FFCP PHASE1:Hg19::chr6:1961197..1961206,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:1961197..1961206,-
|short_description=p15@GMDS
|description=CAGE_peak_15_at_GMDS_5end
|association_with_transcript=-54bp_to_ENST00000530075_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2762 | |EntrezGene=2762 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4369 | |HGNC=4369 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-54bp_to_ENST00000530075_5end | |||
|cluster_id=chr6:1961197..1961206,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_15_at_GMDS_5end | |||
|id=chr6:1961197..1961206,- | |||
|ontology_enrichment_celltype=CL:0002541!5.09e-14!3;CL:0000317!5.32e-10!2;CL:1000448!5.32e-10!2;CL:0002308!5.32e-10!2;CL:0002140!5.32e-10!2;CL:0002537!8.33e-09!5;CL:0000349!5.98e-07!3;CL:0002577!5.98e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.36e-41;19!CL:0002541;4.17e-30;3!CL:0002537;7.23e-19;5!CL:0000317;2.59e-12;2!CL:1000448;2.59e-12;2!CL:0002308;2.59e-12;2!CL:0002536;2.59e-12;2!CL:0002140;2.59e-12;2!CL:0002577;1.21e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.36e-41,19;CL:0002541,5.61e-30,3;CL:0002537,7.24e-19,5;CL:0002536,2.59e-12,2;CL:0000317,3.24e-12,2;CL:1000448,3.24e-12,2;CL:0002308,3.24e-12,2;CL:0002140,3.24e-12,2;CL:0002577,1.04e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006298;3.28e-23;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!4.82e-30!14;UBERON:0000158!4.82e-30!14;UBERON:0003124!3.55e-22!7;UBERON:0000478!1.13e-16!24;UBERON:0000476!5.09e-14!3;UBERON:0000920!5.09e-14!3;UBERON:0004923!8.47e-12!57;UBERON:0000305!1.14e-10!7;UBERON:0001987!2.10e-10!4;UBERON:0004340!2.10e-10!4;UBERON:0002419!5.32e-10!2;UBERON:0007771!5.32e-10!2;UBERON:0003297!5.32e-10!2;UBERON:0001821!5.32e-10!2;UBERON:0003487!5.32e-10!2;UBERON:0001820!5.32e-10!2;UBERON:0005089!5.32e-10!2;UBERON:0005088!5.32e-10!2;UBERON:0004871!2.46e-09!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.08e-55;10!UBERON:0000158;5.08e-55;10!UBERON:0000478;5.53e-33;24!UBERON:0003124;4.17e-30;3!UBERON:0000920;4.17e-30;3!UBERON:0000305;3.84e-29;7!UBERON:0001736;3.28e-23;1!UBERON:0002419;2.59e-12;2!UBERON:0001829;2.59e-12;2!UBERON:0007771;2.59e-12;2!UBERON:0003297;2.59e-12;2!UBERON:0001821;2.59e-12;2!UBERON:0003487;2.59e-12;2!UBERON:0001820;2.59e-12;2!UBERON:0004923;1.66e-07;55!UBERON:0001987;8.61e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.47e-56,14;UBERON:0000158,2.47e-56,14;UBERON:0000478,5.54e-33,24;UBERON:0000920,5.61e-30,3;UBERON:0000305,3.85e-29,7;UBERON:0003124,9.08e-29,7;UBERON:0004871,1.32e-25,8;UBERON:0001736,1.67e-23,1;UBERON:0006298,1.67e-23,1;UBERON:0001829,1.85e-12,2;UBERON:0002419,3.24e-12,2;UBERON:0007771,3.24e-12,2;UBERON:0003297,3.24e-12,2;UBERON:0001821,3.24e-12,2;UBERON:0003487,3.24e-12,2;UBERON:0001820,3.24e-12,2;UBERON:0005089,3.24e-12,2;UBERON:0005088,3.24e-12,2;UBERON:0004923,4.64e-12,66;UBERON:0001987,7.70e-07,4;UBERON:0004340,7.70e-07,4 | |||
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| ||
|short_description=p15@GMDS | |||
}} | }} |
Latest revision as of 02:37, 17 September 2015
Short description: | p15@GMDS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_GMDS_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -54bp_to_ENST00000530075_5end |
EntrezGene: | GMDS |
HGNC: | 4369 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.36e-41 | 19 |
chorionic membrane mesenchymal stem cell | 5.61e-30 | 3 |
amnion mesenchymal stem cell | 7.24e-19 | 5 |
amniotic epithelial cell | 2.59e-12 | 2 |
sebum secreting cell | 3.24e-12 | 2 |
epithelial cell of sweat gland | 3.24e-12 | 2 |
epithelial cell of skin gland | 3.24e-12 | 2 |
acinar cell of sebaceous gland | 3.24e-12 | 2 |
placental epithelial cell | 1.04e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.47e-56 | 14 |
membranous layer | 2.47e-56 | 14 |
extraembryonic structure | 5.54e-33 | 24 |
egg chorion | 5.61e-30 | 3 |
amnion | 3.85e-29 | 7 |
chorion | 9.08e-29 | 7 |
somatic layer of lateral plate mesoderm | 1.32e-25 | 8 |
submandibular gland | 1.67e-23 | 1 |
submandibular gland primordium | 1.67e-23 | 1 |
major salivary gland | 1.85e-12 | 2 |
skin gland | 3.24e-12 | 2 |
epidermis gland | 3.24e-12 | 2 |
gland of integumental system | 3.24e-12 | 2 |
sebaceous gland | 3.24e-12 | 2 |
skin sebaceous gland | 3.24e-12 | 2 |
sweat gland | 3.24e-12 | 2 |
sweat gland placode | 3.24e-12 | 2 |
sebaceous gland placode | 3.24e-12 | 2 |
organ component layer | 4.64e-12 | 66 |
placenta | 7.70e-07 | 4 |
allantois | 7.70e-07 | 4 |