FFCP PHASE1:Hg19::chr4:114900126..114900138,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:114900126..114900138,-
|short_description=p19@ARSJ
|description=CAGE_peak_19_at_ARSJ_5end
|association_with_transcript=13bp_to_ENST00000541197_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79642 | |EntrezGene=79642 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26286 | |HGNC=26286 | ||
|TSSclassifier=strong | |||
|UniProt=Q1HA39 | |UniProt=Q1HA39 | ||
|association_with_transcript=13bp_to_ENST00000541197_5end | |||
|cluster_id=chr4:114900126..114900138,- | |||
|description=CAGE_peak_19_at_ARSJ_5end | |||
|id=chr4:114900126..114900138,- | |||
|ontology_enrichment_celltype=CL:0000055!8.29e-16!180;CL:0000222!1.16e-11!119;CL:0000192!3.20e-10!42;CL:0000514!3.20e-10!42;CL:0000071!1.35e-09!18;CL:0002546!1.35e-09!18;CL:0002139!1.80e-09!24;CL:1000413!4.80e-09!9;CL:0000359!5.11e-09!32;CL:0002371!3.16e-08!591;CL:0000680!6.10e-08!57;CL:0000056!6.10e-08!57;CL:0000355!6.10e-08!57;CL:0000187!1.27e-07!54;CL:0000115!1.50e-07!35;CL:0000057!1.58e-07!75;CL:0000183!2.54e-07!59;CL:0000393!2.97e-07!60;CL:0000211!2.97e-07!60;CL:0002078!5.43e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002569;2.08e-11;6!CL:0002589;6.93e-09;2!CL:0000349;5.54e-08;19!CL:0000359;1.55e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,2.13e-11,6;CL:0002589,5.49e-09,2;CL:0000349,5.74e-08,19;CL:0000359,5.80e-08,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;8.85e-17;1!DOID:3451;4.70e-09;2!DOID:4159;4.70e-09;2!DOID:0060122;4.70e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,8.86e-17,1;DOID:3451,4.70e-09,2;DOID:4159,4.70e-09,2;DOID:0060122,4.70e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001637!6.09e-15!42;UBERON:0003509!6.09e-15!42;UBERON:0004572!6.09e-15!42;UBERON:0001981!5.74e-14!60;UBERON:0007500!5.74e-14!60;UBERON:0004537!5.74e-14!60;UBERON:0006965!5.74e-14!60;UBERON:0002049!1.37e-13!79;UBERON:0007798!1.37e-13!79;UBERON:0000055!2.12e-13!69;UBERON:0004872!3.28e-12!84;UBERON:0004535!3.41e-10!110;UBERON:0001009!1.15e-09!113;UBERON:0001986!1.35e-09!18;UBERON:0004638!1.35e-09!18;UBERON:0004852!1.35e-09!18;UBERON:0003914!2.07e-09!118;UBERON:0003915!4.80e-09!9;UBERON:0004700!4.80e-09!9;UBERON:0001917!4.80e-09!9;UBERON:0000490!5.56e-09!138;UBERON:0004573!9.04e-09!33;UBERON:0004571!9.04e-09!33;UBERON:0000914!1.32e-07!83;UBERON:0002329!1.32e-07!83;UBERON:0003077!1.32e-07!83;UBERON:0003059!1.32e-07!83;UBERON:0007282!1.32e-07!83;UBERON:0009618!1.32e-07!83;UBERON:0007285!1.32e-07!83;UBERON:0006914!2.31e-07!25;UBERON:0000487!2.35e-07!22;UBERON:0000477!3.45e-07!286;UBERON:0001134!4.61e-07!61;UBERON:0002036!4.61e-07!61;UBERON:0003082!4.61e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;8.85e-17;1!UBERON:0003422;2.08e-11;6!UBERON:0003104;6.55e-10;7!UBERON:0009142;6.55e-10;7!UBERON:0001529;6.93e-09;2!UBERON:0007204;6.93e-09;2!UBERON:0002331;3.38e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,7.57e-17,1;UBERON:0003422,2.13e-11,6;UBERON:0001529,5.49e-09,2;UBERON:0007204,5.49e-09,2;UBERON:0002331,3.44e-07,10;UBERON:0000358,3.44e-07,10;UBERON:0000307,3.44e-07,10;UBERON:0000091,3.44e-07,10;UBERON:0000087,3.44e-07,10;UBERON:0007010,3.44e-07,10;UBERON:0007806,3.44e-07,10;UBERON:0008780,3.44e-07,10;UBERON:0005728,3.44e-07,10 | |||
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| ||
|short_description=p19@ARSJ | |||
}} | }} |
Latest revision as of 19:44, 24 September 2015
Short description: | p19@ARSJ |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_ARSJ_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000541197_5end |
EntrezGene: | ARSJ |
HGNC: | 26286 |
UniProt: | Q1HA39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 2.13e-11 | 6 |
smooth muscle cell of the brachiocephalic vasculature | 5.49e-09 | 2 |
extraembryonic cell | 5.74e-08 | 19 |
vascular associated smooth muscle cell | 5.80e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 7.57e-17 | 1 |
mesenchyme of umbilical cord | 2.13e-11 | 6 |
brachiocephalic artery | 5.49e-09 | 2 |
brachiocephalic vasculature | 5.49e-09 | 2 |
umbilical cord | 3.44e-07 | 10 |
blastocyst | 3.44e-07 | 10 |
blastula | 3.44e-07 | 10 |
bilaminar disc | 3.44e-07 | 10 |
inner cell mass | 3.44e-07 | 10 |
cleaving embryo | 3.44e-07 | 10 |
connecting stalk | 3.44e-07 | 10 |
inner cell mass derived epiblast | 3.44e-07 | 10 |
extraembryonic mesoderm | 3.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 8.86e-17 | 1 |
skin carcinoma | 4.70e-09 | 2 |
skin cancer | 4.70e-09 | 2 |
integumentary system cancer | 4.70e-09 | 2 |