at_LRRC16A_5end
|association_with_transcript=0bp_to_ENST00000329474,ENST0000039...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55604 | |EntrezGene=55604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21581 | |HGNC=21581 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VZK9 | |UniProt=Q5VZK9 | ||
|association_with_transcript=0bp_to_ENST00000329474,ENST00000399313,NM_001173977,NM_017640_5end | |||
|cluster_id=chr6:25279651..25279727,+ | |||
|description=CAGE_peak_2_at_LRRC16A_5end | |||
|id=chr6:25279651..25279727,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.61e-19!254;CL:0002076!3.80e-10!43;CL:0000223!2.69e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.86e-09;42!CL:0002251;1.20e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.04e-19,253;CL:0002076,9.38e-12,42;CL:0000223,3.34e-08,58;CL:0002251,7.26e-08,20 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.92e-09;29!UBERON:0006595;1.88e-07;86 | |||
|ontology_enrichment_disease=DOID:305!6.13e-23!106;DOID:0050687!4.65e-16!143;DOID:299!2.94e-09!25;DOID:162!7.98e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:299;2.28e-09;25!DOID:305;3.05e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.39e-21,106;DOID:0050687,3.90e-15,143;DOID:299,1.78e-09,25;DOID:162,2.23e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.98e-18!169;UBERON:0000925!5.98e-18!169;UBERON:0006595!5.98e-18!169;UBERON:0001007!4.43e-15!155;UBERON:0001555!4.43e-15!155;UBERON:0007026!4.43e-15!155;UBERON:0004921!1.25e-14!129;UBERON:0004185!1.25e-14!129;UBERON:0001004!3.31e-12!72;UBERON:0000077!4.99e-12!130;UBERON:0000064!1.23e-10!219;UBERON:0000065!5.47e-10!53;UBERON:0008947!1.63e-08!38;UBERON:0003258!1.63e-08!38;UBERON:0000464!1.82e-08!104;UBERON:0007023!2.13e-08!115;UBERON:0001041!3.33e-08!98;UBERON:0005911!6.15e-08!82;UBERON:0000466!8.38e-08!126;UBERON:0005156!1.29e-07!59;UBERON:0000990!1.29e-07!59;UBERON:0005153!1.83e-07!37;UBERON:0000072!2.60e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.65e-09;33!UBERON:0005409;8.79e-08;22!UBERON:0000065;2.49e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.99e-20,160;UBERON:0000925,9.99e-20,160;UBERON:0006595,9.99e-20,160;UBERON:0004921,6.56e-18,118;UBERON:0001007,3.98e-17,145;UBERON:0001555,3.98e-17,145;UBERON:0007026,3.98e-17,145;UBERON:0001004,4.84e-12,74;UBERON:0011216,3.68e-11,223;UBERON:0001041,7.14e-11,87;UBERON:0000065,5.98e-10,54;UBERON:0008947,7.11e-09,38;UBERON:0003258,7.11e-09,38;UBERON:0005409,4.60e-08,25;UBERON:0005156,8.44e-08,59;UBERON:0000990,8.44e-08,59;UBERON:0005911,1.58e-07,82;UBERON:0001008,2.23e-07,48;UBERON:0005153,2.50e-07,37;UBERON:0006554,2.76e-07,47;UBERON:0000072,3.77e-07,47;UBERON:0007023,5.74e-07,114 | |||
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| ||
|short_description=p2@LRRC16A | |||
}} | }} |
Latest revision as of 07:39, 17 September 2015
Short description: | p2@LRRC16A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC16A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000329474, ENST00000399313, NM_001173977, NM_017640_5end |
EntrezGene: | LRRC16A |
HGNC: | 21581 |
UniProt: | Q5VZK9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.04e-19 | 253 |
endo-epithelial cell | 9.38e-12 | 42 |
endodermal cell | 3.34e-08 | 58 |
epithelial cell of alimentary canal | 7.26e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.99e-20 | 160 |
endoderm | 9.99e-20 | 160 |
presumptive endoderm | 9.99e-20 | 160 |
subdivision of digestive tract | 6.56e-18 | 118 |
digestive system | 3.98e-17 | 145 |
digestive tract | 3.98e-17 | 145 |
primitive gut | 3.98e-17 | 145 |
respiratory system | 4.84e-12 | 74 |
organ system subdivision | 3.68e-11 | 223 |
foregut | 7.14e-11 | 87 |
respiratory tract | 5.98e-10 | 54 |
respiratory primordium | 7.11e-09 | 38 |
endoderm of foregut | 7.11e-09 | 38 |
gastrointestinal system | 4.60e-08 | 25 |
reproductive structure | 8.44e-08 | 59 |
reproductive system | 8.44e-08 | 59 |
endo-epithelium | 1.58e-07 | 82 |
renal system | 2.23e-07 | 48 |
epithelial bud | 2.50e-07 | 37 |
urinary system structure | 2.76e-07 | 47 |
segment of respiratory tract | 3.77e-07 | 47 |
adult organism | 5.74e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.39e-21 | 106 |
cell type cancer | 3.90e-15 | 143 |
adenocarcinoma | 1.78e-09 | 25 |
cancer | 2.23e-07 | 235 |