FFCP PHASE1:Hg19::chr2:176969124..176969155,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:176969124..176969155,+
|short_description=p5@HOXD11
|description=CAGE_peak_5_at_HOXD11_5end
|association_with_transcript=-94bp_to_uc010fqx.2_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3237 | |EntrezGene=3237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |HGNC=5134 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-94bp_to_uc010fqx.2_5end | |||
|cluster_id=chr2:176969124..176969155,+ | |||
|coexpression_cluster_id=C4148 | |||
|description=CAGE_peak_5_at_HOXD11_5end | |||
|id=chr2:176969124..176969155,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.83e-12!23;CL:1000497!3.17e-07!18;CL:0002518!3.17e-07!18;CL:1000449!7.16e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.21e-11;17!CL:0002518;3.21e-11;17!CL:0002620;1.07e-10;23!CL:1000449;1.80e-10;15!CL:1000507;4.54e-10;10!CL:1000494;4.54e-10;10!CL:0002681;3.26e-08;12!CL:0002584;3.26e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,3.91e-11,17;CL:0002518,3.91e-11,17;CL:0002620,1.05e-10,23;CL:1000449,2.19e-10,15;CL:1000507,5.82e-10,10;CL:1000494,5.82e-10,10;CL:0002681,3.75e-08,12;CL:0002584,3.75e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0006238;3.33e-07;10 | |||
|ontology_enrichment_disease=DOID:1749!2.66e-09!14;DOID:17!5.79e-08!5;DOID:450!5.79e-08!5;DOID:66!5.79e-08!5;DOID:423!5.79e-08!5;DOID:0080000!5.79e-08!5;DOID:11722!5.79e-08!5;DOID:0050687!7.04e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.18e-12;14!DOID:17;4.90e-12;5!DOID:450;4.90e-12;5!DOID:66;4.90e-12;5!DOID:423;4.90e-12;5!DOID:0080000;4.90e-12;5!DOID:11722;4.90e-12;5!DOID:3093;6.48e-09;11!DOID:171;1.78e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.03e-12,14;DOID:17,4.17e-12,5;DOID:450,4.17e-12,5;DOID:66,4.17e-12,5;DOID:423,4.17e-12,5;DOID:0080000,4.17e-12,5;DOID:11722,4.17e-12,5;DOID:3093,7.05e-09,11;DOID:171,2.02e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0001008!9.75e-15!45;UBERON:0006554!6.43e-14!44;UBERON:0003064!9.92e-11!37;UBERON:0000489!2.41e-10!32;UBERON:0002113!5.19e-09!27;UBERON:0003918!5.19e-09!27;UBERON:0005095!5.19e-09!27;UBERON:0007687!5.19e-09!27;UBERON:0000059!9.20e-08!11;UBERON:0004876!1.67e-07!20;UBERON:0001046!1.99e-07!19;UBERON:0005156!3.57e-07!59;UBERON:0000990!3.57e-07!59;UBERON:0000080!5.03e-07!18;UBERON:0002120!5.03e-07!18;UBERON:0004875!5.03e-07!18;UBERON:0005721!5.03e-07!18;UBERON:0005754!5.03e-07!18;UBERON:0007297!5.03e-07!18;UBERON:0004211!7.16e-07!16;UBERON:0001285!7.16e-07!16;UBERON:0007684!7.16e-07!16;UBERON:0003220!7.16e-07!16;UBERON:0004208!7.16e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.37e-15;30!UBERON:0001008;1.37e-15;30!UBERON:0002113;5.27e-11;24!UBERON:0011143;5.27e-11;24!UBERON:0006555;1.80e-10;15!UBERON:0004819;1.80e-10;15!UBERON:0001285;1.80e-10;15!UBERON:0007684;1.80e-10;15!UBERON:0000489;2.00e-10;29!UBERON:0004211;4.54e-10;10!UBERON:0009773;4.54e-10;10!UBERON:0001231;4.54e-10;10!UBERON:0004810;4.54e-10;10!UBERON:0001225;3.26e-08;12!UBERON:0008987;3.26e-08;12!UBERON:0000365;8.48e-08;5!UBERON:0003975;6.16e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,8.56e-14,48;UBERON:0006554,1.01e-12,47;UBERON:0004211,2.19e-10,15;UBERON:0009773,2.19e-10,15;UBERON:0001231,2.19e-10,15;UBERON:0001285,2.19e-10,15;UBERON:0007684,2.19e-10,15;UBERON:0004208,2.19e-10,15;UBERON:0004810,5.82e-10,10;UBERON:0002113,7.21e-10,26;UBERON:0003918,7.21e-10,26;UBERON:0011143,7.21e-10,26;UBERON:0005095,7.21e-10,26;UBERON:0007687,7.21e-10,26;UBERON:0006555,1.25e-09,16;UBERON:0004819,1.25e-09,16;UBERON:0000489,1.74e-09,31;UBERON:0001225,3.75e-08,12;UBERON:0008987,3.75e-08,12;UBERON:0000365,5.74e-08,5 | |||
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|short_description=p5@HOXD11 | |||
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Latest revision as of 08:39, 18 September 2015
Short description: | p5@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXD11_5end |
Coexpression cluster: | C4148_neuroectodermal_Fibroblast_neuroblastoma_glioblastoma_tridermal_rhabdomyosarcoma_kidney |
Association with transcript: | -94bp_to_uc010fqx.2_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 3.91e-11 | 17 |
kidney epithelial cell | 3.91e-11 | 17 |
skin fibroblast | 1.05e-10 | 23 |
epithelial cell of nephron | 2.19e-10 | 15 |
kidney tubule cell | 5.82e-10 | 10 |
nephron tubule epithelial cell | 5.82e-10 | 10 |
kidney cortical cell | 3.75e-08 | 12 |
renal cortical epithelial cell | 3.75e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
renal system | 8.56e-14 | 48 |
urinary system structure | 1.01e-12 | 47 |
nephron epithelium | 2.19e-10 | 15 |
renal tubule | 2.19e-10 | 15 |
nephron tubule | 2.19e-10 | 15 |
nephron | 2.19e-10 | 15 |
uriniferous tubule | 2.19e-10 | 15 |
nephrogenic mesenchyme | 2.19e-10 | 15 |
nephron tubule epithelium | 5.82e-10 | 10 |
kidney | 7.21e-10 | 26 |
kidney mesenchyme | 7.21e-10 | 26 |
upper urinary tract | 7.21e-10 | 26 |
kidney rudiment | 7.21e-10 | 26 |
kidney field | 7.21e-10 | 26 |
excretory tube | 1.25e-09 | 16 |
kidney epithelium | 1.25e-09 | 16 |
cavitated compound organ | 1.74e-09 | 31 |
cortex of kidney | 3.75e-08 | 12 |
renal parenchyma | 3.75e-08 | 12 |
urothelium | 5.74e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.03e-12 | 14 |
musculoskeletal system disease | 4.17e-12 | 5 |
myotonic disease | 4.17e-12 | 5 |
muscle tissue disease | 4.17e-12 | 5 |
myopathy | 4.17e-12 | 5 |
muscular disease | 4.17e-12 | 5 |
myotonic dystrophy | 4.17e-12 | 5 |
nervous system cancer | 7.05e-09 | 11 |
neuroectodermal tumor | 2.02e-08 | 10 |