FFCP PHASE1:Hg19::chr2:20425445..20425460,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:20425445..20425460,-
|short_description=p11@SDC1
|description=CAGE_peak_11_at_SDC1_5end
|association_with_transcript=-251bp_to_ENST00000381150,NM_001006946...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6382 | |EntrezGene=6382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |HGNC=10658 | ||
|TSSclassifier=strong | |||
|UniProt=P18827 | |UniProt=P18827 | ||
|association_with_transcript=-251bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |||
|cluster_id=chr2:20425445..20425460,- | |||
|description=CAGE_peak_11_at_SDC1_5end | |||
|id=chr2:20425445..20425460,- | |||
|ontology_enrichment_celltype=CL:0002076!4.28e-20!43;CL:0000223!4.26e-16!59;CL:0002368!2.89e-12!13;CL:0002251!2.44e-11!21;CL:0000066!7.10e-11!254;CL:0002202!5.15e-08!9;CL:0002632!5.15e-08!9;CL:0000622!4.63e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002202;5.98e-26;9!CL:0002632;5.98e-26;9!CL:0002076;1.28e-21;42!CL:0002328;1.18e-20;3!CL:0000307;2.77e-20;3!CL:0002368;8.08e-18;13!CL:0002251;7.97e-15;20!CL:0002159;1.45e-11;14!CL:0000240;1.70e-10;6!CL:0000311;1.70e-10;6!CL:0000079;1.70e-10;6!CL:0000237;1.70e-10;6!CL:0002231;8.70e-10;3!CL:0002621;9.71e-10;3!CL:0002336;1.18e-07;1!CL:0002261;1.18e-07;1!CL:0002252;1.18e-07;1!CL:0002170;1.18e-07;1!CL:0000244;1.31e-07;4!CL:0000731;1.31e-07;4!CL:0000362;3.80e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.00e-31,42;CL:0002202,8.87e-26,9;CL:0002632,8.87e-26,9;CL:0000223,3.78e-22,58;CL:0002328,8.47e-21,3;CL:0000068,6.94e-20,3;CL:0000069,6.94e-20,3;CL:0000307,6.94e-20,3;CL:0000377,6.94e-20,3;CL:0002368,1.06e-17,13;CL:0002251,7.01e-15,20;CL:0002159,1.62e-11,14;CL:0000240,1.93e-10,6;CL:0000311,1.93e-10,6;CL:0000079,1.93e-10,6;CL:0000237,1.93e-10,6;CL:0000036,1.93e-10,6;CL:0000357,1.93e-10,6;CL:0000114,1.93e-10,6;CL:0002231,6.55e-10,3;CL:0002621,7.15e-10,3;CL:0000066,4.50e-09,253;CL:0002321,4.32e-08,250;CL:0002252,1.11e-07,1;CL:0000244,1.49e-07,4;CL:0000731,1.49e-07,4;CL:0002336,1.64e-07,1;CL:0002261,1.64e-07,1;CL:0002170,1.64e-07,1;CL:0000362,3.97e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;2.77e-20;3!CL:0000223;1.64e-12;58!CL:0000357;1.70e-10;6!CL:0000114;1.70e-10;6!UBERON:0006242;2.79e-08;1!UBERON:0009143;1.18e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;3.31e-08;1!DOID:1357;3.31e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,3.10e-08,1;DOID:1357,3.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.15e-19!169;UBERON:0000925!7.15e-19!169;UBERON:0006595!7.15e-19!169;UBERON:0001007!3.20e-15!155;UBERON:0001555!3.20e-15!155;UBERON:0007026!3.20e-15!155;UBERON:0004921!1.79e-13!129;UBERON:0004185!1.79e-13!129;UBERON:0000077!9.17e-13!130;UBERON:0000161!2.30e-10!35;UBERON:0001004!3.74e-10!72;UBERON:0005911!7.28e-10!82;UBERON:0000475!4.69e-09!365;UBERON:0005153!7.05e-09!37;UBERON:0001041!1.75e-08!98;UBERON:0003104!2.51e-08!238;UBERON:0009142!2.51e-08!238;UBERON:0005177!3.16e-08!107;UBERON:0000466!3.67e-08!126;UBERON:0005178!1.51e-07!34;UBERON:0002224!1.51e-07!34;UBERON:0002100!1.86e-07!216;UBERON:0000481!2.43e-07!347;UBERON:0005181!3.39e-07!35;UBERON:0000464!4.04e-07!104;UBERON:0000065!5.63e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.18e-20;3!UBERON:0002031;1.18e-20;3!UBERON:0007196;2.24e-15;15!UBERON:0001558;2.24e-15;15!UBERON:0002185;1.29e-12;5!UBERON:0005178;4.11e-11;34!UBERON:0002224;4.11e-11;34!UBERON:0005181;1.83e-10;35!UBERON:0001949;9.71e-10;3!UBERON:0001043;2.21e-09;3!UBERON:0000485;3.79e-09;7!UBERON:0000486;5.06e-09;12!UBERON:0003126;5.41e-09;7!UBERON:0001005;5.41e-09;7!UBERON:0000161;2.78e-08;19!UBERON:0000166;2.78e-08;19!UBERON:0001764;3.31e-08;1!UBERON:0001825;3.31e-08;1!UBERON:0003729;4.04e-08;13!UBERON:0000344;7.41e-08;20!UBERON:0000165;1.00e-07;28!UBERON:0002372;1.18e-07;1!UBERON:0001961;1.18e-07;1!UBERON:0001744;1.18e-07;1!UBERON:0001042;1.18e-07;1!UBERON:0001735;1.18e-07;1!UBERON:0001041;2.11e-07;14!UBERON:0004807;2.36e-07;22!UBERON:0005911;4.18e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,8.47e-21,3;UBERON:0002031,8.47e-21,3;UBERON:0007196,2.83e-15,15;UBERON:0001558,2.83e-15,15;UBERON:0004119,1.40e-13,160;UBERON:0000925,1.40e-13,160;UBERON:0006595,1.40e-13,160;UBERON:0002185,1.06e-12,5;UBERON:0001007,3.58e-12,145;UBERON:0001555,3.58e-12,145;UBERON:0007026,3.58e-12,145;UBERON:0003102,1.17e-11,99;UBERON:0005178,4.36e-11,34;UBERON:0002224,4.36e-11,34;UBERON:0005181,9.75e-11,35;UBERON:0001004,2.04e-10,74;UBERON:0001949,7.15e-10,3;UBERON:0001043,2.30e-09,3;UBERON:0009143,2.30e-09,3;UBERON:0003126,7.94e-09,7;UBERON:0001005,7.94e-09,7;UBERON:0001041,2.06e-08,87;UBERON:0001764,3.10e-08,1;UBERON:0001825,3.10e-08,1;UBERON:0003729,4.37e-08,13;UBERON:0000161,4.99e-08,36;UBERON:0004921,6.52e-08,118;UBERON:0000033,6.72e-08,56;UBERON:0000344,8.00e-08,20;UBERON:0005911,8.30e-08,82;UBERON:0002372,1.26e-07,1;UBERON:0001961,1.26e-07,1;UBERON:0001744,1.26e-07,1;UBERON:0001735,1.26e-07,1;UBERON:0000165,1.95e-07,29;UBERON:0000930,1.95e-07,29;UBERON:0000485,2.95e-07,9;UBERON:0000166,3.82e-07,22;UBERON:0000153,5.32e-07,62;UBERON:0007811,5.32e-07,62;UBERON:0000915,7.42e-07,52 | |||
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|short_description=p11@SDC1 | |||
}} | }} |
Latest revision as of 15:44, 19 September 2015
Short description: | p11@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -251bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 3.10e-08 | 1 |
maxillary sinus cancer | 3.10e-08 | 1 |