FFCP PHASE1:Mm9::chr1:158870157..158870171,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=78255 | |EntrezGene=78255 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=18 | |MCL_coexpression_id=18 | ||
|TSSclassifier=NA | |||
|UniProt=Q9ERD6,Q8C134 | |UniProt=Q9ERD6,Q8C134 | ||
|association_with_transcript=-400bp_to_ENSMUST00000027886,ENSMUST00000063199,ENSMUST00000165172,ENSMUST00000172057,NM_001159965,NM_001159967,NM_001159968,NM_023884,NR_027640,uc007dcu.2,uc007dcv.2,uc007dcw.2,uc007dcx.2,uc007dcy.2,uc007dcz.2,uc007ddb.2,uc011wuj.1_5end | |association_with_transcript=-400bp_to_ENSMUST00000027886,ENSMUST00000063199,ENSMUST00000165172,ENSMUST00000172057,NM_001159965,NM_001159967,NM_001159968,NM_023884,NR_027640,uc007dcu.2,uc007dcv.2,uc007dcw.2,uc007dcx.2,uc007dcy.2,uc007dcz.2,uc007ddb.2,uc011wuj.1_5end | ||
|cluster_id=chr1:158870157..158870171,- | |||
|description=CAGE_peak_6_at_Ralgps2_5end | |description=CAGE_peak_6_at_Ralgps2_5end | ||
|id=chr1:158870157..158870171,- | |id=chr1:158870157..158870171,- | ||
Latest revision as of 15:10, 26 September 2015
| Short description: | p6@Ralgps2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_6_at_Ralgps2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:18 |
| Association with transcript: | -400bp_to_ENSMUST00000027886, ENSMUST00000063199, ENSMUST00000165172, ENSMUST00000172057, NM_001159965, NM_001159967, NM_001159968, NM_023884, NR_027640, uc007dcu.2, uc007dcv.2, uc007dcw.2, uc007dcx.2, uc007dcy.2, uc007dcz.2, uc007ddb.2, uc011wuj.1_5end |
| EntrezGene: | Ralgps2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic lineage restricted progenitor cell | 5.79e-14 | 25 |
| mature alpha-beta T cell | 1.35e-11 | 9 |
| alpha-beta T cell | 1.35e-11 | 9 |
| immature T cell | 1.35e-11 | 9 |
| mature T cell | 1.35e-11 | 9 |
| immature alpha-beta T cell | 1.35e-11 | 9 |
| lymphoid lineage restricted progenitor cell | 2.73e-11 | 12 |
| megakaryocyte progenitor cell | 3.46e-11 | 6 |
| megakaryocyte | 3.46e-11 | 6 |
| lymphocyte | 2.57e-10 | 13 |
| common lymphoid progenitor | 2.57e-10 | 13 |
| hematopoietic cell | 2.93e-10 | 32 |
| hematopoietic oligopotent progenitor cell | 2.93e-10 | 32 |
| hematopoietic stem cell | 2.93e-10 | 32 |
| hematopoietic multipotent progenitor cell | 2.93e-10 | 32 |
| CD4-positive, alpha-beta T cell | 5.13e-10 | 8 |
| T cell | 2.64e-09 | 11 |
| pro-T cell | 2.64e-09 | 11 |
| leukocyte | 1.42e-07 | 17 |
| nongranular leukocyte | 1.42e-07 | 17 |
| connective tissue cell | 2.44e-07 | 46 |
| mesenchymal cell | 2.44e-07 | 46 |
| megakaryocyte-erythroid progenitor cell | 2.72e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| organ component layer | 8.93e-10 | 24 |
| hemolymphoid system | 1.20e-09 | 48 |
| immune system | 1.20e-09 | 48 |
| hematopoietic system | 5.08e-09 | 45 |
| blood island | 5.08e-09 | 45 |
| intestinal mucosa | 1.10e-07 | 13 |
| wall of intestine | 1.10e-07 | 13 |
| gastrointestinal system mucosa | 1.10e-07 | 13 |
| connective tissue | 2.44e-07 | 46 |
| spleen | 5.61e-07 | 6 |
| cavity lining | 5.61e-07 | 6 |
| serous membrane | 5.61e-07 | 6 |
| gastrointestinal system mesentery | 5.61e-07 | 6 |
| stomach region | 5.61e-07 | 6 |
| mesentery | 5.61e-07 | 6 |
| gastrointestinal system serosa | 5.61e-07 | 6 |
| mesentery of stomach | 5.61e-07 | 6 |
| gut mesentery | 5.61e-07 | 6 |
| dorsal mesentery | 5.61e-07 | 6 |
| dorsal mesogastrium | 5.61e-07 | 6 |
| peritoneal cavity | 5.61e-07 | 6 |
| spleen primordium | 5.61e-07 | 6 |
