FFCP PHASE1:Hg19::chr22:38368890..38368901,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr22:38368890..38368901,-
|short_description=p@chr22:38368890..38368901,-
|description=CAGE_peak_at_chr22:38368890..38368901,-
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr22:38368890..38368901,- | |||
|coexpression_cluster_id=C327 | |||
|description=CAGE_peak_at_chr22:38368890..38368901,- | |||
|id=chr22:38368890..38368901,- | |||
|ontology_enrichment_celltype=CL:0000148!2.38e-20!10;CL:0000541!2.38e-20!10;CL:0000147!4.33e-14!14;CL:0002567!3.94e-11!3;CL:0000710!2.10e-09!20 | |||
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|ontology_enrichment_celltype_v019_2=CL:0000148,2.23e-42,10;CL:0000541,2.23e-42,10;CL:0002567,2.08e-36,3;CL:0000147,3.18e-30,14;CL:0000710,4.35e-21,20;CL:0000075,1.52e-15,27;CL:0002566,4.23e-13,1;CL:0002077,2.82e-12,34;CL:0000333,1.25e-09,41 | |||
|ontology_enrichment_development_v019=UBERON:0008801;2.46e-13;1 | |||
|ontology_enrichment_disease=DOID:1909!2.07e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;2.66e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.43e-07,2 | |||
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| ||
|short_description=p@chr22:38368890..38368901,- | |||
}} | }} |
Latest revision as of 21:06, 28 July 2015
Short description: | p@chr22:38368890..38368901, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:38368890..38368901, - |
Coexpression cluster: | C327_Melanocyte_corpus_thalamus_substantia_melanoma_globus_optic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.23e-42 | 10 |
melanoblast | 2.23e-42 | 10 |
light melanocyte | 2.08e-36 | 3 |
pigment cell | 3.18e-30 | 14 |
neurecto-epithelial cell | 4.35e-21 | 20 |
columnar/cuboidal epithelial cell | 1.52e-15 | 27 |
dark melanocyte | 4.23e-13 | 1 |
ecto-epithelial cell | 2.82e-12 | 34 |
migratory neural crest cell | 1.25e-09 | 41 |
Ontology term | p-value | n |
---|---|---|
parotid gland | 2.32e-13 | 1 |
cheek | 2.32e-13 | 1 |
parotid gland primordium | 2.32e-13 | 1 |
substantia nigra | 6.06e-13 | 1 |
midbrain nucleus | 6.06e-13 | 1 |
regional part of midbrain | 6.06e-13 | 1 |
midbrain | 6.06e-13 | 1 |
presumptive midbrain | 6.06e-13 | 1 |
midbrain neural tube | 6.06e-13 | 1 |
neural nucleus | 3.41e-12 | 9 |
nucleus of brain | 3.41e-12 | 9 |
neural tube | 2.37e-09 | 56 |
neural rod | 2.37e-09 | 56 |
future spinal cord | 2.37e-09 | 56 |
neural keel | 2.37e-09 | 56 |
saliva-secreting gland | 8.91e-09 | 6 |
gland of oral region | 8.91e-09 | 6 |
gland of foregut | 8.91e-09 | 6 |
oral gland | 8.91e-09 | 6 |
oral cavity | 8.91e-09 | 6 |
brainstem | 1.31e-08 | 6 |
posterior neural tube | 1.50e-07 | 15 |
chordal neural plate | 1.50e-07 | 15 |
telencephalic nucleus | 1.52e-07 | 7 |
regional part of nervous system | 2.41e-07 | 53 |
regional part of brain | 2.41e-07 | 53 |
major salivary gland | 2.58e-07 | 2 |
midface | 2.58e-07 | 2 |
middle temporal gyrus | 3.70e-07 | 2 |
locus ceruleus | 3.93e-07 | 2 |
brainstem nucleus | 3.93e-07 | 2 |
hindbrain nucleus | 3.93e-07 | 2 |
globus pallidus | 4.42e-07 | 2 |
pallidum | 4.42e-07 | 2 |
dorsal plus ventral thalamus | 4.98e-07 | 2 |
thalamic complex | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.43e-07 | 2 |