FFCP PHASE1:Hg19::chr2:158039491..158039507,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:158039491..158039507,-
|short_description=p@chr2:158039491..158039507,-
|description=CAGE_peak_at_chr2:158039491..158039507,-
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:158039491..158039507,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr2:158039491..158039507,- | |||
|id=chr2:158039491..158039507,- | |||
|ontology_enrichment_celltype=CL:0002057!3.81e-53!42;CL:0000860!1.66e-50!45;CL:0002194!5.09e-34!63;CL:0000576!5.09e-34!63;CL:0000040!5.09e-34!63;CL:0000559!5.09e-34!63;CL:0002009!1.75e-32!65;CL:0000839!1.91e-30!70;CL:0000766!3.32e-30!76;CL:0000557!2.08e-28!71;CL:0002087!8.40e-20!119;CL:0000048!1.18e-19!430;CL:0000723!6.95e-19!436;CL:0000034!1.24e-18!444;CL:0002320!3.87e-18!365;CL:0000763!8.37e-18!112;CL:0000049!8.37e-18!112;CL:0000738!9.40e-18!140;CL:0002031!3.93e-16!124;CL:0000134!2.64e-15!358;CL:0000037!1.18e-13!172;CL:0000566!1.18e-13!172;CL:0002371!2.87e-13!591;CL:0000988!1.69e-12!182;CL:0000219!2.51e-12!390;CL:0002393!6.82e-12!9;CL:0002397!6.82e-12!9;CL:0000144!1.78e-11!625;CL:0002032!2.51e-11!165;CL:0000837!2.51e-11!165;CL:0000012!4.81e-10!682;CL:0000548!1.19e-09!679;CL:0000004!1.19e-09!679;CL:0000255!1.19e-09!679;CL:0000003!3.50e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.33e-70;33!CL:0002057;7.33e-70;33!CL:0000473;1.10e-47;39!CL:0000234;1.10e-47;39!CL:0000576;1.35e-43;48!CL:0000766;1.26e-25;69!CL:0002393;2.27e-16;6!CL:0002397;2.27e-16;6!CL:0002087;3.81e-13;104!CL:0000763;3.46e-11;100!CL:0002602;3.24e-08;2!CL:0000738;2.37e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.18e-83,42;CL:0002057,2.18e-83,42;CL:0000473,5.48e-72,48;CL:0000234,5.48e-72,48;CL:0002194,5.02e-56,59;CL:0000576,5.02e-56,59;CL:0000040,5.02e-56,59;CL:0000559,5.02e-56,59;CL:0002009,5.76e-54,61;CL:0000766,5.37e-51,72;CL:0000839,2.35e-49,66;CL:0000557,1.63e-48,67;CL:0000763,1.86e-31,108;CL:0000049,1.86e-31,108;CL:0002087,3.11e-31,115;CL:0000738,9.61e-29,136;CL:0002031,1.22e-25,120;CL:0000037,1.15e-21,168;CL:0000988,3.89e-20,177;CL:0002032,6.66e-20,161;CL:0000837,6.66e-20,161;CL:0002320,7.85e-13,361;CL:0002393,7.51e-11,9;CL:0002397,7.51e-11,9;CL:0000134,9.30e-11,354;CL:0000034,3.38e-10,441;CL:0000048,4.57e-10,427;CL:0000723,8.73e-10,433;CL:0000219,5.55e-09,386;CL:0002602,2.40e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002057;3.99e-59;42!CL:0000049;9.07e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.22e-30!80;UBERON:0001474!2.67e-27!86;UBERON:0004765!1.22e-26!101;UBERON:0001434!1.22e-26!101;UBERON:0002204!2.11e-25!167;UBERON:0002390!4.04e-24!102;UBERON:0003061!4.04e-24!102;UBERON:0002193!2.10e-20!112;UBERON:0002405!4.70e-20!115;UBERON:0003081!3.86e-18!216;UBERON:0002384!8.39e-17!375;UBERON:0000926!2.20e-10!448;UBERON:0004120!2.20e-10!448;UBERON:0006603!2.20e-10!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0006444;3.24e-08;2!UBERON:0001995;3.24e-08;2!UBERON:0004715;3.24e-08;2!UBERON:0004905;2.01e-07;8!UBERON:0000982;2.01e-07;8!UBERON:0004770;2.01e-07;8!UBERON:0011135;4.51e-07;5!UBERON:0002216;4.51e-07;5!UBERON:0011134;4.51e-07;5!UBERON:0002209;4.51e-07;5!UBERON:0002213;4.51e-07;5!UBERON:0007844;4.51e-07;5!UBERON:0011138;4.51e-07;5!UBERON:0001130;4.51e-07;5!UBERON:0001066;4.51e-07;5!UBERON:0001468;4.51e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.02e-48,76;UBERON:0004765,2.51e-47,90;UBERON:0001434,2.57e-44,100;UBERON:0001474,8.96e-44,82;UBERON:0002390,1.77e-40,98;UBERON:0003061,1.77e-40,98;UBERON:0002405,1.07e-37,93;UBERON:0002193,5.55e-36,108;UBERON:0002204,1.13e-29,167;UBERON:0003081,3.42e-20,203;UBERON:0000926,2.93e-13,315;UBERON:0004120,2.93e-13,315;UBERON:0006603,2.93e-13,315;UBERON:0002384,3.24e-12,371;UBERON:0006444,2.40e-08,2;UBERON:0001995,2.40e-08,2;UBERON:0004715,2.40e-08,2;UBERON:0004905,2.13e-07,8;UBERON:0000982,2.13e-07,8;UBERON:0004770,2.13e-07,8;UBERON:0011135,4.19e-07,5;UBERON:0002216,4.19e-07,5;UBERON:0011134,4.19e-07,5;UBERON:0002209,4.19e-07,5;UBERON:0002213,4.19e-07,5;UBERON:0005856,4.19e-07,5;UBERON:0005866,4.19e-07,5;UBERON:0005863,4.19e-07,5;UBERON:0007844,4.19e-07,5;UBERON:0011138,4.19e-07,5;UBERON:0001130,4.19e-07,5;UBERON:0001066,4.19e-07,5;UBERON:0001468,4.19e-07,5 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0.631719873426831,0.522371256399677,0,0,0,0,1.8564952944007,1.32558950291166,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.15148819429164,0.928896739896456,0,0,0.369754010166788,0,0,0.880801318004542,21.0518255242113,10.4283112684474,8.02940221648652,0,0,0,1.01778767145695,1.51150377475524,1.69808842831471,2.55671940596253,2.46700732813095,4.64559556342655,4.02769349251011,1.0246428261164,7.80391358632331,19.6505038019873,10.973239620925,23.0225027210381,0.376484679085209,0.272906150057846,5.8428105955722,38.5665704387337,27.278967301468,39.6389017995406,0.329851300186716,0.199463657621632,2.55734850319616,37.7272010217159,20.425868088881,31.1411124497787,1.00499466102697,1.5644487552606,4.12658804939722,14.5295880632009,23.5697687032041,60.4443160012089,0.633765858935825,2.12604299965044,1.67726916406701,0.673971786878971,0.750884464207532,0.964353520182481,0.570025487482497,0.59675003159727,0.365328307529268,0,0,0,0,0,0,0,0,0,1.17447437874188,0,0,4.48406850385229,0,0.393419540227666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451725357233318,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0.953962497221368,0,0.371457501329565,0,0.860234595106124,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.662045904066094,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0.413303124703062,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.113432183160021,0.538168907066586,0,0,0,0,2.06112432036503,0,0.168776332241266,0,0.757301322732344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12899064659632,0,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.336393253036082,0,0.51336800074665,0,0,0,0,0,0.257207374262142,0,0,0.714889968290738,0,0,0,0.355391948742546,1.58390374586686,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0.788123040807709,0,0.641715181398742,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0.500170521059677,1.08506009479894,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0.82707210449155,3.45142721309787,4.37582986994122,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.246381468041427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0.127612712494584,0,0,0.94443704049192,0.6970372701606,0.308033580176089,0,0.869932992075073,0.37064843820784,0,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0.421258456238981,0,0,1.05650146756755,0,0,1.13008116620243,3.30819206127675,0,0,0,2.62357900818653,0,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0,1.05553817648832,0,0,0,0,1.34060455107157,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556543525114529,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.576219191952599,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,1.51522404220071,1.0062716070103,0.889811221596536,0.686520205190771,0.907385542579434,0.310874401165561,0.295710299979268,0,0.449803112163605,0.465788870628778,0.414706207840855,0,0,0.751288044986092,0.380805212168795,0,0.545545977607678,0.107410557042488,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8863681038116,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0.631719873426831,0.522371256399677,0,0,0,0,1.8564952944007,1.32558950291166,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.15148819429164,0.928896739896456,0,0,0.369754010166788,0,0,0.880801318004542,21.0518255242113,10.4283112684474,8.02940221648652,0,0,0,1.01778767145695,1.51150377475524,1.69808842831471,2.55671940596253,2.46700732813095,4.64559556342655,4.02769349251011,1.0246428261164,7.80391358632331,19.6505038019873,10.973239620925,23.0225027210381,0.376484679085209,0.272906150057846,5.8428105955722,38.5665704387337,27.278967301468,39.6389017995406,0.329851300186716,0.199463657621632,2.55734850319616,37.7272010217159,20.425868088881,31.1411124497787,1.00499466102697,1.5644487552606,4.12658804939722,14.5295880632009,23.5697687032041,60.4443160012089,0.633765858935825,2.12604299965044,1.67726916406701,0.673971786878971,0.750884464207532,0.964353520182481,0.570025487482497,0.59675003159727,0.365328307529268,0,0,0,0,0,0,0,0,0,1.17447437874188,0,0,4.48406850385229,0,0.393419540227666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451725357233318,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0.953962497221368,0,0.371457501329565,0,0.860234595106124,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.662045904066094,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0.413303124703062,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.113432183160021,0.538168907066586,0,0,0,0,2.06112432036503,0,0.168776332241266,0,0.757301322732344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12899064659632,0,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.336393253036082,0,0.51336800074665,0,0,0,0,0,0.257207374262142,0,0,0.714889968290738,0,0,0,0.355391948742546,1.58390374586686,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0.788123040807709,0,0.641715181398742,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0.500170521059677,1.08506009479894,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0.82707210449155,3.45142721309787,4.37582986994122,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.246381468041427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0.127612712494584,0,0,0.94443704049192,0.6970372701606,0.308033580176089,0,0.869932992075073,0.37064843820784,0,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0.421258456238981,0,0,1.05650146756755,0,0,1.13008116620243,3.30819206127675,0,0,0,2.62357900818653,0,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0,1.05553817648832,0,0,0,0,1.34060455107157,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556543525114529,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.576219191952599,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,1.51522404220071,1.0062716070103,0.889811221596536,0.686520205190771,0.907385542579434,0.310874401165561,0.295710299979268,0,0.449803112163605,0.465788870628778,0.414706207840855,0,0,0.751288044986092,0.380805212168795,0,0.545545977607678,0.107410557042488,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8863681038116,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p@chr2:158039491..158039507,- | |||
}} | }} |
Latest revision as of 01:38, 29 July 2015
Short description: | p@chr2:158039491..158039507, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:158039491..158039507, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.02e-48 | 76 |
skeletal element | 2.51e-47 | 90 |
skeletal system | 2.57e-44 | 100 |
bone element | 8.96e-44 | 82 |
hematopoietic system | 1.77e-40 | 98 |
blood island | 1.77e-40 | 98 |
immune system | 1.07e-37 | 93 |
hemolymphoid system | 5.55e-36 | 108 |
musculoskeletal system | 1.13e-29 | 167 |
lateral plate mesoderm | 3.42e-20 | 203 |
mesoderm | 2.93e-13 | 315 |
mesoderm-derived structure | 2.93e-13 | 315 |
presumptive mesoderm | 2.93e-13 | 315 |
connective tissue | 3.24e-12 | 371 |
annulus fibrosus | 2.40e-08 | 2 |
fibrocartilage | 2.40e-08 | 2 |
annulus fibrosus disci intervertebralis | 2.40e-08 | 2 |
articulation | 2.13e-07 | 8 |
skeletal joint | 2.13e-07 | 8 |
articular system | 2.13e-07 | 8 |
intervertebral cartilage | 4.19e-07 | 5 |
symphysis | 4.19e-07 | 5 |
nonsynovial joint | 4.19e-07 | 5 |
fibrous joint | 4.19e-07 | 5 |
cartilaginous joint | 4.19e-07 | 5 |
developing mesenchymal condensation | 4.19e-07 | 5 |
pre-cartilage condensation | 4.19e-07 | 5 |
cartilaginous condensation | 4.19e-07 | 5 |
cartilage element | 4.19e-07 | 5 |
post-cranial axial skeletal system | 4.19e-07 | 5 |
vertebral column | 4.19e-07 | 5 |
intervertebral disk | 4.19e-07 | 5 |
intervertebral joint | 4.19e-07 | 5 |