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MCL coexpression mm9:312: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!9.10e-31!31;UBERON:0005409!3.83e-24!47;UBERON:0000344!1.57e-17!15;UBERON:0001242!3.44e-15!13;UBERON:0000060!3.44e-15!13;UBERON:0001262!3.44e-15!13;UBERON:0004786!3.44e-15!13;UBERON:0003350!1.18e-10!9;UBERON:0004808!1.18e-10!9;UBERON:0001277!1.18e-10!9;UBERON:0004923!1.53e-10!24;UBERON:0000485!2.49e-08!11
|tfbs_overrepresentation_for_novel_motifs=1.54254,0.555102,0.0766995,0.110767,0.581946,0.378043,0.515388,0.311893,0.169209,0.116705,0.145866,0.496525,0.0578321,0.534797,0.988928,0,0.321317,0.128535,0.473812,0.980393,0.477574,0.898706,0.180675,0.134743,0.578246,0.199623,0.255738,1.31807,0.411918,0.487905,0.122529,1.04073,0.550846,0.859556,0.039244,0.0369657,0.028285,0.490894,0.242857,0.194363,0.311778,0.395563,0.594452,0.356689,0.462897,0.341631,0.260475,0.432194,0.461946,0.187406,0.307679,0.218134,0.151703,0.524674,0.540069,0.185973,1.16882,0.157588,0.412631,0.184626,0.386651,0.224758,0.36715,0.298968,0.564065,0.330595,0.662968,0.992392,0.382806,0.851665,0.0683061,0.550805,0.00566097,0.569888,0.00666273,0.559889,0.376861,0.252107,0.372571,0.22435,1.56025,0.33504,0.223742,0.295929,0.468641,0.0449409,0.0277783,0.164918,0.264106,1.14963,0.72731,0.472928,0.41392,0.331179,0.235792,0.20598,0.305722,0.416272,0.260664,0.843168,0.117729,0.403003,0.509378,0.308141,0.307322,0.394918,0.354606,0.841739,0.230257,1.75783,0.289819,0.510939,0.489443,0.149001,0.733862,0.130578,0.146366,0.112806,0.322341,0.27556,2.40587,1.41182,0.581967,0.251444,0.784453,0.375593,0.178582,0.408257,0.661578,0.145159,0.494561,0.106861,0.634573,0.568121,0.753996,0.00453331,2.80815,0.793091,0.708276,1.51166,1.11861,0.667289,0.209097,1.05976,0.302305,0.396227,4.7185,1.47245,0.0944245,0.0343953,1.01598,0.000436872,0.526055,0.0854545,0.194455,0.598868,0.218838,0.165822,0.0878751,0.0931012,0.717087,0.467905,0.980978,0.28683,0.299755,1.05688,0.116624,0.1646,0.751039
|tfbs_overrepresentation_jaspar=MA0003.1;0.314877,MA0004.1;0.358028,MA0006.1;0.148601,MA0007.1;0.103069,MA0009.1;0.425374,MA0014.1;0.0519867,MA0017.1;2.04345,MA0019.1;0.279241,MA0024.1;0.388875,MA0025.1;0.630472,MA0027.1;2.00714,MA0028.1;0.0410625,MA0029.1;0.970182,MA0030.1;0.376415,MA0031.1;0.347586,MA0038.1;0.578883,MA0040.1;0.435948,MA0041.1;0.926637,MA0042.1;1.84423,MA0043.1;0.5085,MA0046.1;0.45588,MA0048.1;0.242961,MA0050.1;0.132769,MA0051.1;0.593414,MA0052.1;0.442788,MA0055.1;0.266841,MA0056.1;0,MA0057.1;0.0453438,MA0058.1;0.0648829,MA0059.1;0.246439,MA0060.1;0.0769264,MA0061.1;1.10584,MA0063.1;0,MA0066.1;0.561152,MA0067.1;0.732677,MA0068.1;0.0485678,MA0069.1;0.443076,MA0070.1;0.434849,MA0071.1;2.59153,MA0072.1;0.427684,MA0073.1;4.49221e-06,MA0074.1;0.504232,MA0076.1;0.0537082,MA0077.1;0.409496,MA0078.1;0.64778,MA0081.1;0.0806296,MA0083.1;0.507806,MA0084.1;1.04444,MA0087.1;0.470385,MA0088.1;0.113219,MA0089.1;0,MA0090.1;0.64191,MA0091.1;0.118208,MA0092.1;0.310962,MA0093.1;0.168245,MA0095.1;0,MA0098.1;0,MA0100.1;0.486222,MA0101.1;0.931055,MA0103.1;1.13445,MA0105.1;0.572375,MA0106.1;0.234207,MA0107.1;0.719363,MA0108.2;0.296634,MA0109.1;0,MA0111.1;0.100423,MA0113.1;0.214338,MA0114.1;6.2312,MA0115.1;1.2728,MA0116.1;0.037601,MA0117.1;0.48285,MA0119.1;0.549042,MA0122.1;0.500096,MA0124.1;2.75525,MA0125.1;0.615761,MA0130.1;0,MA0131.1;0.27582,MA0132.1;0,MA0133.1;0,MA0135.1;0.540552,MA0136.1;0.181597,MA0139.1;0.0551976,MA0140.1;0.942703,MA0141.1;0.463338,MA0142.1;0.336004,MA0143.1;0.641011,MA0144.1;0.10174,MA0145.1;0.550254,MA0146.1;0.426395,MA0147.1;0.810116,MA0148.1;0.119923,MA0149.1;0.0766295,MA0062.2;0.00633014,MA0035.2;2.17789,MA0039.2;4.44528e-05,MA0138.2;0.743216,MA0002.2;0.309453,MA0137.2;1.20991,MA0104.2;0.579417,MA0047.2;0.199051,MA0112.2;0.373458,MA0065.2;1.29969,MA0150.1;0.10301,MA0151.1;0,MA0152.1;0.199123,MA0153.1;1.36696,MA0154.1;1.11864,MA0155.1;0.164975,MA0156.1;0.76373,MA0157.1;0.310784,MA0158.1;0,MA0159.1;0.29096,MA0160.1;0.772496,MA0161.1;0,MA0162.1;0.00482855,MA0163.1;0.154869,MA0164.1;1.02621,MA0080.2;0.409683,MA0018.2;0.551637,MA0099.2;0.26517,MA0079.2;1.5863e-05,MA0102.2;1.09525,MA0258.1;1.0202,MA0259.1;0.765551,MA0442.1;0
}}

Latest revision as of 15:05, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:60232084..60232110,-p5@Atpaf2
Mm9::chr14:55029088..55029099,-p@chr14:55029088..55029099
-
Mm9::chr16:21855183..21855199,+p@chr16:21855183..21855199
+
Mm9::chr16:32431376..32431394,+p5@Pcyt1a
Mm9::chr18:61195409..61195418,-p@chr18:61195409..61195418
-
Mm9::chr18:61195429..61195472,-p@chr18:61195429..61195472
-
Mm9::chr18:74946737..74946754,+p@chr18:74946737..74946754
+
Mm9::chr18:74946758..74946777,+p@chr18:74946758..74946777
+
Mm9::chr18:74946790..74946802,+p@chr18:74946790..74946802
+
Mm9::chr19:3708287..3708395,+p1@1810055G02Rik
Mm9::chr19:55326388..55326393,+p@chr19:55326388..55326393
+
Mm9::chr3:107680023..107680041,+p2@Eps8l3
Mm9::chr3:137770203..137770237,+p@chr3:137770203..137770237
+
Mm9::chr3:89159481..89159506,-p1@Dcst1
Mm9::chr5:104450947..104450964,-p3@Hsd17b11
Mm9::chr5:17334701..17334708,-p@chr5:17334701..17334708
-
Mm9::chr5:17334715..17334762,-p@chr5:17334715..17334762
-
Mm9::chr5:17334764..17334790,-p@chr5:17334764..17334790
-
Mm9::chr5:17334800..17334814,-p@chr5:17334800..17334814
-
Mm9::chr7:20262098..20262116,-p1@Apoc2
Mm9::chr7:5035524..5035548,+p4@Epn1
Mm9::chr9:121614414..121614440,-p2@Sec22c
Mm9::chr9:46050186..46050203,+p@chr9:46050186..46050203
+
Mm9::chr9:46050270..46050279,+p@chr9:46050270..46050279
+
Mm9::chr9:46051487..46051505,+p@chr9:46051487..46051505
+
Mm9::chr9:60181894..60181932,+p@chr9:60181894..60181932
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.314877
MA0004.10.358028
MA0006.10.148601
MA0007.10.103069
MA0009.10.425374
MA0014.10.0519867
MA0017.12.04345
MA0019.10.279241
MA0024.10.388875
MA0025.10.630472
MA0027.12.00714
MA0028.10.0410625
MA0029.10.970182
MA0030.10.376415
MA0031.10.347586
MA0038.10.578883
MA0040.10.435948
MA0041.10.926637
MA0042.11.84423
MA0043.10.5085
MA0046.10.45588
MA0048.10.242961
MA0050.10.132769
MA0051.10.593414
MA0052.10.442788
MA0055.10.266841
MA0056.10
MA0057.10.0453438
MA0058.10.0648829
MA0059.10.246439
MA0060.10.0769264
MA0061.11.10584
MA0063.10
MA0066.10.561152
MA0067.10.732677
MA0068.10.0485678
MA0069.10.443076
MA0070.10.434849
MA0071.12.59153
MA0072.10.427684
MA0073.14.49221e-06
MA0074.10.504232
MA0076.10.0537082
MA0077.10.409496
MA0078.10.64778
MA0081.10.0806296
MA0083.10.507806
MA0084.11.04444
MA0087.10.470385
MA0088.10.113219
MA0089.10
MA0090.10.64191
MA0091.10.118208
MA0092.10.310962
MA0093.10.168245
MA0095.10
MA0098.10
MA0100.10.486222
MA0101.10.931055
MA0103.11.13445
MA0105.10.572375
MA0106.10.234207
MA0107.10.719363
MA0108.20.296634
MA0109.10
MA0111.10.100423
MA0113.10.214338
MA0114.16.2312
MA0115.11.2728
MA0116.10.037601
MA0117.10.48285
MA0119.10.549042
MA0122.10.500096
MA0124.12.75525
MA0125.10.615761
MA0130.10
MA0131.10.27582
MA0132.10
MA0133.10
MA0135.10.540552
MA0136.10.181597
MA0139.10.0551976
MA0140.10.942703
MA0141.10.463338
MA0142.10.336004
MA0143.10.641011
MA0144.10.10174
MA0145.10.550254
MA0146.10.426395
MA0147.10.810116
MA0148.10.119923
MA0149.10.0766295
MA0062.20.00633014
MA0035.22.17789
MA0039.24.44528e-05
MA0138.20.743216
MA0002.20.309453
MA0137.21.20991
MA0104.20.579417
MA0047.20.199051
MA0112.20.373458
MA0065.21.29969
MA0150.10.10301
MA0151.10
MA0152.10.199123
MA0153.11.36696
MA0154.11.11864
MA0155.10.164975
MA0156.10.76373
MA0157.10.310784
MA0158.10
MA0159.10.29096
MA0160.10.772496
MA0161.10
MA0162.10.00482855
MA0163.10.154869
MA0164.11.02621
MA0080.20.409683
MA0018.20.551637
MA0099.20.26517
MA0079.21.5863e-05
MA0102.21.09525
MA0258.11.0202
MA0259.10.765551
MA0442.10
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