FFCP PHASE1:Hg19::chr4:41750731..41750748,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:41750731..41750748,-
|short_description=p1@PHOX2B
|description=CAGE_peak_1_at_PHOX2B_5end
|association_with_transcript=238bp_to_ENST00000226382,NM_003924,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8929 | |EntrezGene=8929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9143 | |HGNC=9143 | ||
|TSSclassifier=strong | |||
|UniProt=Q99453 | |UniProt=Q99453 | ||
|association_with_transcript=238bp_to_ENST00000226382,NM_003924,uc003gwf.3_5end | |||
|cluster_id=chr4:41750731..41750748,- | |||
|coexpression_cluster_id=C1368 | |||
|description=CAGE_peak_1_at_PHOX2B_5end | |||
|id=chr4:41750731..41750748,- | |||
|ontology_enrichment_celltype=CL:0002322!5.33e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000333;6.79e-35;5!CL:0002321;8.74e-18;15 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!2.02e-12!6;DOID:171!1.91e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:169;3.82e-29;6!DOID:171;1.29e-17;10!DOID:3095;4.09e-08;22!DOID:2994;4.09e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,3.96e-29,6;DOID:171,1.32e-17,10;DOID:3095,4.13e-08,22;DOID:2994,4.13e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0002298!5.62e-19!8;UBERON:0003076!8.87e-17!15;UBERON:0003057!8.87e-17!15;UBERON:0004733!1.80e-16!12;UBERON:0002028!1.80e-16!12;UBERON:0007277!1.80e-16!12;UBERON:0004732!3.97e-15!13;UBERON:0000013!6.70e-15!5;UBERON:0002410!6.70e-15!5;UBERON:0001896!9.55e-14!3;UBERON:0005290!9.55e-14!3;UBERON:0010096!9.55e-14!3;UBERON:0000988!1.59e-13!3;UBERON:0002148!6.76e-10!2;UBERON:0009662!6.76e-10!2;UBERON:0000160!1.18e-08!27;UBERON:0000073!1.22e-08!94;UBERON:0001016!1.22e-08!94;UBERON:0007023!2.11e-08!115;UBERON:0000010!2.81e-08!8;UBERON:0005409!3.69e-08!35;UBERON:0002680!1.42e-07!9;UBERON:0001895!1.42e-07!9;UBERON:0010092!1.42e-07!9;UBERON:0006331!7.46e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;5.97e-43;6!UBERON:0000013;6.79e-35;5!UBERON:0002410;6.79e-35;5!UBERON:0001896;2.35e-31;3!UBERON:0005290;2.35e-31;3!UBERON:0002148;5.41e-22;2!UBERON:0006331;5.41e-22;2!UBERON:0009662;5.41e-22;2!UBERON:0004733;1.62e-21;12!UBERON:0002028;1.62e-21;12!UBERON:0004732;7.31e-20;13!UBERON:0000010;1.53e-19;8!UBERON:0002108;2.71e-19;4!UBERON:0005409;5.14e-16;22!UBERON:0000988;5.30e-15;3!UBERON:0000160;1.61e-14;17!UBERON:0004921;3.83e-10;33!UBERON:0000922;9.31e-09;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,4.79e-43,6;UBERON:0000013,7.09e-35,5;UBERON:0002410,7.09e-35,5;UBERON:0001896,1.80e-31,3;UBERON:0005290,1.80e-31,3;UBERON:0010096,1.80e-31,3;UBERON:0002148,5.41e-22,2;UBERON:0006331,5.41e-22,2;UBERON:0009662,5.41e-22,2;UBERON:0004733,1.46e-21,12;UBERON:0002028,1.46e-21,12;UBERON:0007277,1.46e-21,12;UBERON:0004732,6.62e-20,13;UBERON:0000010,1.57e-19,8;UBERON:0002108,2.98e-19,4;UBERON:0003076,2.99e-17,15;UBERON:0003057,2.99e-17,15;UBERON:0000988,5.30e-15,3;UBERON:0000160,1.66e-14,17;UBERON:0005409,4.06e-14,25;UBERON:0011216,4.77e-11,223;UBERON:0001016,4.10e-10,89 | |||
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| ||
|short_description=p1@PHOX2B | |||
}} | }} |
Latest revision as of 19:52, 17 September 2015
Short description: | p1@PHOX2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PHOX2B_5end |
Coexpression cluster: | C1368_neuroblastoma_rectum_small_colon_locus_duodenum_temporal |
Association with transcript: | 238bp_to_ENST00000226382, NM_003924, uc003gwf.3_5end |
EntrezGene: | PHOX2B |
HGNC: | 9143 |
UniProt: | Q99453 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 4.79e-43 | 6 |
sympathetic nervous system | 7.09e-35 | 5 |
autonomic nervous system | 7.09e-35 | 5 |
medulla oblongata | 1.80e-31 | 3 |
myelencephalon | 1.80e-31 | 3 |
future myelencephalon | 1.80e-31 | 3 |
locus ceruleus | 5.41e-22 | 2 |
brainstem nucleus | 5.41e-22 | 2 |
hindbrain nucleus | 5.41e-22 | 2 |
segmental subdivision of hindbrain | 1.46e-21 | 12 |
hindbrain | 1.46e-21 | 12 |
presumptive hindbrain | 1.46e-21 | 12 |
segmental subdivision of nervous system | 6.62e-20 | 13 |
peripheral nervous system | 1.57e-19 | 8 |
small intestine | 2.98e-19 | 4 |
posterior neural tube | 2.99e-17 | 15 |
chordal neural plate | 2.99e-17 | 15 |
pons | 5.30e-15 | 3 |
intestine | 1.66e-14 | 17 |
gastrointestinal system | 4.06e-14 | 25 |
organ system subdivision | 4.77e-11 | 223 |
nervous system | 4.10e-10 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 3.96e-29 | 6 |
neuroectodermal tumor | 1.32e-17 | 10 |
germ cell and embryonal cancer | 4.13e-08 | 22 |
germ cell cancer | 4.13e-08 | 22 |