MCL coexpression mm9:3653: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.165598587617144,0.489597927074028,0.719606105202249,0.351658691980711,0.250369204909122,1.00067801337868,1.05031669710722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0542026606006274,0,0,1.03941070977513,0.963083328338296,0.748907441410763,0.941577774994416,0.787201192134773,1.05018269041468,0.645764433320882,1.10010508393667,0,0,0,0.213919140975821,0.244861906851668,0.251772700668622,0,0,0,0,0,0,0,0,0.0243951393312357,0,0,0,0,0,0,0,0,0,0,0.036473692999102,0.060201751373516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107486292845058,0,0.0413718046239649,0,0,0,0,0,0,0,0,0,0,0,0.262070377075954,0.089870634893658,0,0,0,0,0.234338596833454,0,0,0,0.183082358271961,0,0,0,0.100818052764214,0.059344158508384,0.160370146741653,0.354986082243667,0.529265594933374,0.0576701149435126,0,0.0384775301049317,0.114987878451429,0.0966074946791153,0.203849947613232,0.13402895289797,0,0.576305823355977,0,0,0,0,0.924698987751905,0,0,0.965047193452735,0,0,0,0,0,0,0.0232010344389448,0,0,0.0435308600930066,0.34048796375111,0.0798624889873899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0556790680794923,0.0924627465433293,0.0868757024447852,0.0520057338346343,0.137828730493208,0.218541641684707,0.228110118222142,0.211230688008577,0.295435337357176,0.339811349492105,0.319923142514577,0.381750226898425,0.467354557263298,0.447926303382969,0,0,0.837622758779016,1.17822054464428,0,0,0.125047398935554,0.166610423858645,0.242419905655467,0.403767518679164,0.840550178444549,0.558586617945831,0.562698955768539,0.610386248389537,0.593826187158826,0.781310025326407,0.936710885404126,0.951277854363749,0.0251419146063118,0,0,0.026833566425996,0,0.0196259340864308,0,0,0.0422219209538459,0.0168444410470322,0.104982198959467,0,0,0,0,0,0,0.0732089286631787,0.0941187980067036,0.0633619511107467,0,0.091599149879148,0.0393154351023587,0.14084527499094,0.0238867236710338,0.113985437635229,0.584284940124605,0,0,0,0.030519339351902,0.0224197389723651,0.0872826640250236,0.118324019925094,0.196253307224104,0.144918079749151,0.238642105854671,0.461955859754154,0.540686304359933,0.578183287067841,0,0,0.057900067270923,0.122586750288999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394799476958322,0.507775707712249,0.299843917705186,0.418056348044809,0.309918815250463,0,0.0382396321089427,0.176160416268824,0.223119986756056,0.380731937948475,0.269597618619347,0.123991728945758,0.226063053579701,0.263988930277179,0,0.10259530662979,0,0,0,0,0,0,0,0,0.0610343310666611,0,0,0,0,0,0,0,0.720090840257094,0,0,0.0271622003567789,0.0491930916399115,0,0.018547884865738,0.0298244961268902,0,0,0,0.527585253510859,0,0.0761878589197066,0.0802956289379919,0.0549720114763355,0.0810500778291814,0.109183282636941,0.320007075115532,0.443513284177203,0.952799535120574,0,0,0.0580451471511418,0,0.051445604570745,0.0684339372996633,0.124100386773861,0.0993827736896093,0.0177189959645354,0.0795767411444995,0.057063472522347,0.0732839870471347,0.0795063727947373,0,0.0141538966644548,0.0176826707338301,0,0.0787037500278776,0,0.0199414728873146,0,0.0106319114964293,0,0,0,0.0160017698361234,0.914340729660605,0,0,0,0.301950559661898,0.363426429426914,0.163642726833417,0,0.117697460956878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0244314323529403,0,0.104192041947424,0.120876255993453,0,0.0327057221205027,0.0250151168385698,0.0378097465848715,0.0348856448087036,0.0468398688859929,0.056390921288728,0.043192691758359,0.02553579847638,0,0.0198795765065911,0.0426779099732737,0.0236506641178082,0,0.0392912409442346,0.0510059627291379,0.056264781223722,0.0729583017401753,0.0611980703630433,0.0184344791169644,0,0.0162294701681744,0.0396330787825441,0.0993214676313627,0,0.0255354818037453,0,0.0859922256434397,0.0517525693342407,0.122494596748587,0,0.115530296127315|coexpression_dpi_cluster_scores_median=0.120671864823979,0.578845795747055,0.893483712999633,0.400075138318148,0.176350522035494,1.14384834318207,1.1832804111871,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,1.1498155857713,1.04508848908214,0.864306440119346,0.942192449101375,0.9632165831509,1.10658019361123,0.631077476625533,1.18787261600331,0,0,0,0.19802531727213,0.300466757177931,0.259277819461083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620577069359474,0,0,0,0,0,0,0,0,0,0,0,0.198582584603541,0,0,0,0,0,0.297347010565685,0,0,0,0.194062795919081,0,0,0,0.0851089148667383,0,0.177687811491981,0.468513623788752,0.585270807684784,0.0601091194109999,0,0,0.0901223798974778,0.114425913041783,0.231859934088733,0.138933868974914,0,0.590171396413399,0,0,0,0,1.01366236139526,0,0,1.13902390465734,0,0,0,0,0,0,0,0,0,0.0652962901395099,0.346758198498287,0.0509235292940968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719048481885784,0.0922800703916586,0.0780086007519514,0.165185349104694,0.229835835810773,0.186545793286102,0.230600145560333,0.26073884111471,0.448063228020549,0.3455760554733,0.36470102837094,0.404294926983005,0.459225050442381,0,0,0.981858835630106,1.35573775872349,0,0,0.141951942539884,0.147171275172461,0.159794533105191,0.401711503001371,0.883286977870321,0.615874347399584,0.722032942583948,0.746322676061637,0.593780051515429,0.862830928171301,1.02160578188384,1.05520037981201,0,0,0,0,0,0.0294389011296462,0,0,0.0633328814307688,0,0.112756652096095,0,0,0,0,0,0,0.109813392994768,0.0652566657696677,0,0,0.137398724818722,0,0.177582020809476,0,0.170978156452844,0.654206451620456,0,0,0,0,0,0.0927359537809747,0.0774164737207147,0.168174863922987,0.159245076116426,0.254614253830089,0.447545072974433,0.61366528635527,0.703306310736484,0,0,0,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3837078292652,0.60499405997329,0.172795775280084,0.423196907296558,0.36688061805648,0,0,0.194740515512231,0.275519968215989,0.404350550054662,0.360241417805924,0.134665885471472,0.233756033654604,0.289613536706145,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0.834396332438691,0,0,0,0.0737896374598673,0,0,0,0,0,0,0.463794662544282,0,0.0803809427109337,0.0849373898696927,0.0824580172145032,0.0857765460992942,0.103710933695783,0.365947362366015,0.41002363166848,0.974280126906661,0,0,0.0605152268483434,0,0.0771684068561175,0.0527554171614426,0.126427630498926,0.130999727855463,0,0.0433069931089932,0,0.109925980570702,0.119259559192106,0,0,0,0,0.0787037500278776,0,0,0,0,0,0,0,0,0.9511219418802,0,0,0,0.334280313231288,0.287446174218998,0.135547100918658,0,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.081359932135904,0.120876255993453,0,0,0,0.0388749848471105,0.0523284672130554,0.0472245945615809,0,0,0,0,0,0,0,0,0.0589368614163519,0.0390607415003592,0.0352754493378881,0.0729583017401753,0,0,0,0,0.0408018333703219,0.148982201447044,0,0,0,0.091291089277545,0,0.0760168881589905,0,0.0905641158318875|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0002563!3.74e-07!9;CL:0002251!3.74e-07!9|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000160!4.86e-20!31;UBERON:0005409!6.14e-19!47;UBERON:0000344!2.20e-12!15;UBERON:0004119!1.22e-10!118;UBERON:0000925!1.22e-10!118;UBERON:0006595!1.22e-10!118;UBERON:0001007!1.23e-10!116;UBERON:0001555!1.23e-10!116;UBERON:0007026!1.23e-10!116;UBERON:0001242!1.45e-10!13;UBERON:0000060!1.45e-10!13;UBERON:0001262!1.45e-10!13;UBERON:0004786!1.45e-10!13;UBERON:0004921!1.59e-09!114;UBERON:0000485!8.43e-08!11;UBERON:0003350!3.74e-07!9;UBERON:0004808!3.74e-07!9;UBERON:0001277!3.74e-07!9;UBERON:0004923!5.18e-07!24|tfbs_overrepresentation_for_novel_motifs=0.752782,1.07244,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,4.89649,0.608816,2.02463,0.563758,0.902078,0.536514,3.19233,0.582863,0.831295,0.724277,0.610669,0.474221,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,3.12466,0.940919,0.657156,0.891887,1.08907,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,1.41919,1.44925,0.416814,1.03818,3.80288,1.04436,1.20986,0.684144,1.19917,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,2.26459,0.509215,0.464141,1.26539,1.05692,1.65883,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,1.38188,0.904334,0.135528|tfbs_overrepresentation_jaspar=MA0003.1;0.245953,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;2.60058,MA0019.1;1.08369,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.190475,MA0056.1;0,MA0057.1;0.896032,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;0.5406,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.343188,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;0.00834468,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;2.30458,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.766354,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;0.647985,MA0105.1;0.405648,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;1.3296,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;1.33779,MA0145.1;0.292366,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.0481552,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;1.60348,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;1.44603,MA0065.2;2.2142,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;2.49819,MA0155.1;2.3138,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;1.39671,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.166722,MA0163.1;0.157796,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;2.4151,MA0079.2;0.0332569,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0.165598587617144,0.489597927074028,0.719606105202249,0.351658691980711,0.250369204909122,1.00067801337868,1.05031669710722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0542026606006274,0,0,1.03941070977513,0.963083328338296,0.748907441410763,0.941577774994416,0.787201192134773,1.05018269041468,0.645764433320882,1.10010508393667,0,0,0,0.213919140975821,0.244861906851668,0.251772700668622,0,0,0,0,0,0,0,0,0.0243951393312357,0,0,0,0,0,0,0,0,0,0,0.036473692999102,0.060201751373516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107486292845058,0,0.0413718046239649,0,0,0,0,0,0,0,0,0,0,0,0.262070377075954,0.089870634893658,0,0,0,0,0.234338596833454,0,0,0,0.183082358271961,0,0,0,0.100818052764214,0.059344158508384,0.160370146741653,0.354986082243667,0.529265594933374,0.0576701149435126,0,0.0384775301049317,0.114987878451429,0.0966074946791153,0.203849947613232,0.13402895289797,0,0.576305823355977,0,0,0,0,0.924698987751905,0,0,0.965047193452735,0,0,0,0,0,0,0.0232010344389448,0,0,0.0435308600930066,0.34048796375111,0.0798624889873899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0556790680794923,0.0924627465433293,0.0868757024447852,0.0520057338346343,0.137828730493208,0.218541641684707,0.228110118222142,0.211230688008577,0.295435337357176,0.339811349492105,0.319923142514577,0.381750226898425,0.467354557263298,0.447926303382969,0,0,0.837622758779016,1.17822054464428,0,0,0.125047398935554,0.166610423858645,0.242419905655467,0.403767518679164,0.840550178444549,0.558586617945831,0.562698955768539,0.610386248389537,0.593826187158826,0.781310025326407,0.936710885404126,0.951277854363749,0.0251419146063118,0,0,0.026833566425996,0,0.0196259340864308,0,0,0.0422219209538459,0.0168444410470322,0.104982198959467,0,0,0,0,0,0,0.0732089286631787,0.0941187980067036,0.0633619511107467,0,0.091599149879148,0.0393154351023587,0.14084527499094,0.0238867236710338,0.113985437635229,0.584284940124605,0,0,0,0.030519339351902,0.0224197389723651,0.0872826640250236,0.118324019925094,0.196253307224104,0.144918079749151,0.238642105854671,0.461955859754154,0.540686304359933,0.578183287067841,0,0,0.057900067270923,0.122586750288999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394799476958322,0.507775707712249,0.299843917705186,0.418056348044809,0.309918815250463,0,0.0382396321089427,0.176160416268824,0.223119986756056,0.380731937948475,0.269597618619347,0.123991728945758,0.226063053579701,0.263988930277179,0,0.10259530662979,0,0,0,0,0,0,0,0,0.0610343310666611,0,0,0,0,0,0,0,0.720090840257094,0,0,0.0271622003567789,0.0491930916399115,0,0.018547884865738,0.0298244961268902,0,0,0,0.527585253510859,0,0.0761878589197066,0.0802956289379919,0.0549720114763355,0.0810500778291814,0.109183282636941,0.320007075115532,0.443513284177203,0.952799535120574,0,0,0.0580451471511418,0,0.051445604570745,0.0684339372996633,0.124100386773861,0.0993827736896093,0.0177189959645354,0.0795767411444995,0.057063472522347,0.0732839870471347,0.0795063727947373,0,0.0141538966644548,0.0176826707338301,0,0.0787037500278776,0,0.0199414728873146,0,0.0106319114964293,0,0,0,0.0160017698361234,0.914340729660605,0,0,0,0.301950559661898,0.363426429426914,0.163642726833417,0,0.117697460956878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0244314323529403,0,0.104192041947424,0.120876255993453,0,0.0327057221205027,0.0250151168385698,0.0378097465848715,0.0348856448087036,0.0468398688859929,0.056390921288728,0.043192691758359,0.02553579847638,0,0.0198795765065911,0.0426779099732737,0.0236506641178082,0,0.0392912409442346,0.0510059627291379,0.056264781223722,0.0729583017401753,0.0611980703630433,0.0184344791169644,0,0.0162294701681744,0.0396330787825441,0.0993214676313627,0,0.0255354818037453,0,0.0859922256434397,0.0517525693342407,0.122494596748587,0,0.115530296127315 | |||
|coexpression_dpi_cluster_scores_median=0.120671864823979,0.578845795747055,0.893483712999633,0.400075138318148,0.176350522035494,1.14384834318207,1.1832804111871,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,1.1498155857713,1.04508848908214,0.864306440119346,0.942192449101375,0.9632165831509,1.10658019361123,0.631077476625533,1.18787261600331,0,0,0,0.19802531727213,0.300466757177931,0.259277819461083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620577069359474,0,0,0,0,0,0,0,0,0,0,0,0.198582584603541,0,0,0,0,0,0.297347010565685,0,0,0,0.194062795919081,0,0,0,0.0851089148667383,0,0.177687811491981,0.468513623788752,0.585270807684784,0.0601091194109999,0,0,0.0901223798974778,0.114425913041783,0.231859934088733,0.138933868974914,0,0.590171396413399,0,0,0,0,1.01366236139526,0,0,1.13902390465734,0,0,0,0,0,0,0,0,0,0.0652962901395099,0.346758198498287,0.0509235292940968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719048481885784,0.0922800703916586,0.0780086007519514,0.165185349104694,0.229835835810773,0.186545793286102,0.230600145560333,0.26073884111471,0.448063228020549,0.3455760554733,0.36470102837094,0.404294926983005,0.459225050442381,0,0,0.981858835630106,1.35573775872349,0,0,0.141951942539884,0.147171275172461,0.159794533105191,0.401711503001371,0.883286977870321,0.615874347399584,0.722032942583948,0.746322676061637,0.593780051515429,0.862830928171301,1.02160578188384,1.05520037981201,0,0,0,0,0,0.0294389011296462,0,0,0.0633328814307688,0,0.112756652096095,0,0,0,0,0,0,0.109813392994768,0.0652566657696677,0,0,0.137398724818722,0,0.177582020809476,0,0.170978156452844,0.654206451620456,0,0,0,0,0,0.0927359537809747,0.0774164737207147,0.168174863922987,0.159245076116426,0.254614253830089,0.447545072974433,0.61366528635527,0.703306310736484,0,0,0,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3837078292652,0.60499405997329,0.172795775280084,0.423196907296558,0.36688061805648,0,0,0.194740515512231,0.275519968215989,0.404350550054662,0.360241417805924,0.134665885471472,0.233756033654604,0.289613536706145,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0.834396332438691,0,0,0,0.0737896374598673,0,0,0,0,0,0,0.463794662544282,0,0.0803809427109337,0.0849373898696927,0.0824580172145032,0.0857765460992942,0.103710933695783,0.365947362366015,0.41002363166848,0.974280126906661,0,0,0.0605152268483434,0,0.0771684068561175,0.0527554171614426,0.126427630498926,0.130999727855463,0,0.0433069931089932,0,0.109925980570702,0.119259559192106,0,0,0,0,0.0787037500278776,0,0,0,0,0,0,0,0,0.9511219418802,0,0,0,0.334280313231288,0.287446174218998,0.135547100918658,0,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.081359932135904,0.120876255993453,0,0,0,0.0388749848471105,0.0523284672130554,0.0472245945615809,0,0,0,0,0,0,0,0,0.0589368614163519,0.0390607415003592,0.0352754493378881,0.0729583017401753,0,0,0,0,0.0408018333703219,0.148982201447044,0,0,0,0.091291089277545,0,0.0760168881589905,0,0.0905641158318875 | |||
|gostat_on_MCL_coexpression= | |||
|ontology_enrichment_celltype=CL:0002563!3.74e-07!9;CL:0002251!3.74e-07!9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.86e-20!31;UBERON:0005409!6.14e-19!47;UBERON:0000344!2.20e-12!15;UBERON:0004119!1.22e-10!118;UBERON:0000925!1.22e-10!118;UBERON:0006595!1.22e-10!118;UBERON:0001007!1.23e-10!116;UBERON:0001555!1.23e-10!116;UBERON:0007026!1.23e-10!116;UBERON:0001242!1.45e-10!13;UBERON:0000060!1.45e-10!13;UBERON:0001262!1.45e-10!13;UBERON:0004786!1.45e-10!13;UBERON:0004921!1.59e-09!114;UBERON:0000485!8.43e-08!11;UBERON:0003350!3.74e-07!9;UBERON:0004808!3.74e-07!9;UBERON:0001277!3.74e-07!9;UBERON:0004923!5.18e-07!24 | |||
|tfbs_overrepresentation_for_novel_motifs=0.752782,1.07244,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,4.89649,0.608816,2.02463,0.563758,0.902078,0.536514,3.19233,0.582863,0.831295,0.724277,0.610669,0.474221,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,3.12466,0.940919,0.657156,0.891887,1.08907,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,1.41919,1.44925,0.416814,1.03818,3.80288,1.04436,1.20986,0.684144,1.19917,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,2.26459,0.509215,0.464141,1.26539,1.05692,1.65883,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,1.38188,0.904334,0.135528 | |||
|tfbs_overrepresentation_jaspar=MA0003.1;0.245953,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;2.60058,MA0019.1;1.08369,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.190475,MA0056.1;0,MA0057.1;0.896032,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;0.5406,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.343188,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;0.00834468,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;2.30458,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.766354,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;0.647985,MA0105.1;0.405648,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;1.3296,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;1.33779,MA0145.1;0.292366,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.0481552,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;1.60348,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;1.44603,MA0065.2;2.2142,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;2.49819,MA0155.1;2.3138,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;1.39671,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.166722,MA0163.1;0.157796,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;2.4151,MA0079.2;0.0332569,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0 | |||
}} |
Latest revision as of 20:26, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr8:112563230..112563250,- | p1@Chst4 |
Mm9::chr8:112563251..112563262,- | p3@Chst4 |
Mm9::chr8:112563271..112563296,- | p2@Chst4 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.74e-07 | 9 |
epithelial cell of alimentary canal | 3.74e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.86e-20 | 31 |
gastrointestinal system | 6.14e-19 | 47 |
mucosa | 2.20e-12 | 15 |
endoderm-derived structure | 1.22e-10 | 118 |
endoderm | 1.22e-10 | 118 |
presumptive endoderm | 1.22e-10 | 118 |
digestive system | 1.23e-10 | 116 |
digestive tract | 1.23e-10 | 116 |
primitive gut | 1.23e-10 | 116 |
intestinal mucosa | 1.45e-10 | 13 |
anatomical wall | 1.45e-10 | 13 |
wall of intestine | 1.45e-10 | 13 |
gastrointestinal system mucosa | 1.45e-10 | 13 |
subdivision of digestive tract | 1.59e-09 | 114 |
simple columnar epithelium | 8.43e-08 | 11 |
epithelium of mucosa | 3.74e-07 | 9 |
gastrointestinal system epithelium | 3.74e-07 | 9 |
intestinal epithelium | 3.74e-07 | 9 |
organ component layer | 5.18e-07 | 24 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.245953 |
MA0004.1 | 0.801718 |
MA0006.1 | 0.60285 |
MA0007.1 | 0.784593 |
MA0009.1 | 1.27673 |
MA0014.1 | 0.133574 |
MA0017.1 | 2.60058 |
MA0019.1 | 1.08369 |
MA0024.1 | 1.23079 |
MA0025.1 | 1.51835 |
MA0027.1 | 2.9431 |
MA0028.1 | 0.61552 |
MA0029.1 | 1.20789 |
MA0030.1 | 1.21482 |
MA0031.1 | 1.17722 |
MA0038.1 | 0.963265 |
MA0040.1 | 1.28983 |
MA0041.1 | 0.714279 |
MA0042.1 | 0.69885 |
MA0043.1 | 1.3775 |
MA0046.1 | 1.31428 |
MA0048.1 | 0.353763 |
MA0050.1 | 0.845669 |
MA0051.1 | 0.973068 |
MA0052.1 | 1.29825 |
MA0055.1 | 0.190475 |
MA0056.1 | 0 |
MA0057.1 | 0.896032 |
MA0058.1 | 0.690848 |
MA0059.1 | 0.705317 |
MA0060.1 | 0.502699 |
MA0061.1 | 0.5406 |
MA0063.1 | 0 |
MA0066.1 | 0.951196 |
MA0067.1 | 1.63197 |
MA0068.1 | 0.343188 |
MA0069.1 | 1.29861 |
MA0070.1 | 1.28847 |
MA0071.1 | 0.844726 |
MA0072.1 | 1.2796 |
MA0073.1 | 0.00834468 |
MA0074.1 | 0.911576 |
MA0076.1 | 0.657929 |
MA0077.1 | 1.2569 |
MA0078.1 | 2.30458 |
MA0081.1 | 0.732313 |
MA0083.1 | 1.37668 |
MA0084.1 | 1.96428 |
MA0087.1 | 1.33189 |
MA0088.1 | 0.766354 |
MA0089.1 | 0 |
MA0090.1 | 0.762482 |
MA0091.1 | 0.816659 |
MA0092.1 | 0.762845 |
MA0093.1 | 0.62555 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.89873 |
MA0101.1 | 0.71579 |
MA0103.1 | 0.647985 |
MA0105.1 | 0.405648 |
MA0106.1 | 1.01755 |
MA0107.1 | 0.640607 |
MA0108.2 | 1.10817 |
MA0109.1 | 0 |
MA0111.1 | 0.778753 |
MA0113.1 | 0.986839 |
MA0114.1 | 1.3296 |
MA0115.1 | 1.38041 |
MA0116.1 | 0.602598 |
MA0117.1 | 1.34691 |
MA0119.1 | 0.716476 |
MA0122.1 | 1.36752 |
MA0124.1 | 1.57762 |
MA0125.1 | 1.5017 |
MA0130.1 | 0 |
MA0131.1 | 1.07881 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.4152 |
MA0136.1 | 0.933582 |
MA0139.1 | 0.462282 |
MA0140.1 | 0.898603 |
MA0141.1 | 0.671467 |
MA0142.1 | 1.16183 |
MA0143.1 | 1.00467 |
MA0144.1 | 1.33779 |
MA0145.1 | 0.292366 |
MA0146.1 | 0.151124 |
MA0147.1 | 0.556853 |
MA0148.1 | 0.820161 |
MA0149.1 | 0.722227 |
MA0062.2 | 0.412742 |
MA0035.2 | 0.903829 |
MA0039.2 | 0.0481552 |
MA0138.2 | 1.07027 |
MA0002.2 | 0.466067 |
MA0137.2 | 1.60348 |
MA0104.2 | 0.48458 |
MA0047.2 | 0.962424 |
MA0112.2 | 1.44603 |
MA0065.2 | 2.2142 |
MA0150.1 | 0.784464 |
MA0151.1 | 0 |
MA0152.1 | 0.962542 |
MA0153.1 | 1.43238 |
MA0154.1 | 2.49819 |
MA0155.1 | 2.3138 |
MA0156.1 | 0.656895 |
MA0157.1 | 1.12772 |
MA0158.1 | 0 |
MA0159.1 | 1.39671 |
MA0160.1 | 0.823568 |
MA0161.1 | 0 |
MA0162.1 | 0.166722 |
MA0163.1 | 0.157796 |
MA0164.1 | 0.933981 |
MA0080.2 | 0.64167 |
MA0018.2 | 0.944669 |
MA0099.2 | 2.4151 |
MA0079.2 | 0.0332569 |
MA0102.2 | 2.01714 |
MA0258.1 | 0.520639 |
MA0259.1 | 0.543506 |
MA0442.1 | 0 |