FFCP PHASE1:Mm9::chr12:114667319..114667344,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=192 | |MCL_coexpression_id=192 | ||
|TSSclassifier=NA | |||
|UniProt=P01864 | |UniProt=P01864 | ||
|association_with_transcript=0bp_to_ENSMUST00000103428,uc007pgf.1,uc007pgl.1_5end | |association_with_transcript=0bp_to_ENSMUST00000103428,uc007pgf.1,uc007pgl.1_5end | ||
|cluster_id=chr12:114667319..114667344,- | |||
|description=CAGE_peak_1_at_ENSMUST00000103428_5end,CAGE_peak_1_at_uc007pgf.1_5end,CAGE_peak_1_at_uc007pgl.1_5end | |description=CAGE_peak_1_at_ENSMUST00000103428_5end,CAGE_peak_1_at_uc007pgf.1_5end,CAGE_peak_1_at_uc007pgl.1_5end | ||
|id=chr12:114667319..114667344,- | |id=chr12:114667319..114667344,- | ||
|ontology_enrichment_celltype=CL:0000553!2.57e-12!6;CL:0000556!2.57e-12!6;CL:0000050!7.14e-08!9;CL:0002031!3.00e-07!25;CL:0002027!9.54e-07!3;CL:0002006!9.54e-07!3;CL:0002024!9.54e-07!3 | |ontology_enrichment_celltype=CL:0000553!2.57e-12!6;CL:0000556!2.57e-12!6;CL:0000050!7.14e-08!9;CL:0002031!3.00e-07!25;CL:0002027!9.54e-07!3;CL:0002006!9.54e-07!3;CL:0002024!9.54e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000553,2.58e-20,6;CL:0000556,2.58e-20,6;CL:0000050,1.67e-13,9;CL:0000839,2.70e-09,13;CL:0002031,9.54e-09,25;CL:0000763,1.64e-07,16;CL:0002027,2.19e-07,3;CL:0002006,2.19e-07,3;CL:0002024,2.19e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002106!7.63e-08!6;UBERON:0004457!7.63e-08!6;UBERON:0000042!7.63e-08!6;UBERON:0004854!7.63e-08!6;UBERON:0009034!7.63e-08!6;UBERON:0002095!7.63e-08!6;UBERON:0004782!7.63e-08!6;UBERON:0003281!7.63e-08!6;UBERON:0009664!7.63e-08!6;UBERON:0002296!7.63e-08!6;UBERON:0005602!7.63e-08!6;UBERON:0001179!7.63e-08!6;UBERON:0006293!7.63e-08!6;UBERON:0002193!1.44e-07!48;UBERON:0002465!2.52e-07!3;UBERON:0002405!8.93e-07!70 | |ontology_enrichment_uberon=UBERON:0002106!7.63e-08!6;UBERON:0004457!7.63e-08!6;UBERON:0000042!7.63e-08!6;UBERON:0004854!7.63e-08!6;UBERON:0009034!7.63e-08!6;UBERON:0002095!7.63e-08!6;UBERON:0004782!7.63e-08!6;UBERON:0003281!7.63e-08!6;UBERON:0009664!7.63e-08!6;UBERON:0002296!7.63e-08!6;UBERON:0005602!7.63e-08!6;UBERON:0001179!7.63e-08!6;UBERON:0006293!7.63e-08!6;UBERON:0002193!1.44e-07!48;UBERON:0002465!2.52e-07!3;UBERON:0002405!8.93e-07!70 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002465,8.84e-16,3;UBERON:0002193,1.55e-12,48;UBERON:0002405,1.55e-12,48;UBERON:0002106,3.37e-12,6;UBERON:0004457,3.37e-12,6;UBERON:0000042,3.37e-12,6;UBERON:0004854,3.37e-12,6;UBERON:0009034,3.37e-12,6;UBERON:0002095,3.37e-12,6;UBERON:0004782,3.37e-12,6;UBERON:0003281,3.37e-12,6;UBERON:0009664,3.37e-12,6;UBERON:0002296,3.37e-12,6;UBERON:0005602,3.37e-12,6;UBERON:0001179,3.37e-12,6;UBERON:0006293,3.37e-12,6;UBERON:0001962,5.33e-11,2;UBERON:0001961,5.33e-11,2;UBERON:0001744,5.33e-11,2;UBERON:0001155,5.21e-10,2;UBERON:0000059,5.21e-10,2;UBERON:0002371,1.64e-07,16;UBERON:0001474,1.66e-07,22;UBERON:0004765,1.66e-07,22;UBERON:0001434,1.66e-07,22;UBERON:0003887,2.16e-07,10;UBERON:0002390,2.98e-07,45;UBERON:0003061,2.98e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,5.3297561890506,3.84703008040669,0.699561878128147,7.41336088591859,6.7186072466812,3.81950686618227,0.255129870453209,0.794327609607082,2.08959831311148,5.75972722056264,8.02932483735095,0,0,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,0,0,0,0,0,0,0,0,0,3.6912173332702,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,14.2415836005944,0,0,0,0,0,0,0,0,0.144599356919912,2.65383165584962,0.161766849947409,0.883366073841574,0,1.86391761218122,0,0,2.04365644166873,0,0,0,0,0,0,0,0.255715457330331,0,0,0,0.622034853050465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58670339998127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72353147925725,0.763877555344259,0,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,0,0,4.44264290074417,0,0.185194527369712,1.13021074202815,1.0935538217682,1.83022538565218,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86401793926078,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,5.3297561890506,3.84703008040669,0.699561878128147,7.41336088591859,6.7186072466812,3.81950686618227,0.255129870453209,0.794327609607082,2.08959831311148,5.75972722056264,8.02932483735095,0,0,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,0,0,0,0,0,0,0,0,0,3.6912173332702,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,14.2415836005944,0,0,0,0,0,0,0,0,0.144599356919912,2.65383165584962,0.161766849947409,0.883366073841574,0,1.86391761218122,0,0,2.04365644166873,0,0,0,0,0,0,0,0.255715457330331,0,0,0,0.622034853050465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58670339998127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72353147925725,0.763877555344259,0,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,0,0,4.44264290074417,0,0.185194527369712,1.13021074202815,1.0935538217682,1.83022538565218,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86401793926078,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | ||
|short_description=p1@ENSMUST00000103428,p1@uc007pgf.1,p1@uc007pgl.1 | |short_description=p1@ENSMUST00000103428,p1@uc007pgf.1,p1@uc007pgl.1 | ||
}} | }} |
Latest revision as of 10:07, 26 September 2015
Short description: | p1@ENSMUST00000103428, p1@uc007pgf.1, p1@uc007pgl.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000103428_5end, CAGE_peak_1_at_uc007pgf.1_5end, CAGE_peak_1_at_uc007pgl.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:192 |
Association with transcript: | 0bp_to_ENSMUST00000103428, uc007pgf.1, uc007pgl.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 2.58e-20 | 6 |
megakaryocyte | 2.58e-20 | 6 |
megakaryocyte-erythroid progenitor cell | 1.67e-13 | 9 |
myeloid lineage restricted progenitor cell | 2.70e-09 | 13 |
hematopoietic lineage restricted progenitor cell | 9.54e-09 | 25 |
myeloid cell | 1.64e-07 | 16 |
CD9-positive, CD41-positive megakaryocyte cell | 2.19e-07 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 2.19e-07 | 3 |
Kit-positive megakaryocyte progenitor cell | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoid system | 8.84e-16 | 3 |
hemolymphoid system | 1.55e-12 | 48 |
immune system | 1.55e-12 | 48 |
spleen | 3.37e-12 | 6 |
cavity lining | 3.37e-12 | 6 |
serous membrane | 3.37e-12 | 6 |
gastrointestinal system mesentery | 3.37e-12 | 6 |
stomach region | 3.37e-12 | 6 |
mesentery | 3.37e-12 | 6 |
gastrointestinal system serosa | 3.37e-12 | 6 |
mesentery of stomach | 3.37e-12 | 6 |
gut mesentery | 3.37e-12 | 6 |
dorsal mesentery | 3.37e-12 | 6 |
dorsal mesogastrium | 3.37e-12 | 6 |
peritoneal cavity | 3.37e-12 | 6 |
spleen primordium | 3.37e-12 | 6 |
gut-associated lymphoid tissue | 5.33e-11 | 2 |
mucosa-associated lymphoid tissue | 5.33e-11 | 2 |
lymphoid tissue | 5.33e-11 | 2 |
colon | 5.21e-10 | 2 |
large intestine | 5.21e-10 | 2 |
bone marrow | 1.64e-07 | 16 |
bone element | 1.66e-07 | 22 |
skeletal element | 1.66e-07 | 22 |
skeletal system | 1.66e-07 | 22 |
intraembryonic coelom | 2.16e-07 | 10 |
hematopoietic system | 2.98e-07 | 45 |
blood island | 2.98e-07 | 45 |