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MCL coexpression mm9:387: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0180790441800504,0.0867006546913599,0,0,0,0.00439442491918076,0.0363974770700186,0,0,0,0,0,0,0.0167283543750889,0.0411126530948397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107200755467032,0,0,0,0.0729739598786402,0,0,0,0,0,0,0,0,0,0,0,0.0392671451337994,0,0,0,0,0.0596815153451078,0.0284918711810782,0,0.0112022805567888,0,0,0.026094352054724,0.0620577069359474,0,0.0064329936918182,0,0.00978885982215175,0.172833870070641,0.0617533076901792,0,0.0578074284787346,0,0,0,0,0.113746810472135,0.299101661750916,0.563353647014033,0.217425091336261,0.00759084458685735,0.0570741246689917,0,0,0,0,0,0,0,0,0.0422778101559148,0,0.0893284091371433,0,0.0601091194109999,0.0381026944665137,0.115432590314795,0.10978290305946,0.162016838976164,0.0917293418104957,0.105313916739023,0,0.032110124120276,0,0,0,0,0,0,0,0,0.00648262560580037,0,0,0,0,0,0,0,0,0,0,0,0,0.961617962131637,0,0,0,0.0304819657131131,0.0066439770504329,0.0143953742384912,0.0147794493381753,0.619820249648273,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0709378490437282,0,0,0.0568441123283629,0,0,0.0479619276176895,0,0.0410750139987781,0,0,0,0,0,0.0059004692245676,0,0,0.0101781492818703,0,0,0,0,0,0,0,0,0,0,0,0.0052159040861393,0,0,0.046982063026719,0,0.0805006992779881,0.0183227587904871,0.0255858873557184,0,0,0.0559254307238476,0,0.112756652096095,0,0,0,0,0,0,0,0.0839581792630393,0.10536076625968,1.01854430347599,0.209812826405888,0.187453235314254,0.167625653876833,0.244309748207287,0.149919014584492,0.0736278867910527,0,0,0,0,0,0.0442245264048459,0.0774164737207147,0.0635717028550276,0.0692431921482119,0.0144891808798887,0.123108665731713,0.0691813633419548,0.0586723554240733,0,0,0.152641059944417,0.0579075369991387,0,0.0481354699899057,0,0,0,0,0,0,0,0,0,0,0,0,0.0576433181427177,0,0.0016879525817687,0.00501434107100095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0053568059090311,0,0,0.0559124010019635,0.0661577744756082,0,0,0,0,0,0,0,0.0489745727197172,0,0,0.0570020606184054,0,0,0,0,0,0,0,0,0.0562185712770556,0,0,0,0.0436804799611861,0.074160667038469,0,0.0417004490176252,0.034489466458534,0,0,0,0,0.0168676941486512,0.0340086838947513,0,0.0268316260228533,0.0677982110636083,0.0711011496439054,0.0531569878936061,0.0433069931089932,0,0,0,0,0.0424616899933645,0.0530480122014902,0,0,0.0319631736741799,0.0598244186619439,0.00813626485264455,0.00103138499297467,0,0,0.0398944891531444,0.0480053095083702,0,0,0.0263284041487343,0,0,0,0.0720628852276499,0,0,0,0,0,0.0688732037536692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00510509173817515,0,0,0,0,0,0.0596387295197733,0,0,0,0,0,0.0064007207033728,0,0,0,0,0,0.0115547245202202,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002530!1.17e-10!65;UBERON:0002368!1.62e-10!60;UBERON:0009569!1.81e-10!66;UBERON:0002365!4.01e-08!25;UBERON:0002330!4.01e-08!25;UBERON:0005172!1.04e-07!49;UBERON:0005173!1.04e-07!49;UBERON:0002417!1.04e-07!49;UBERON:0000916!1.04e-07!49;UBERON:0001041!1.91e-07!80;UBERON:0002107!2.53e-07!22;UBERON:0007499!2.53e-07!22;UBERON:0006925!2.53e-07!22;UBERON:0009497!2.53e-07!22;UBERON:0000015!2.53e-07!22;UBERON:0002423!2.53e-07!22;UBERON:0006235!2.53e-07!22;UBERON:0008835!2.53e-07!22;UBERON:0003894!2.53e-07!22;UBERON:0004161!2.53e-07!22;UBERON:0008836!2.53e-07!22;UBERON:0002369!4.02e-07!7;UBERON:0006858!4.02e-07!7;UBERON:0000949!5.24e-07!72;UBERON:0005911!5.57e-07!69;UBERON:0005177!6.48e-07!79;UBERON:0009854!8.42e-07!23;UBERON:0009856!8.42e-07!23
|tfbs_overrepresentation_for_novel_motifs=0.138811,0.0416895,0.122882,0.96166,0.493134,0.521151,0.675449,0.517797,0.0306972,0.00895429,0.208344,1.22048,0.0278964,0.249744,0.249925,0,0.405853,0.474154,0.0236414,0.100955,0.101766,0.0564774,0.249061,0.843635,0.127411,0.270807,0.0214696,0.190063,0.0855806,0.158048,0.18034,1.23631,0.0591615,0.197789,0.0716204,0.0141754,0.0551797,0.228897,0.701925,0.142999,0.483482,0.183887,0.111877,0.0723454,0.165871,0.158598,0.339166,0.201138,0.162034,0.293801,0.39102,0.793253,0.0541297,0.621761,0.63782,0.255168,0.30656,0.222181,0.216792,0.705824,0.476165,0.299289,0.323654,0.381514,0.26368,0.41591,0.765078,1.10104,0.472057,0.958179,0.111851,1.67175,0.00332225,1.60518,0.0177244,0.0711042,0.945168,0.329879,0.461106,0.693097,0.123342,0.420719,0.807577,0.796919,0.563042,0.000337993,1.08023,0.012217,0.343187,1.25993,0.831175,0.56755,0.505205,1.31336,0.0448178,0.0383905,0.815011,0.507703,0.339375,0.0446351,0.202817,0.493598,0.605777,0.391523,0.390631,0.183584,0.44182,0.575829,0.106835,0.102757,0.418563,0.607409,0.34141,0.212058,0.837889,0.061076,0.000774063,0.168461,0.406964,1.1708,0.673855,0.363969,0.748598,0.329142,0.889642,0.464341,0.689677,0.499188,0.763646,0.881568,1.44068,0.941762,0.735806,0.733457,0.858504,0.127797,0.442998,0.184858,0.811653,1.62404,1.22863,0.769526,0.769996,0.50313,1.00119,0.184199,0.341725,1.58469,0.145585,0.0644667,0.0126545,0.00215267,0.623204,0.0405022,0.264901,0.698893,0.795055,0.266327,1.35996,0.143914,0.820693,0.562267,0.464731,0.133047,0.382373,0.259222,0.0547089,0.230394,0.000655516
}}

Latest revision as of 15:13, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr19:29686095..29686114,-p@chr19:29686095..29686114
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Mm9::chr2:75710016..75710020,+p@chr2:75710016..75710020
+
Mm9::chr2:75765481..75765501,+p@chr2:75765481..75765501
+
Mm9::chr8:126274990..126274993,-p@chr8:126274990..126274993
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Mm9::chr9:77765055..77765064,+p8@Elovl5
Mm9::chr9:77783183..77783189,+p@chr9:77783183..77783189
+
Mm9::chr9:77804942..77804984,+p@chr9:77804942..77804984
+
Mm9::chr9:77808678..77808707,+p@chr9:77808678..77808707
+
Mm9::chr9:77810108..77810114,+p@chr9:77810108..77810114
+
Mm9::chr9:77824569..77824580,+p@chr9:77824569..77824580
+
Mm9::chr9:77824689..77824700,+p@chr9:77824689..77824700
+
Mm9::chr9:77824718..77824720,-p@chr9:77824718..77824720
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Mm9::chr9:77829313..77829331,+p@chr9:77829313..77829331
+
Mm9::chr9:77830487..77830494,+p@chr9:77830487..77830494
+
Mm9::chr9:77830495..77830505,+p@chr9:77830495..77830505
+
Mm9::chr9:77830528..77830537,+p@chr9:77830528..77830537
+
Mm9::chr9:77830961..77830972,+p@chr9:77830961..77830972
+
Mm9::chr9:77831324..77831354,+p@chr9:77831324..77831354
+
Mm9::chr9:77831378..77831389,+p@chr9:77831378..77831389
+
Mm9::chr9:77831589..77831607,+p@chr9:77831589..77831607
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gland1.17e-1065
endocrine gland1.62e-1060
subdivision of trunk1.81e-1066
exocrine gland4.01e-0825
exocrine system4.01e-0825
abdomen element1.04e-0749
abdominal segment element1.04e-0749
abdominal segment of trunk1.04e-0749
abdomen1.04e-0749
foregut1.91e-0780
liver2.53e-0722
epithelial sac2.53e-0722
digestive gland2.53e-0722
epithelium of foregut-midgut junction2.53e-0722
anatomical boundary2.53e-0722
hepatobiliary system2.53e-0722
foregut-midgut junction2.53e-0722
hepatic diverticulum2.53e-0722
liver primordium2.53e-0722
septum transversum2.53e-0722
liver bud2.53e-0722
adrenal gland4.02e-077
adrenal/interrenal gland4.02e-077
endocrine system5.24e-0772
endo-epithelium5.57e-0769
trunk region element6.48e-0779
digestive tract diverticulum8.42e-0723
sac8.42e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000578468
MA0004.10.166273
MA0006.10.243994
MA0007.10.156418
MA0009.11.28645
MA0014.10.000608625
MA0017.10.280372
MA0019.10.945544
MA0024.10.47854
MA0025.10.731571
MA0027.12.12059
MA0028.10.0742616
MA0029.10.459477
MA0030.11.17495
MA0031.10.434261
MA0038.11.36706
MA0040.10.528552
MA0041.11.24273
MA0042.11.74423
MA0043.10.604858
MA0046.10.549602
MA0048.10.0453937
MA0050.10.562435
MA0051.10.277682
MA0052.10.535783
MA0055.10.0395047
MA0056.10
MA0057.10.0382333
MA0058.10.107291
MA0059.10.114315
MA0060.10.0366148
MA0061.10.179869
MA0063.10
MA0066.12.87154
MA0067.10.836675
MA0068.10.242157
MA0069.10.536088
MA0070.10.52739
MA0071.10.192126
MA0072.11.29166
MA0073.13.50152e-06
MA0074.10.235223
MA0076.10.0921124
MA0077.10.500504
MA0078.10.820111
MA0081.10.402057
MA0083.10.604132
MA0084.11.15371
MA0087.10.564877
MA0088.10.00305519
MA0089.10
MA0090.10.144081
MA0091.11.58527
MA0092.10.14428
MA0093.10.269439
MA0095.10
MA0098.10
MA0100.10.226682
MA0101.10.380246
MA0103.10.295593
MA0105.10.189687
MA0106.10.309901
MA0107.10.0845854
MA0108.20.378962
MA0109.10
MA0111.10.153116
MA0113.10.783511
MA0114.10.398583
MA0115.10.60742
MA0116.10.243718
MA0117.10.577975
MA0119.10.119877
MA0122.10.596061
MA0124.10.786128
MA0125.10.716372
MA0130.10
MA0131.10.356119
MA0132.10
MA0133.10
MA0135.10.638323
MA0136.10.697748
MA0139.10.271406
MA0140.10.226598
MA0141.10.0982176
MA0142.10.421761
MA0143.10.300449
MA0144.10.0479235
MA0145.10.00374848
MA0146.10.00113485
MA0147.10.0528647
MA0148.10.17717
MA0149.10.12279
MA0062.20.0170313
MA0035.21.21473
MA0039.21.29164e-07
MA0138.21.64983
MA0002.21.61998
MA0137.20.319762
MA0104.20.0319344
MA0047.20.270154
MA0112.20.155422
MA0065.20.468632
MA0150.10.156344
MA0151.10
MA0152.10.744061
MA0153.11.57358
MA0154.10.0439699
MA0155.10.0287143
MA0156.10.306246
MA0157.10.394402
MA0158.10
MA0159.10.0571096
MA0160.10.179214
MA0161.10
MA0162.10.000212795
MA0163.10.0198187
MA0164.10.250399
MA0080.20.288132
MA0018.20.257759
MA0099.20.344363
MA0079.24.87241e-11
MA0102.21.20505
MA0258.10.658099
MA0259.10.048545
MA0442.10
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