FFCP PHASE1:Hg19::chr1:2489000..2489018,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8764 | |EntrezGene=8764 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11912 | |HGNC=11912 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-233bp_to_ENST00000466750_5end | |association_with_transcript=-233bp_to_ENST00000466750_5end | ||
|cluster_id=chr1:2489000..2489018,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_13_at_TNFRSF14_5end | |description=CAGE_peak_13_at_TNFRSF14_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000148!9.20e-22!10;CL:0000541!9.20e-22!10;CL:0000147!3.05e-15!14;CL:0002567!1.78e-14!3;CL:0000710!2.39e-10!20;CL:0002274!6.86e-08!5;CL:0000457!6.86e-08!5;CL:0002191!6.86e-08!5;CL:0000097!6.86e-08!5;CL:0000831!6.86e-08!5;CL:0002028!6.86e-08!5;CL:0000075!2.17e-07!27 | |ontology_enrichment_celltype=CL:0000148!9.20e-22!10;CL:0000541!9.20e-22!10;CL:0000147!3.05e-15!14;CL:0002567!1.78e-14!3;CL:0000710!2.39e-10!20;CL:0002274!6.86e-08!5;CL:0000457!6.86e-08!5;CL:0002191!6.86e-08!5;CL:0000097!6.86e-08!5;CL:0000831!6.86e-08!5;CL:0002028!6.86e-08!5;CL:0000075!2.17e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000148;9.58e-52;10!CL:0000147;7.94e-37;14!CL:0002567;1.08e-32;3!CL:0000710;1.28e-25;20!CL:0000075;8.01e-19;27!CL:0002077;3.63e-13;34!CL:0002566;5.33e-12;1 | |ontology_enrichment_celltype_v019=CL:0000148;9.58e-52;10!CL:0000147;7.94e-37;14!CL:0002567;1.08e-32;3!CL:0000710;1.28e-25;20!CL:0000075;8.01e-19;27!CL:0002077;3.63e-13;34!CL:0002566;5.33e-12;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,9.59e-52,10;CL:0000541,9.59e-52,10;CL:0000147,7.95e-37,14;CL:0002567,1.14e-32,3;CL:0000710,1.28e-25,20;CL:0000075,8.01e-19,27;CL:0002077,8.12e-15,34;CL:0002566,5.05e-12,1;CL:0000333,1.41e-11,41;CL:0000133,5.94e-08,59 | |||
|ontology_enrichment_development_v019=UBERON:0006242;8.19e-12;1 | |ontology_enrichment_development_v019=UBERON:0006242;8.19e-12;1 | ||
|ontology_enrichment_disease=DOID:1909!3.13e-10!2;DOID:4929!1.17e-09!2;DOID:3493!2.98e-09!2 | |ontology_enrichment_disease=DOID:1909!3.13e-10!2;DOID:4929!1.17e-09!2;DOID:3493!2.98e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.18e-22;2 | |ontology_enrichment_disease_v019=DOID:1909;2.18e-22;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,2.06e-22,2 | |||
|ontology_enrichment_uberon=UBERON:0000160!1.09e-13!27;UBERON:0005409!2.66e-12!35;UBERON:0000059!8.55e-10!11;UBERON:0001155!6.05e-08!9;UBERON:0002108!4.72e-07!14 | |ontology_enrichment_uberon=UBERON:0000160!1.09e-13!27;UBERON:0005409!2.66e-12!35;UBERON:0000059!8.55e-10!11;UBERON:0001155!6.05e-08!9;UBERON:0002108!4.72e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.54e-14;17!UBERON:0005409;3.42e-11;22!UBERON:0002108;2.91e-09;4!UBERON:0000059;4.67e-09;11!UBERON:0004921;1.03e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0000160;2.54e-14;17!UBERON:0005409;3.42e-11;22!UBERON:0002108;2.91e-09;4!UBERON:0000059;4.67e-09;11!UBERON:0004921;1.03e-07;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.34e-14,17;UBERON:0005409,6.47e-10,25;UBERON:0002108,2.80e-09,4;UBERON:0000059,4.41e-09,11 | |||
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| ||
|short_description=p13@TNFRSF14 | |short_description=p13@TNFRSF14 | ||
}} | }} |
Latest revision as of 01:09, 17 September 2015
Short description: | p13@TNFRSF14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_TNFRSF14_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -233bp_to_ENST00000466750_5end |
EntrezGene: | TNFRSF14 |
HGNC: | 11912 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 9.59e-52 | 10 |
melanoblast | 9.59e-52 | 10 |
pigment cell | 7.95e-37 | 14 |
light melanocyte | 1.14e-32 | 3 |
neurecto-epithelial cell | 1.28e-25 | 20 |
columnar/cuboidal epithelial cell | 8.01e-19 | 27 |
ecto-epithelial cell | 8.12e-15 | 34 |
dark melanocyte | 5.05e-12 | 1 |
migratory neural crest cell | 1.41e-11 | 41 |
neurectodermal cell | 5.94e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.34e-14 | 17 |
gastrointestinal system | 6.47e-10 | 25 |
small intestine | 2.80e-09 | 4 |
large intestine | 4.41e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.06e-22 | 2 |