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{{Coexpression_clusters
{
|full_id=C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma
|

Latest revision as of 10:23, 17 September 2013


Full id: C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma



Phase1 CAGE Peaks

Hg19::chr10:104161779..104161825,+p@chr10:104161779..104161825
+
Hg19::chr10:118463443..118463444,+p@chr10:118463443..118463444
+
Hg19::chr10:125623630..125623648,-p@chr10:125623630..125623648
-
Hg19::chr10:125623682..125623706,-p@chr10:125623682..125623706
-
Hg19::chr10:131344593..131344605,+p@chr10:131344593..131344605
+
Hg19::chr10:131488786..131488807,+p@chr10:131488786..131488807
+
Hg19::chr10:134227398..134227410,+p@chr10:134227398..134227410
+
Hg19::chr10:3668321..3668343,-p@chr10:3668321..3668343
-
Hg19::chr10:50818183..50818194,-p@chr10:50818183..50818194
-
Hg19::chr10:9060826..9060835,-p@chr10:9060826..9060835
-
Hg19::chr10:9060848..9060862,-p@chr10:9060848..9060862
-
Hg19::chr10:9060881..9060893,-p@chr10:9060881..9060893
-
Hg19::chr11:111794915..111794928,+p6@C11orf52
Hg19::chr11:111794952..111794962,+p8@C11orf52
Hg19::chr11:119994605..119994622,-p5@TRIM29
Hg19::chr11:126237268..126237276,+p@chr11:126237268..126237276
+
Hg19::chr11:1946293..1946319,+p11@TNNT3
Hg19::chr11:1949070..1949079,+p@chr11:1949070..1949079
+
Hg19::chr11:1949831..1949837,+p@chr11:1949831..1949837
+
Hg19::chr11:1949886..1949907,+p@chr11:1949886..1949907
+
Hg19::chr11:1949928..1949937,+p@chr11:1949928..1949937
+
Hg19::chr11:1950008..1950019,+p@chr11:1950008..1950019
+
Hg19::chr11:1973029..1973054,+p@chr11:1973029..1973054
+
Hg19::chr11:2016402..2016414,+p2@RPSA
Hg19::chr11:2016477..2016504,-p4@BC106079
Hg19::chr11:2016588..2016600,-p6@BC106079
Hg19::chr11:2019065..2019078,-p2@H19
Hg19::chr11:21419826..21419837,-p@chr11:21419826..21419837
-
Hg19::chr11:2150347..2150380,+p3@BC104421
Hg19::chr11:2798772..2798822,+p3@KCNQ1
Hg19::chr11:5626359..5626406,+p8@TRIM6
Hg19::chr11:63330814..63330827,-p2@HRASLS2
Hg19::chr11:63330842..63330859,-p1@HRASLS2
Hg19::chr11:75921800..75921806,-p1@WNT11
Hg19::chr12:108238355..108238361,+p@chr12:108238355..108238361
+
Hg19::chr12:133149098..133149122,+p15@FBRSL1
Hg19::chr12:14967095..14967123,-p1@C12orf69
Hg19::chr12:14996355..14996441,-p1@ART4
Hg19::chr12:14996451..14996472,-p2@ART4
Hg19::chr12:14996486..14996500,-p3@ART4
Hg19::chr12:50643664..50643679,-p23@LIMA1
Hg19::chr12:50643695..50643708,-p11@LIMA1
Hg19::chr12:50643712..50643724,-p17@LIMA1
Hg19::chr12:52882275..52882287,-p@chr12:52882275..52882287
-
Hg19::chr12:52884676..52884706,-p13@KRT6A
Hg19::chr12:56912838..56912839,+p@chr12:56912838..56912839
+
Hg19::chr12:8975144..8975169,+p2@A2ML1
Hg19::chr13:114542805..114542816,-p@chr13:114542805..114542816
-
Hg19::chr13:41935939..41935949,+p9@NAA16
Hg19::chr13:43636277..43636292,+p@chr13:43636277..43636292
+
Hg19::chr13:43636294..43636306,+p@chr13:43636294..43636306
+
Hg19::chr13:43636307..43636322,+p@chr13:43636307..43636322
+
Hg19::chr13:43636336..43636347,+p@chr13:43636336..43636347
+
Hg19::chr13:43636356..43636378,+p@chr13:43636356..43636378
+
Hg19::chr13:68765236..68765243,+p@chr13:68765236..68765243
+
Hg19::chr13:76334660..76334671,+p23@LMO7
Hg19::chr13:76334680..76334689,+p36@LMO7
Hg19::chr13:76334693..76334717,+p8@LMO7
Hg19::chr13:76334722..76334764,+p6@LMO7
Hg19::chr13:76334766..76334785,+p10@LMO7
Hg19::chr13:78109818..78109850,+p1@SCEL
Hg19::chr13:78184183..78184187,+p@chr13:78184183..78184187
+
Hg19::chr14:24729194..24729195,-p32@TGM1
Hg19::chr14:24729251..24729267,-p9@TGM1
Hg19::chr14:44016947..44016965,-p@chr14:44016947..44016965
-
Hg19::chr14:61995499..61995522,+p2@ENST00000556347
Hg19::chr14:62063872..62063902,-p@chr14:62063872..62063902
-
Hg19::chr14:64559863..64559877,+p@chr14:64559863..64559877
+
Hg19::chr14:64559897..64559910,+p@chr14:64559897..64559910
+
Hg19::chr14:64559917..64559954,+p@chr14:64559917..64559954
+
Hg19::chr14:75735999..75736014,-p1@ENST00000553510
Hg19::chr14:89883174..89883177,+p@chr14:89883174..89883177
+
Hg19::chr15:52121893..52121929,+p2@TMOD3
Hg19::chr15:68344995..68345013,+p@chr15:68344995..68345013
+
Hg19::chr15:78280795..78280834,+p@chr15:78280795..78280834
+
Hg19::chr16:61723408..61723409,+p@chr16:61723408..61723409
+
Hg19::chr16:67427389..67427408,-p1@TPPP3
Hg19::chr16:75845678..75845682,+p@chr16:75845678..75845682
+
Hg19::chr16:810728..810749,+p2@MSLN
Hg19::chr16:810842..810849,+p13@MSLN
Hg19::chr16:810882..810893,+p7@MSLN
Hg19::chr16:810919..810935,+p4@MSLN
Hg19::chr16:810945..810956,+p8@MSLN
Hg19::chr16:810991..810994,+p11@MSLN
Hg19::chr16:811041..811057,+p3@MSLN
Hg19::chr16:811064..811071,+p6@MSLN
Hg19::chr16:811073..811139,+p1@MSLN
Hg19::chr16:812227..812239,+p10@MSLN
Hg19::chr16:812453..812461,+p20@MSLN
Hg19::chr16:812506..812518,+p5@MSLN
Hg19::chr16:844123..844154,+p@chr16:844123..844154
+
Hg19::chr16:84889089..84889095,-p@chr16:84889089..84889095
-
Hg19::chr17:18281087..18281095,+p1@EVPLL
Hg19::chr17:2278441..2278454,+p13@SGSM2
Hg19::chr17:2278481..2278491,+p14@SGSM2
Hg19::chr17:38857487..38857494,-p@chr17:38857487..38857494
-
Hg19::chr17:38858136..38858142,-p@chr17:38858136..38858142
-
Hg19::chr17:38859399..38859408,-p@chr17:38859399..38859408
-
Hg19::chr17:38859418..38859423,-p@chr17:38859418..38859423
-
Hg19::chr17:38859450..38859466,-p@chr17:38859450..38859466
-
Hg19::chr17:38859468..38859474,-p@chr17:38859468..38859474
-
Hg19::chr17:38859483..38859500,-p2@KRT24
Hg19::chr17:38859520..38859529,-p3@KRT24
Hg19::chr17:38859618..38859626,-p7@KRT24
Hg19::chr17:38859632..38859640,-p8@KRT24
Hg19::chr17:38859653..38859658,-p10@KRT24
Hg19::chr17:38859668..38859679,-p4@KRT24
Hg19::chr17:38859704..38859712,-p5@KRT24
Hg19::chr17:38859741..38859749,-p6@KRT24
Hg19::chr17:38859996..38860010,-p1@KRT24
Hg19::chr17:38875358..38875392,-p1@KRT223P
Hg19::chr17:38875395..38875406,-p2@KRT223P
Hg19::chr17:48185357..48185403,+p13@PDK2
Hg19::chr17:54489919..54489960,+p@chr17:54489919..54489960
+
Hg19::chr17:63217193..63217211,+p@chr17:63217193..63217211
+
Hg19::chr17:73636134..73636150,+p5@C17orf109
Hg19::chr17:73636184..73636203,+p2@C17orf109
Hg19::chr17:73636235..73636249,+p3@C17orf109
Hg19::chr17:74049688..74049708,-p6@SRP68
Hg19::chr17:74049720..74049747,-p3@SRP68
Hg19::chr17:78682708..78682713,+p@chr17:78682708..78682713
+
Hg19::chr17:78682732..78682739,+p@chr17:78682732..78682739
+
Hg19::chr17:78682759..78682766,+p@chr17:78682759..78682766
+
Hg19::chr17:79304150..79304190,-p1@TMEM105
Hg19::chr18:28622894..28622905,-p7@DSC3
Hg19::chr18:28622907..28622942,-p4@DSC3
Hg19::chr18:28898087..28898106,+p2@DSG1
Hg19::chr18:28898107..28898130,+p1@DSG1
Hg19::chr18:46147872..46147919,+p4@CTIF
Hg19::chr18:61442747..61442758,+p6@SERPINB7
Hg19::chr18:61442767..61442774,+p9@SERPINB7
Hg19::chr18:61442787..61442814,+p5@SERPINB7
Hg19::chr18:6286777..6286797,+p@chr18:6286777..6286797
+
Hg19::chr18:72618246..72618294,-p@chr18:72618246..72618294
-
Hg19::chr19:13955108..13955132,-p@chr19:13955108..13955132
-
Hg19::chr19:15065060..15065084,-p@chr19:15065060..15065084
-
Hg19::chr19:15065111..15065171,-p@chr19:15065111..15065171
-
Hg19::chr19:36594000..36594048,+p1@BC128417
Hg19::chr19:45848386..45848393,+p6@KLC3
Hg19::chr19:50708695..50708753,+p@chr19:50708695..50708753
+
Hg19::chr19:50708757..50708769,+p@chr19:50708757..50708769
+
Hg19::chr19:50709279..50709300,+p@chr19:50709279..50709300
+
Hg19::chr19:9047470..9047482,-p@chr19:9047470..9047482
-
Hg19::chr19:9049725..9049733,-p@chr19:9049725..9049733
-
Hg19::chr19:9057024..9057060,-p@chr19:9057024..9057060
-
Hg19::chr19:9057551..9057553,-p1@MUC16
Hg19::chr19:9060169..9060183,-p@chr19:9060169..9060183
-
Hg19::chr19:9066668..9066678,-p@chr19:9066668..9066678
-
Hg19::chr19:9067461..9067493,-p@chr19:9067461..9067493
-
Hg19::chr19:9072255..9072266,-p@chr19:9072255..9072266
-
Hg19::chr19:9073298..9073307,-p@chr19:9073298..9073307
-
Hg19::chr19:9074395..9074399,-p@chr19:9074395..9074399
-
Hg19::chr19:9074760..9074767,-p@chr19:9074760..9074767
-
Hg19::chr19:9077370..9077388,-p@chr19:9077370..9077388
-
Hg19::chr19:9077861..9077865,-p@chr19:9077861..9077865
-
Hg19::chr19:9087492..9087495,-p@chr19:9087492..9087495
-
Hg19::chr19:9121076..9121094,-p@chr19:9121076..9121094
-
Hg19::chr1:100435986..100436014,+p4@SLC35A3
Hg19::chr1:100436065..100436078,+p5@SLC35A3
Hg19::chr1:100436120..100436134,+p6@SLC35A3
Hg19::chr1:116151642..116151644,+p@chr1:116151642..116151644
+
Hg19::chr1:151009035..151009050,+p2@BNIPL
Hg19::chr1:1567372..1567385,+p9@MMP23B
Hg19::chr1:202936357..202936392,-p1@CYB5R1
Hg19::chr1:204257417..204257469,-p@chr1:204257417..204257469
-
Hg19::chr1:248612526..248612531,+p@chr1:248612526..248612531
+
Hg19::chr1:43534539..43534544,+p@chr1:43534539..43534544
+
Hg19::chr1:43537118..43537143,+p@chr1:43537118..43537143
+
Hg19::chr20:16643520..16643522,+p@chr20:16643520..16643522
+
Hg19::chr20:42817571..42817591,-p@chr20:42817571..42817591
-
Hg19::chr20:51740243..51740246,+p@chr20:51740243..51740246
+
Hg19::chr20:61287795..61287809,+p4@SLCO4A1
Hg19::chr21:39607434..39607458,+p@chr21:39607434..39607458
+
Hg19::chr2:150017284..150017314,+p@chr2:150017284..150017314
+
Hg19::chr2:16243185..16243186,-p@chr2:16243185..16243186
-
Hg19::chr2:174983006..174983046,-p@chr2:174983006..174983046
-
Hg19::chr2:28853443..28853454,+p8@PLB1
Hg19::chr2:28853455..28853476,+p@chr2:28853455..28853476
+
Hg19::chr2:72375473..72375477,-p3@CYP26B1
Hg19::chr3:118892362..118892373,+p2@UPK1B
Hg19::chr3:118892394..118892403,+p3@UPK1B
Hg19::chr3:118892411..118892453,+p1@UPK1B
Hg19::chr3:118906737..118906751,+p@chr3:118906737..118906751
+
Hg19::chr3:118917948..118917952,+p@chr3:118917948..118917952
+
Hg19::chr3:123512732..123512741,-p74@MYLK
Hg19::chr3:132601146..132601156,-p@chr3:132601146..132601156
-
Hg19::chr3:174581572..174581585,+p6@NAALADL2
Hg19::chr3:174581600..174581648,+p5@NAALADL2
Hg19::chr3:188889706..188889735,+p2@TPRG1
Hg19::chr3:38032216..38032225,+p11@VILL
Hg19::chr3:56658899..56658908,-p@chr3:56658899..56658908
-
Hg19::chr4:120222077..120222102,+p@chr4:120222077..120222102
+
Hg19::chr4:143395415..143395436,-p26@INPP4B
Hg19::chr4:146704036..146704062,-p@chr4:146704036..146704062
-
Hg19::chr4:152117165..152117168,+p@chr4:152117165..152117168
+
Hg19::chr4:28216602..28216605,+p@chr4:28216602..28216605
+
Hg19::chr4:89514497..89514512,+p5@HERC3
Hg19::chr4:89514516..89514528,+p7@HERC3
Hg19::chr5:180688614..180688616,+p@chr5:180688614..180688616
+
Hg19::chr5:58489727..58489747,-p@chr5:58489727..58489747
-
Hg19::chr5:58489830..58489860,-p@chr5:58489830..58489860
-
Hg19::chr5:59573885..59573903,-p@chr5:59573885..59573903
-
Hg19::chr6:12161805..12161817,+p@chr6:12161805..12161817
+
Hg19::chr6:12161831..12161855,+p@chr6:12161831..12161855
+
Hg19::chr6:143081372..143081388,-p@chr6:143081372..143081388
-
Hg19::chr6:148604511..148604542,-p1@ENST00000423268
Hg19::chr6:1961197..1961206,-p15@GMDS
Hg19::chr6:24877326..24877328,-p35@FAM65B
Hg19::chr6:24877453..24877462,-p14@FAM65B
Hg19::chr6:24877490..24877505,-p9@FAM65B
Hg19::chr6:31083672..31083681,-p@chr6:31083672..31083681
-
Hg19::chr6:31083704..31083721,-p@chr6:31083704..31083721
-
Hg19::chr6:31083723..31083738,-p@chr6:31083723..31083738
-
Hg19::chr6:31083761..31083775,-p@chr6:31083761..31083775
-
Hg19::chr6:31083817..31083824,-p@chr6:31083817..31083824
-
Hg19::chr6:31083839..31083849,-p@chr6:31083839..31083849
-
Hg19::chr6:31083856..31083866,-p@chr6:31083856..31083866
-
Hg19::chr6:31084453..31084463,-p@chr6:31084453..31084463
-
Hg19::chr6:31084485..31084501,-p@chr6:31084485..31084501
-
Hg19::chr6:31085053..31085062,-p@chr6:31085053..31085062
-
Hg19::chr6:31085259..31085266,+p@chr6:31085259..31085266
+
Hg19::chr6:31088214..31088228,-p1@CDSN
Hg19::chr6:31686918..31686929,-p@chr6:31686918..31686929
-
Hg19::chr6:31686994..31687003,-p@chr6:31686994..31687003
-
Hg19::chr6:31687022..31687031,-p@chr6:31687022..31687031
-
Hg19::chr6:31687064..31687074,-p@chr6:31687064..31687074
-
Hg19::chr6:31688114..31688125,-p@chr6:31688114..31688125
-
Hg19::chr6:31688132..31688166,-p@chr6:31688132..31688166
-
Hg19::chr6:31689515..31689539,-p1@LY6G6C
Hg19::chr6:31697017..31697028,-p16@DDAH2
Hg19::chr6:32077019..32077030,-p4@TNXB
Hg19::chr6:32078154..32078167,-p@chr6:32078154..32078167
-
Hg19::chr6:56607138..56607143,-p@chr6:56607138..56607143
-
Hg19::chr6:56607178..56607207,-p@chr6:56607178..56607207
-
Hg19::chr6:56607215..56607225,-p@chr6:56607215..56607225
-
Hg19::chr6:56607229..56607240,-p@chr6:56607229..56607240
-
Hg19::chr7:100660540..100660573,+p1@MUC12
Hg19::chr7:116859072..116859089,+p8@ST7
Hg19::chr7:29152509..29152558,-p3@CPVL
Hg19::chr7:44264901..44264942,-p@chr7:44264901..44264942
-
Hg19::chr7:44265492..44265523,-p3@CAMK2B
Hg19::chr7:46385081..46385087,+p@chr7:46385081..46385087
+
Hg19::chr7:46608875..46608912,+p@chr7:46608875..46608912
+
Hg19::chr7:7310870..7310881,+p3@ENST00000447039
Hg19::chr7:7310907..7310916,+p4@ENST00000447039
Hg19::chr7:7310935..7310949,+p2@ENST00000447039
Hg19::chr7:7311029..7311044,+p1@ENST00000447039
Hg19::chr7:871641..871677,+p3@SUN1
Hg19::chr9:117665394..117665419,+p@chr9:117665394..117665419
+
Hg19::chr9:34233917..34233922,+p@chr9:34233917..34233922
+
Hg19::chr9:43725488..43725489,+p@chr9:43725488..43725489
+
Hg19::chr9:92033169..92033215,-p3@SEMA4D
Hg19::chr9:92049035..92049042,+p@chr9:92049035..92049042
+
Hg19::chr9:92058365..92058396,-p@chr9:92058365..92058396
-
Hg19::chrX:104568883..104568906,+p@chrX:104568883..104568906
+
Hg19::chrX:21444376..21444380,+p@chrX:21444376..21444380
+
Hg19::chrX:21444387..21444409,+p@chrX:21444387..21444409
+
Hg19::chrX:48374277..48374289,+p@chrX:48374277..48374289
+
Hg19::chrX:80518145..80518157,+p@chrX:80518145..80518157
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001533cornified envelope0.00129701549136975
GO:0022610biological adhesion0.00129701549136975
GO:0007155cell adhesion0.00129701549136975
GO:0030216keratinocyte differentiation0.00147525618609471
GO:0005856cytoskeleton0.00267588150295275
GO:0007398ectoderm development0.00516874682700244
GO:0030057desmosome0.00703665581281274
GO:0005911intercellular junction0.00748042826855757
GO:0009225nucleotide-sugar metabolic process0.0110276536242873
GO:0030054cell junction0.0171064449733669
GO:0005523tropomyosin binding0.0171064449733669
GO:0048856anatomical structure development0.0171064449733669
GO:0005515protein binding0.0171064449733669
GO:0030835negative regulation of actin filament depolymerization0.0171064449733669
GO:0030834regulation of actin filament depolymerization0.0171064449733669
GO:0030042actin filament depolymerization0.0171064449733669
GO:0006525arginine metabolic process0.017509990297827
GO:0043228non-membrane-bound organelle0.017509990297827
GO:0043232intracellular non-membrane-bound organelle0.017509990297827
GO:0015629actin cytoskeleton0.021290153615831
GO:0048869cellular developmental process0.021290153615831
GO:0030154cell differentiation0.021290153615831
GO:0009888tissue development0.021290153615831
GO:0008544epidermis development0.021290153615831
GO:0000051urea cycle intermediate metabolic process0.021290153615831
GO:0016337cell-cell adhesion0.0305143414631182
GO:0008064regulation of actin polymerization and/or depolymerization0.0305143414631182
GO:0044430cytoskeletal part0.0305143414631182
GO:0051261protein depolymerization0.0305143414631182
GO:0030832regulation of actin filament length0.0305143414631182
GO:0032502developmental process0.0305143414631182
GO:0014704intercalated disc0.0305143414631182
GO:0032535regulation of cellular component size0.0305143414631182
GO:0032956regulation of actin cytoskeleton organization and biogenesis0.0305143414631182
GO:0051129negative regulation of cellular component organization and biogenesis0.0305143414631182
GO:0005912adherens junction0.0305143414631182
GO:0042353fucose biosynthetic process0.0305143414631182
GO:0005055laminin receptor activity0.0305143414631182
GO:0016316phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity0.0305143414631182
GO:0015349thyroid hormone transmembrane transporter activity0.0305143414631182
GO:0016403dimethylargininase activity0.0305143414631182
GO:0048384retinoic acid receptor signaling pathway0.0305143414631182
GO:0005462UDP-N-acetylglucosamine transmembrane transporter activity0.0305143414631182
GO:0006005L-fucose biosynthetic process0.0305143414631182
GO:0015788UDP-N-acetylglucosamine transport0.0305143414631182
GO:0008446GDP-mannose 4,6-dehydratase activity0.0305143414631182
GO:0040009regulation of growth rate0.0305143414631182
GO:0046368GDP-L-fucose metabolic process0.0305143414631182
GO:0042350GDP-L-fucose biosynthetic process0.0305143414631182
GO:0042351'de novo' GDP-L-fucose biosynthetic process0.0305143414631182
GO:0043163cell envelope organization and biogenesis0.0305143414631182
GO:0033043regulation of organelle organization and biogenesis0.0305143414631182
GO:0051493regulation of cytoskeleton organization and biogenesis0.0305143414631182
GO:0008154actin polymerization and/or depolymerization0.0352339214424331
GO:0009653anatomical structure morphogenesis0.0352339214424331
GO:0019673GDP-mannose metabolic process0.0397894764815883
GO:0009226nucleotide-sugar biosynthetic process0.0397894764815883
GO:0004687myosin light chain kinase activity0.0397894764815883
GO:0005047signal recognition particle binding0.0397894764815883
GO:0048251elastic fiber assembly0.0397894764815883
GO:0030036actin cytoskeleton organization and biogenesis0.0477090583476725
GO:0004740pyruvate dehydrogenase (acetyl-transferring) kinase activity0.0497024538475879
GO:0015643toxin binding0.0497024538475879
GO:0003785actin monomer binding0.0497024538475879



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.16.08514e-06
MA0004.10.0513659
MA0006.10.00253129
MA0007.10.394577
MA0009.10.619142
MA0014.18.06797e-08
MA0017.10.457829
MA0019.10.148378
MA0024.10.343094
MA0025.10.0221126
MA0027.11.04177
MA0028.12.36128e-06
MA0029.10.122241
MA0030.10.0466994
MA0031.10.0233676
MA0038.10.587643
MA0040.10.402002
MA0041.10.249208
MA0042.10.0045699
MA0043.10.0365627
MA0046.10.0331447
MA0048.10.360249
MA0050.10.0107592
MA0051.10.209415
MA0052.10.0569492
MA0055.10.998305
MA0056.10
MA0057.10.17433
MA0058.10.0200162
MA0059.10.054763
MA0060.10.0157861
MA0061.11.31232
MA0063.10
MA0066.10.952343
MA0067.10.067999
MA0068.10.606023
MA0069.10.0945054
MA0070.10.086689
MA0071.10.545649
MA0072.10.183606
MA0073.10.587498
MA0074.10.00839319
MA0076.15.09613e-05
MA0077.10.0257629
MA0078.10.151474
MA0081.10.05496
MA0083.10.0388801
MA0084.10.453407
MA0087.10.523983
MA0088.10.273063
MA0089.10
MA0090.11.86506
MA0091.10.284182
MA0092.10.822963
MA0093.10.0486213
MA0095.10
MA0098.10
MA0100.10.00109344
MA0101.10.533852
MA0103.11.88255
MA0105.10.437304
MA0106.10.224752
MA0107.10.09432
MA0108.20.357833
MA0109.10
MA0111.10.697013
MA0113.11.38216
MA0114.10.192625
MA0115.10.689806
MA0116.10.234553
MA0117.10.136742
MA0119.10.130574
MA0122.10.822881
MA0124.10.592812
MA0125.10.416561
MA0130.10
MA0131.10.0218753
MA0132.10
MA0133.10
MA0135.10.00924295
MA0136.10.0252021
MA0139.10.0270142
MA0140.10.133065
MA0141.10.742115
MA0142.10.0156983
MA0143.10.385005
MA0144.10.0522447
MA0145.11.78679
MA0146.10.184232
MA0147.10.0263707
MA0148.10.624874
MA0149.10.0705239
MA0062.21.14755e-14
MA0035.20.289486
MA0039.20.874605
MA0138.20.153375
MA0002.20.407456
MA0137.20.0195671
MA0104.20.0010322
MA0047.20.567045
MA0112.21.29724
MA0065.20.5632
MA0150.10.994166
MA0151.10
MA0152.10.0897829
MA0153.10.0770925
MA0154.10.456257
MA0155.10.386979
MA0156.10.000194553
MA0157.10.357585
MA0158.10
MA0159.10.0103006
MA0160.10.228584
MA0161.10
MA0162.12.83172e-09
MA0163.10.0034828
MA0164.10.0627438
MA0080.20.000549212
MA0018.20.0434183
MA0099.21.83021
MA0079.21.58632e-14
MA0102.20.168009
MA0258.10.339853
MA0259.10.0520558
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
NR3C1#2908301.73432702677680.002458276891385540.0138352093689397



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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