FFCP PHASE1:Hg19::chr4:77068930..77068959,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:77068930..77068959,-
|short_description=p4@NUP54
|description=CAGE_peak_4_at_NUP54_5end
|association_with_transcript=14bp_to_ENST00000506098_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=53371 | |EntrezGene=53371 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17359 | |HGNC=17359 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=14bp_to_ENST00000506098_5end | |||
|cluster_id=chr4:77068930..77068959,- | |||
|description=CAGE_peak_4_at_NUP54_5end | |||
|id=chr4:77068930..77068959,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;5.74e-24;3!CL:0000540;6.66e-21;6!CL:0000404;6.66e-21;6!CL:0002602;9.96e-17;2!CL:0000064;3.59e-11;3!CL:0000067;3.59e-11;3!CL:0005012;3.59e-11;3!CL:0002304;3.59e-11;3!CL:0000097;4.84e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,2.01e-23,3;CL:0000540,7.43e-21,6;CL:0000031,7.43e-21,6;CL:0000404,7.43e-21,6;CL:0002602,4.91e-17,2;CL:0000047,1.05e-15,8;CL:0000064,6.01e-11,3;CL:0000067,6.01e-11,3;CL:0005012,6.01e-11,3;CL:0002304,6.01e-11,3;CL:0000097,6.00e-07,5;CL:0002028,6.00e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000031;6.66e-21;6!UBERON:0009117;1.46e-07;10!UBERON:0005564;1.46e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;1.21e-08;22!DOID:2994;1.21e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.20e-08,22;DOID:2994,1.20e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0002200!7.82e-07!11;UBERON:0006876!7.82e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;7.10e-39;5!UBERON:0002216;7.10e-39;5!UBERON:0011134;7.10e-39;5!UBERON:0002209;7.10e-39;5!UBERON:0002213;7.10e-39;5!UBERON:0007844;7.10e-39;5!UBERON:0011138;7.10e-39;5!UBERON:0001130;7.10e-39;5!UBERON:0001066;7.10e-39;5!UBERON:0001468;7.10e-39;5!UBERON:0004905;2.73e-24;8!UBERON:0000982;2.73e-24;8!UBERON:0004770;2.73e-24;8!UBERON:0002242;5.74e-24;3!UBERON:0006444;9.96e-17;2!UBERON:0001995;9.96e-17;2!UBERON:0004715;9.96e-17;2!UBERON:0000075;4.39e-12;16!UBERON:0002418;1.83e-11;3!UBERON:0004755;1.83e-11;3!UBERON:0001778;3.59e-11;3!UBERON:0001775;3.59e-11;3!UBERON:0000488;1.35e-08;4!UBERON:0004765;2.33e-07;26!UBERON:0007625;8.46e-07;11!UBERON:0006876;8.46e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.24e-38,5;UBERON:0002216,1.24e-38,5;UBERON:0011134,1.24e-38,5;UBERON:0002209,1.24e-38,5;UBERON:0002213,1.24e-38,5;UBERON:0005856,1.24e-38,5;UBERON:0005866,1.24e-38,5;UBERON:0005863,1.24e-38,5;UBERON:0007844,1.24e-38,5;UBERON:0011138,1.24e-38,5;UBERON:0001130,1.24e-38,5;UBERON:0001066,1.24e-38,5;UBERON:0001468,1.24e-38,5;UBERON:0004905,3.86e-24,8;UBERON:0000982,3.86e-24,8;UBERON:0004770,3.86e-24,8;UBERON:0002242,2.01e-23,3;UBERON:0003068,2.01e-23,3;UBERON:0002328,2.01e-23,3;UBERON:0004880,2.01e-23,3;UBERON:0006444,4.91e-17,2;UBERON:0001995,4.91e-17,2;UBERON:0004715,4.91e-17,2;UBERON:0000075,5.19e-12,16;UBERON:0002418,1.15e-11,3;UBERON:0004755,1.15e-11,3;UBERON:0001778,6.01e-11,3;UBERON:0001775,6.01e-11,3;UBERON:0000488,1.98e-08,4;UBERON:0006876,9.56e-07,11 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,2.47532705920093,1.98838425436749,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0.0787107813136792,0.786728553697808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0.16072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0.263384084775077,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.80642697289893,0.267440195783507,0.289648807765598,2.43806866313962,0,0.12786256184353,0.361439152384566,0,0,0,0,1.22895262313288,0.665188192387692,1.31752178539689,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267899184852239,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0,0,0.605429710579726,0.576175924479999,0,0,0,0.298897361103602,0,0.161872944368132,0.140450806702248,0.408308342509787,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0.150238058906597,0,0,0.213557388818567,0.211931901159562,0.600182192168805,0.206105058476878,0,0,0,0.0974370051611986,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0.365921118388786,0.795178609928912,0.464775771478074,0.207322110030741,0.756962552626885,1.45990943630332,1.56449532329816,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.100528972411631,0,0,0,1.44331342025273,0.695582429850461,0.587043471179108,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0,0,0,1.47798971368783,0,1.03664057770386,0.432359860250884,0.25248486685276,0,0,0,0,0,0.300343057843917,0,0.560655421726804,0.43596006883328,1.6134422880609,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.479249710983165,0,0,0.144781306667579,0.410952645100767,0.537182889719687,0,0.197030760201927,0.215627574859517,0,0.508189248444927,0,0,0,1.27587750330633,0,0,0,2.94459580125936,1.00034104211935,1.08506009479894,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0.30239029332968,0,0,0,0,0,0.160853921143607,0,0,0,0.657017248110473,0.519254429183621,0.232420756919918,0.120859449591622,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.495056999523528,0,0,0,0,0.154048617114644,0,0.413509717453592,0.537101224341368,0.290033387828457,0.0852266274161009,0.178064071293475,0,0,0.127612712494584,0,0,0,0,0,0,0,0.18532421910392,0,0.744316738719335,1.58189712359363,0.38126038784765,0,0,0,0,0.359744915166629,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70918513803957,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0.635020748171649,0,0.280797178113459,0,0,0,0.677167111206413,0,0.201799707191048,0,0,0,0.223676107892416,0.166849141711909,0.19538809540204,0.835218521685727,0,0.811367035427949,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0.333926115068718,0.329607748453519,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.583209226766509,0,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0.156980256395025,0.332423363800313,0.225595660617181,0.392125068635479,0.335643173951685,0.569261198172555,0.158936578980379,0,0,0.141353071433941,0,0,0.0884575645033392,0.611030144933625,0,0,0.104421949505455,0.067401132980677,0,0,0.182454789215666,0.19566461893209,0.485560759068186,0,0,0,0.126373159256976,0.60129367765797,0.207376382794494,0,0.330991955875499,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0,0.19351266257817,0.0730893170861856,0,0.0969890164884194,0.176512253383001,0,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0.229073192331831,0.171594997861965,0,0.372757606696298,0,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,1.60753148465019,1.37539436597234,2.49264202817511,0.449947783103001,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0.511164065356265,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,0.122026264901963,0,0,0.110929051536852,0,0.553394539744923,0,0.151649117541648,0,0,0,0.144921028610825,0.298509605773748,0.233713309847224,0,0,0.50313580350515,0,0,0.302461847526478,0.15543720058278,0.147855149989634,0.159296767163702,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0.464033759878494,0,0,0,0.336749488765919,0,0.192619830407303,0,0,0,0,0.244736704506468,0.71635536432595,0,0,0,0.38582807654183,0.168942440653073,0.512483037175893,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0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| ||
|short_description=p4@NUP54 | |||
}} | }} |
Latest revision as of 17:25, 18 September 2015
Short description: | p4@NUP54 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NUP54_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_ENST00000506098_5end |
EntrezGene: | NUP54 |
HGNC: | 17359 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 2.01e-23 | 3 |
neuron | 7.43e-21 | 6 |
neuroblast | 7.43e-21 | 6 |
electrically signaling cell | 7.43e-21 | 6 |
annulus pulposus cell | 4.91e-17 | 2 |
neuronal stem cell | 1.05e-15 | 8 |
ciliated cell | 6.01e-11 | 3 |
ciliated epithelial cell | 6.01e-11 | 3 |
multi-ciliated epithelial cell | 6.01e-11 | 3 |
non-pigmented ciliary epithelial cell | 6.01e-11 | 3 |
mast cell | 6.00e-07 | 5 |
basophil mast progenitor cell | 6.00e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.24e-38 | 5 |
symphysis | 1.24e-38 | 5 |
nonsynovial joint | 1.24e-38 | 5 |
fibrous joint | 1.24e-38 | 5 |
cartilaginous joint | 1.24e-38 | 5 |
developing mesenchymal condensation | 1.24e-38 | 5 |
pre-cartilage condensation | 1.24e-38 | 5 |
cartilaginous condensation | 1.24e-38 | 5 |
cartilage element | 1.24e-38 | 5 |
post-cranial axial skeletal system | 1.24e-38 | 5 |
vertebral column | 1.24e-38 | 5 |
intervertebral disk | 1.24e-38 | 5 |
intervertebral joint | 1.24e-38 | 5 |
articulation | 3.86e-24 | 8 |
skeletal joint | 3.86e-24 | 8 |
articular system | 3.86e-24 | 8 |
nucleus pulposus | 2.01e-23 | 3 |
axial mesoderm | 2.01e-23 | 3 |
notochord | 2.01e-23 | 3 |
chordamesoderm | 2.01e-23 | 3 |
annulus fibrosus | 4.91e-17 | 2 |
fibrocartilage | 4.91e-17 | 2 |
annulus fibrosus disci intervertebralis | 4.91e-17 | 2 |
subdivision of skeletal system | 5.19e-12 | 16 |
cartilage tissue | 1.15e-11 | 3 |
skeletal tissue | 1.15e-11 | 3 |
ciliary epithelium | 6.01e-11 | 3 |
ciliary body | 6.01e-11 | 3 |
atypical epithelium | 1.98e-08 | 4 |
vasculature of organ | 9.56e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.20e-08 | 22 |
germ cell cancer | 1.20e-08 | 22 |