FFCP PHASE1:Hg19::chr17:48133459..48133486,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3675 | |EntrezGene=3675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6139 | |HGNC=6139 | ||
|TSSclassifier=strong | |||
|UniProt=P26006 | |UniProt=P26006 | ||
|association_with_transcript=0bp_to_ENST00000320031_5end | |association_with_transcript=0bp_to_ENST00000320031_5end | ||
|cluster_id=chr17:48133459..48133486,+ | |||
|coexpression_cluster_id=C2418 | |coexpression_cluster_id=C2418 | ||
|description=CAGE_peak_1_at_ITGA3_5end | |description=CAGE_peak_1_at_ITGA3_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.67e-45!254;CL:0000220!6.13e-32!246;CL:0002321!3.49e-31!248;CL:0002076!1.79e-14!43;CL:0000076!1.26e-13!62;CL:0000222!2.48e-13!119;CL:0000223!2.45e-11!59;CL:0000055!9.40e-10!180;CL:0000548!1.14e-09!679;CL:0000004!1.14e-09!679;CL:0000255!1.14e-09!679;CL:1000497!1.76e-09!18;CL:0002518!1.76e-09!18;CL:0000012!8.02e-09!682;CL:1000449!9.89e-09!16;CL:0000077!1.02e-08!19;CL:0002368!3.97e-08!13;CL:0002077!9.09e-08!33;CL:1000507!1.82e-07!12;CL:1000494!1.82e-07!12;CL:0002681!5.81e-07!13;CL:0002584!5.81e-07!13;CL:0000075!7.12e-07!27 | |ontology_enrichment_celltype=CL:0000066!2.67e-45!254;CL:0000220!6.13e-32!246;CL:0002321!3.49e-31!248;CL:0002076!1.79e-14!43;CL:0000076!1.26e-13!62;CL:0000222!2.48e-13!119;CL:0000223!2.45e-11!59;CL:0000055!9.40e-10!180;CL:0000548!1.14e-09!679;CL:0000004!1.14e-09!679;CL:0000255!1.14e-09!679;CL:1000497!1.76e-09!18;CL:0002518!1.76e-09!18;CL:0000012!8.02e-09!682;CL:1000449!9.89e-09!16;CL:0000077!1.02e-08!19;CL:0002368!3.97e-08!13;CL:0002077!9.09e-08!33;CL:1000507!1.82e-07!12;CL:1000494!1.82e-07!12;CL:0002681!5.81e-07!13;CL:0002584!5.81e-07!13;CL:0000075!7.12e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.92e-11;42!CL:1000497;7.78e-10;17!CL:0002518;7.78e-10;17!CL:1000449;4.37e-09;15!CL:0000077;8.72e-09;19!CL:0002368;3.41e-08;13!CL:1000507;7.73e-08;10!CL:1000494;7.73e-08;10!CL:0002681;2.80e-07;12!CL:0002584;2.80e-07;12!CL:0000075;6.31e-07;27!CL:0002077;7.56e-07;34 | |ontology_enrichment_celltype_v019=CL:0002076;4.92e-11;42!CL:1000497;7.78e-10;17!CL:0002518;7.78e-10;17!CL:1000449;4.37e-09;15!CL:0000077;8.72e-09;19!CL:0002368;3.41e-08;13!CL:1000507;7.73e-08;10!CL:1000494;7.73e-08;10!CL:0002681;2.80e-07;12!CL:0002584;2.80e-07;12!CL:0000075;6.31e-07;27!CL:0002077;7.56e-07;34 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.93e-45,253;CL:0002321,1.74e-31,250;CL:0002076,1.06e-14,42;CL:0000222,1.34e-13,121;CL:0000076,2.05e-13,63;CL:0000223,1.48e-11,58;CL:1000497,8.00e-10,17;CL:0002518,8.00e-10,17;CL:1000449,4.46e-09,15;CL:0000077,8.75e-09,19;CL:0002368,3.44e-08,13;CL:1000507,7.80e-08,10;CL:1000494,7.80e-08,10;CL:0002077,1.36e-07,34;CL:0002681,2.85e-07,12;CL:0002584,2.85e-07,12;CL:0000075,6.34e-07,27;CL:0000213,8.78e-07,58;CL:0000215,8.78e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000223;8.32e-07;58 | |ontology_enrichment_development_v019=CL:0000223;8.32e-07;58 | ||
|ontology_enrichment_disease=DOID:305!1.10e-08!106;DOID:193!2.49e-08!29;DOID:120!3.17e-08!27 | |ontology_enrichment_disease=DOID:305!1.10e-08!106;DOID:193!2.49e-08!29;DOID:120!3.17e-08!27 | ||
|ontology_enrichment_disease_v019=DOID:193;2.20e-08;29!DOID:120;2.77e-08;27 | |ontology_enrichment_disease_v019=DOID:193;2.20e-08;29!DOID:120;2.77e-08;27 | ||
|ontology_enrichment_disease_v019_2=DOID:193,2.15e-08,29;DOID:305,2.25e-08,106;DOID:120,2.74e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.34e-20!347;UBERON:0003104!9.46e-19!238;UBERON:0009142!9.46e-19!238;UBERON:0000475!7.21e-17!365;UBERON:0002100!4.63e-15!216;UBERON:0000119!1.23e-14!312;UBERON:0000483!2.14e-14!309;UBERON:0001048!2.33e-13!168;UBERON:0004119!3.24e-13!169;UBERON:0000925!3.24e-13!169;UBERON:0006595!3.24e-13!169;UBERON:0000467!6.96e-13!625;UBERON:0005256!8.71e-13!143;UBERON:0000480!1.03e-12!626;UBERON:0000464!1.89e-12!104;UBERON:0000468!3.01e-12!659;UBERON:0000466!1.32e-11!126;UBERON:0003914!1.03e-10!118;UBERON:0001007!1.51e-09!155;UBERON:0001555!1.51e-09!155;UBERON:0007026!1.51e-09!155;UBERON:0000477!2.16e-09!286;UBERON:0000058!2.92e-09!26;UBERON:0005177!3.43e-09!107;UBERON:0000923!4.48e-09!604;UBERON:0005291!4.48e-09!604;UBERON:0006598!4.48e-09!604;UBERON:0002532!4.48e-09!604;UBERON:0002050!5.93e-09!605;UBERON:0005423!5.93e-09!605;UBERON:0004211!9.89e-09!16;UBERON:0001285!9.89e-09!16;UBERON:0007684!9.89e-09!16;UBERON:0003220!9.89e-09!16;UBERON:0004208!9.89e-09!16;UBERON:0000922!1.45e-08!612;UBERON:0000490!1.59e-08!138;UBERON:0005085!2.38e-08!29;UBERON:0006555!2.49e-08!17;UBERON:0005103!2.49e-08!17;UBERON:0000083!2.49e-08!17;UBERON:0009201!2.49e-08!17;UBERON:0004819!2.49e-08!17;UBERON:0006553!2.49e-08!17;UBERON:0003074!2.49e-08!17;UBERON:0003060!2.49e-08!17;UBERON:0000064!2.82e-08!219;UBERON:0002553!2.88e-08!70;UBERON:0000486!4.03e-08!82;UBERON:0000062!4.36e-08!511;UBERON:0003886!6.90e-08!63;UBERON:0002049!7.36e-08!79;UBERON:0007798!7.36e-08!79;UBERON:0000353!8.02e-08!17;UBERON:0000080!8.05e-08!18;UBERON:0002120!8.05e-08!18;UBERON:0004875!8.05e-08!18;UBERON:0005721!8.05e-08!18;UBERON:0005754!8.05e-08!18;UBERON:0007297!8.05e-08!18;UBERON:0003100!8.20e-08!41;UBERON:0004111!1.16e-07!241;UBERON:0006554!1.21e-07!44;UBERON:0004876!1.65e-07!20;UBERON:0009773!1.82e-07!12;UBERON:0001231!1.82e-07!12;UBERON:0004810!1.82e-07!12;UBERON:0001004!1.83e-07!72;UBERON:0001008!2.23e-07!45;UBERON:0003102!2.49e-07!95;UBERON:0003064!2.76e-07!37;UBERON:0001851!5.69e-07!16;UBERON:0001225!5.81e-07!13;UBERON:0008987!5.81e-07!13;UBERON:0000077!6.38e-07!130;UBERON:0000914!8.42e-07!83;UBERON:0002329!8.42e-07!83;UBERON:0003077!8.42e-07!83;UBERON:0003059!8.42e-07!83;UBERON:0007282!8.42e-07!83;UBERON:0009618!8.42e-07!83;UBERON:0007285!8.42e-07!83 | |ontology_enrichment_uberon=UBERON:0000481!2.34e-20!347;UBERON:0003104!9.46e-19!238;UBERON:0009142!9.46e-19!238;UBERON:0000475!7.21e-17!365;UBERON:0002100!4.63e-15!216;UBERON:0000119!1.23e-14!312;UBERON:0000483!2.14e-14!309;UBERON:0001048!2.33e-13!168;UBERON:0004119!3.24e-13!169;UBERON:0000925!3.24e-13!169;UBERON:0006595!3.24e-13!169;UBERON:0000467!6.96e-13!625;UBERON:0005256!8.71e-13!143;UBERON:0000480!1.03e-12!626;UBERON:0000464!1.89e-12!104;UBERON:0000468!3.01e-12!659;UBERON:0000466!1.32e-11!126;UBERON:0003914!1.03e-10!118;UBERON:0001007!1.51e-09!155;UBERON:0001555!1.51e-09!155;UBERON:0007026!1.51e-09!155;UBERON:0000477!2.16e-09!286;UBERON:0000058!2.92e-09!26;UBERON:0005177!3.43e-09!107;UBERON:0000923!4.48e-09!604;UBERON:0005291!4.48e-09!604;UBERON:0006598!4.48e-09!604;UBERON:0002532!4.48e-09!604;UBERON:0002050!5.93e-09!605;UBERON:0005423!5.93e-09!605;UBERON:0004211!9.89e-09!16;UBERON:0001285!9.89e-09!16;UBERON:0007684!9.89e-09!16;UBERON:0003220!9.89e-09!16;UBERON:0004208!9.89e-09!16;UBERON:0000922!1.45e-08!612;UBERON:0000490!1.59e-08!138;UBERON:0005085!2.38e-08!29;UBERON:0006555!2.49e-08!17;UBERON:0005103!2.49e-08!17;UBERON:0000083!2.49e-08!17;UBERON:0009201!2.49e-08!17;UBERON:0004819!2.49e-08!17;UBERON:0006553!2.49e-08!17;UBERON:0003074!2.49e-08!17;UBERON:0003060!2.49e-08!17;UBERON:0000064!2.82e-08!219;UBERON:0002553!2.88e-08!70;UBERON:0000486!4.03e-08!82;UBERON:0000062!4.36e-08!511;UBERON:0003886!6.90e-08!63;UBERON:0002049!7.36e-08!79;UBERON:0007798!7.36e-08!79;UBERON:0000353!8.02e-08!17;UBERON:0000080!8.05e-08!18;UBERON:0002120!8.05e-08!18;UBERON:0004875!8.05e-08!18;UBERON:0005721!8.05e-08!18;UBERON:0005754!8.05e-08!18;UBERON:0007297!8.05e-08!18;UBERON:0003100!8.20e-08!41;UBERON:0004111!1.16e-07!241;UBERON:0006554!1.21e-07!44;UBERON:0004876!1.65e-07!20;UBERON:0009773!1.82e-07!12;UBERON:0001231!1.82e-07!12;UBERON:0004810!1.82e-07!12;UBERON:0001004!1.83e-07!72;UBERON:0001008!2.23e-07!45;UBERON:0003102!2.49e-07!95;UBERON:0003064!2.76e-07!37;UBERON:0001851!5.69e-07!16;UBERON:0001225!5.81e-07!13;UBERON:0008987!5.81e-07!13;UBERON:0000077!6.38e-07!130;UBERON:0000914!8.42e-07!83;UBERON:0002329!8.42e-07!83;UBERON:0003077!8.42e-07!83;UBERON:0003059!8.42e-07!83;UBERON:0007282!8.42e-07!83;UBERON:0009618!8.42e-07!83;UBERON:0007285!8.42e-07!83 | ||
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| ||
|short_description=p1@ITGA3 | |short_description=p1@ITGA3 | ||
}} | }} |
Latest revision as of 22:21, 15 September 2015
Short description: | p1@ITGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ITGA3_5end |
Coexpression cluster: | C2418_Renal_Urothelial_salivary_Corneal_Bronchial_Mammary_Keratinocyte |
Association with transcript: | 0bp_to_ENST00000320031_5end |
EntrezGene: | ITGA3 |
HGNC: | 6139 |
UniProt: | P26006 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.93e-45 | 253 |
embryonic cell | 1.74e-31 | 250 |
endo-epithelial cell | 1.06e-14 | 42 |
mesodermal cell | 1.34e-13 | 121 |
squamous epithelial cell | 2.05e-13 | 63 |
endodermal cell | 1.48e-11 | 58 |
kidney cell | 8.00e-10 | 17 |
kidney epithelial cell | 8.00e-10 | 17 |
epithelial cell of nephron | 4.46e-09 | 15 |
mesothelial cell | 8.75e-09 | 19 |
respiratory epithelial cell | 3.44e-08 | 13 |
kidney tubule cell | 7.80e-08 | 10 |
nephron tubule epithelial cell | 7.80e-08 | 10 |
ecto-epithelial cell | 1.36e-07 | 34 |
kidney cortical cell | 2.85e-07 | 12 |
renal cortical epithelial cell | 2.85e-07 | 12 |
columnar/cuboidal epithelial cell | 6.34e-07 | 27 |
lining cell | 8.78e-07 | 58 |
barrier cell | 8.78e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 2.15e-08 | 29 |
carcinoma | 2.25e-08 | 106 |
female reproductive organ cancer | 2.74e-08 | 27 |