FFCP PHASE1:Hg19::chr7:30634439..30634572,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2617 | |EntrezGene=2617 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4162 | |HGNC=4162 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCK4 | |UniProt=F8WCK4 | ||
|association_with_transcript=0bp_to_ENST00000454308,ENST00000478124_5end | |association_with_transcript=0bp_to_ENST00000454308,ENST00000478124_5end | ||
|cluster_id=chr7:30634439..30634572,+ | |||
|coexpression_cluster_id=C4683 | |coexpression_cluster_id=C4683 | ||
|description=CAGE_peak_1_at_GARS_5end | |description=CAGE_peak_1_at_GARS_5end | ||
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|ontology_enrichment_celltype=CL:0000548!2.02e-35!679;CL:0000004!2.02e-35!679;CL:0000255!2.02e-35!679;CL:0000012!2.26e-34!682;CL:0000055!5.57e-23!180;CL:0000144!2.12e-22!625;CL:0000003!3.76e-18!722;CL:0002371!2.50e-17!591;CL:0000063!5.41e-15!578;CL:0000057!1.27e-14!75;CL:0000723!1.05e-09!436;CL:0000048!2.31e-09!430;CL:0000034!2.72e-09!444;CL:0002321!2.46e-08!248;CL:0000220!2.64e-08!246;CL:0000680!4.26e-08!57;CL:0000056!4.26e-08!57;CL:0000355!4.26e-08!57;CL:0002620!4.48e-08!23;CL:0000187!7.56e-08!54;CL:0000359!1.62e-07!32;CL:0000192!4.60e-07!42;CL:0000514!4.60e-07!42;CL:0000393!5.47e-07!60;CL:0000211!5.47e-07!60 | |ontology_enrichment_celltype=CL:0000548!2.02e-35!679;CL:0000004!2.02e-35!679;CL:0000255!2.02e-35!679;CL:0000012!2.26e-34!682;CL:0000055!5.57e-23!180;CL:0000144!2.12e-22!625;CL:0000003!3.76e-18!722;CL:0002371!2.50e-17!591;CL:0000063!5.41e-15!578;CL:0000057!1.27e-14!75;CL:0000723!1.05e-09!436;CL:0000048!2.31e-09!430;CL:0000034!2.72e-09!444;CL:0002321!2.46e-08!248;CL:0000220!2.64e-08!246;CL:0000680!4.26e-08!57;CL:0000056!4.26e-08!57;CL:0000355!4.26e-08!57;CL:0002620!4.48e-08!23;CL:0000187!7.56e-08!54;CL:0000359!1.62e-07!32;CL:0000192!4.60e-07!42;CL:0000514!4.60e-07!42;CL:0000393!5.47e-07!60;CL:0000211!5.47e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002620;4.53e-08;23!CL:0000359;4.86e-07;32!CL:0000057;7.52e-07;73 | |ontology_enrichment_celltype_v019=CL:0002620;4.53e-08;23!CL:0000359;4.86e-07;32!CL:0000057;7.52e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.51e-15,76;CL:0000723,6.22e-10,433;CL:0000048,1.38e-09,427;CL:0000034,1.64e-09,441;CL:0000680,1.69e-08,58;CL:0000056,1.69e-08,58;CL:0000355,1.69e-08,58;CL:0002321,1.69e-08,250;CL:0000187,2.98e-08,55;CL:0002620,4.48e-08,23;CL:0000359,1.62e-07,32;CL:0000192,1.76e-07,43;CL:0000514,1.76e-07,43;CL:0000393,2.32e-07,61;CL:0000211,2.32e-07,61 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:14566!3.04e-12!239;DOID:162!1.95e-11!235;DOID:0050687!1.67e-07!143 | |ontology_enrichment_disease=DOID:14566!3.04e-12!239;DOID:162!1.95e-11!235;DOID:0050687!1.67e-07!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:14566,3.04e-12,239;DOID:162,1.95e-11,235;DOID:0050687,1.67e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.70e-08!83;UBERON:0002329!1.70e-08!83;UBERON:0003077!1.70e-08!83;UBERON:0003059!1.70e-08!83;UBERON:0007282!1.70e-08!83;UBERON:0009618!1.70e-08!83;UBERON:0007285!1.70e-08!83;UBERON:0001637!5.84e-08!42;UBERON:0003509!5.84e-08!42;UBERON:0004572!5.84e-08!42;UBERON:0002199!8.99e-08!45;UBERON:0002416!8.99e-08!45;UBERON:0000486!1.82e-07!82;UBERON:0004290!1.84e-07!70;UBERON:0002097!2.05e-07!40;UBERON:0003102!5.22e-07!95;UBERON:0004573!7.08e-07!33;UBERON:0004571!7.08e-07!33 | |ontology_enrichment_uberon=UBERON:0000914!1.70e-08!83;UBERON:0002329!1.70e-08!83;UBERON:0003077!1.70e-08!83;UBERON:0003059!1.70e-08!83;UBERON:0007282!1.70e-08!83;UBERON:0009618!1.70e-08!83;UBERON:0007285!1.70e-08!83;UBERON:0001637!5.84e-08!42;UBERON:0003509!5.84e-08!42;UBERON:0004572!5.84e-08!42;UBERON:0002199!8.99e-08!45;UBERON:0002416!8.99e-08!45;UBERON:0000486!1.82e-07!82;UBERON:0004290!1.84e-07!70;UBERON:0002097!2.05e-07!40;UBERON:0003102!5.22e-07!95;UBERON:0004573!7.08e-07!33;UBERON:0004571!7.08e-07!33 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,5.84e-08,42;UBERON:0003509,5.84e-08,42;UBERON:0004572,5.84e-08,42;UBERON:0002329,7.94e-08,71;UBERON:0003059,7.94e-08,71;UBERON:0007282,7.94e-08,71;UBERON:0004290,7.94e-08,71;UBERON:0009618,7.94e-08,71;UBERON:0000486,8.21e-08,83;UBERON:0007524,8.73e-08,73;UBERON:0002199,1.31e-07,46;UBERON:0002416,1.31e-07,46;UBERON:0003077,1.72e-07,72;UBERON:0007285,1.72e-07,72;UBERON:0002097,3.04e-07,41;UBERON:0003102,3.51e-07,99;UBERON:0004573,7.08e-07,33;UBERON:0004571,7.08e-07,33;UBERON:0001134,7.81e-07,62;UBERON:0002036,7.81e-07,62;UBERON:0003082,7.81e-07,62 | |||
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| ||
|short_description=p1@GARS | |short_description=p1@GARS | ||
}} | }} |
Latest revision as of 06:23, 18 September 2015
Short description: | p1@GARS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GARS_5end |
Coexpression cluster: | C4683_Preadipocyte_giant_Smooth_Fibroblast_melanoma_Ewing_mesenchymal |
Association with transcript: | 0bp_to_ENST00000454308, ENST00000478124_5end |
EntrezGene: | GARS |
HGNC: | 4162 |
UniProt: | F8WCK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.51e-15 | 76 |
somatic stem cell | 6.22e-10 | 433 |
multi fate stem cell | 1.38e-09 | 427 |
stem cell | 1.64e-09 | 441 |
muscle precursor cell | 1.69e-08 | 58 |
myoblast | 1.69e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.69e-08 | 58 |
embryonic cell | 1.69e-08 | 250 |
muscle cell | 2.98e-08 | 55 |
skin fibroblast | 4.48e-08 | 23 |
vascular associated smooth muscle cell | 1.62e-07 | 32 |
smooth muscle cell | 1.76e-07 | 43 |
smooth muscle myoblast | 1.76e-07 | 43 |
electrically responsive cell | 2.32e-07 | 61 |
electrically active cell | 2.32e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
artery | 5.84e-08 | 42 |
arterial blood vessel | 5.84e-08 | 42 |
arterial system | 5.84e-08 | 42 |
somite | 7.94e-08 | 71 |
presomitic mesoderm | 7.94e-08 | 71 |
presumptive segmental plate | 7.94e-08 | 71 |
dermomyotome | 7.94e-08 | 71 |
trunk paraxial mesoderm | 7.94e-08 | 71 |
multilaminar epithelium | 8.21e-08 | 83 |
dense mesenchyme tissue | 8.73e-08 | 73 |
integument | 1.31e-07 | 46 |
integumental system | 1.31e-07 | 46 |
paraxial mesoderm | 1.72e-07 | 72 |
presumptive paraxial mesoderm | 1.72e-07 | 72 |
skin of body | 3.04e-07 | 41 |
surface structure | 3.51e-07 | 99 |
systemic artery | 7.08e-07 | 33 |
systemic arterial system | 7.08e-07 | 33 |
skeletal muscle tissue | 7.81e-07 | 62 |
striated muscle tissue | 7.81e-07 | 62 |
myotome | 7.81e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.04e-12 | 239 |
cancer | 1.95e-11 | 235 |
cell type cancer | 1.67e-07 | 143 |