FFCP PHASE1:Hg19::chr1:111772381..111772415,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1117 | |EntrezGene=1117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1933 | |HGNC=1933 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000526684,ENST00000530597_5end | |association_with_transcript=0bp_to_ENST00000526684,ENST00000530597_5end | ||
|cluster_id=chr1:111772381..111772415,+ | |||
|coexpression_cluster_id=C359 | |coexpression_cluster_id=C359 | ||
|description=CAGE_peak_2_at_CHI3L2_5end | |description=CAGE_peak_2_at_CHI3L2_5end | ||
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|ontology_enrichment_celltype=CL:0000542!1.06e-47!53;CL:0000051!1.06e-47!53;CL:0000838!1.00e-46!52;CL:0000084!2.99e-23!25;CL:0000827!2.99e-23!25;CL:0002087!5.55e-23!119;CL:0000791!6.90e-23!18;CL:0000789!6.90e-23!18;CL:0002420!6.90e-23!18;CL:0002419!6.90e-23!18;CL:0000790!6.90e-23!18;CL:0000738!1.05e-21!140;CL:0000945!9.07e-21!24;CL:0000826!9.07e-21!24;CL:0002031!2.30e-17!124;CL:0000037!2.23e-15!172;CL:0000566!2.23e-15!172;CL:0000625!3.36e-15!11;CL:0000988!1.62e-13!182;CL:0002032!6.77e-13!165;CL:0000837!6.77e-13!165;CL:0000236!3.49e-10!14;CL:0000624!5.15e-08!6 | |ontology_enrichment_celltype=CL:0000542!1.06e-47!53;CL:0000051!1.06e-47!53;CL:0000838!1.00e-46!52;CL:0000084!2.99e-23!25;CL:0000827!2.99e-23!25;CL:0002087!5.55e-23!119;CL:0000791!6.90e-23!18;CL:0000789!6.90e-23!18;CL:0002420!6.90e-23!18;CL:0002419!6.90e-23!18;CL:0000790!6.90e-23!18;CL:0000738!1.05e-21!140;CL:0000945!9.07e-21!24;CL:0000826!9.07e-21!24;CL:0002031!2.30e-17!124;CL:0000037!2.23e-15!172;CL:0000566!2.23e-15!172;CL:0000625!3.36e-15!11;CL:0000988!1.62e-13!182;CL:0002032!6.77e-13!165;CL:0000837!6.77e-13!165;CL:0000236!3.49e-10!14;CL:0000624!5.15e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.69e-34;18!CL:0000789;1.69e-34;18!CL:0002419;1.69e-34;18!CL:0000084;1.94e-33;25!CL:0000542;6.15e-27;53!CL:0000625;4.93e-25;11!CL:0000945;3.64e-15;24!CL:0000624;3.10e-09;6!CL:0002087;5.03e-08;104!CL:0000623;2.04e-07;3!CL:0000767;2.13e-07;3!CL:0000226;2.28e-07;3!CL:0000842;2.28e-07;3 | |ontology_enrichment_celltype_v019=CL:0000791;1.69e-34;18!CL:0000789;1.69e-34;18!CL:0002419;1.69e-34;18!CL:0000084;1.94e-33;25!CL:0000542;6.15e-27;53!CL:0000625;4.93e-25;11!CL:0000945;3.64e-15;24!CL:0000624;3.10e-09;6!CL:0002087;5.03e-08;104!CL:0000623;2.04e-07;3!CL:0000767;2.13e-07;3!CL:0000226;2.28e-07;3!CL:0000842;2.28e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.42e-51,52;CL:0000542,2.14e-50,53;CL:0000051,2.14e-50,53;CL:0000791,1.87e-34,18;CL:0000789,1.87e-34,18;CL:0002420,1.87e-34,18;CL:0002419,1.87e-34,18;CL:0000790,1.87e-34,18;CL:0000084,2.28e-33,25;CL:0000827,2.28e-33,25;CL:0000625,4.77e-25,11;CL:0000738,1.56e-23,136;CL:0002087,1.61e-22,115;CL:0002031,1.90e-17,120;CL:0000037,8.82e-17,168;CL:0000988,2.46e-15,177;CL:0000945,3.91e-15,24;CL:0000826,3.91e-15,24;CL:0002032,4.26e-13,161;CL:0000837,4.26e-13,161;CL:0000624,3.40e-09,6;CL:0000817,4.31e-08,3;CL:0000236,9.06e-08,14;CL:0000623,1.86e-07,3;CL:0000825,1.86e-07,3;CL:0000767,2.18e-07,3;CL:0000226,2.87e-07,3;CL:0000842,2.87e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.69e-34;18!CL:0000051;6.15e-27;53 | |ontology_enrichment_development_v019=CL:0000790;1.69e-34;18!CL:0000051;6.15e-27;53 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.51e-11!15;UBERON:0000179!1.51e-11!15;UBERON:0000463!1.51e-11!15;UBERON:0004177!3.93e-11!7;UBERON:0003408!2.39e-08!10;UBERON:0007023!1.37e-07!115;UBERON:0002370!4.40e-07!4;UBERON:0005058!4.40e-07!4;UBERON:0009113!4.40e-07!4;UBERON:0003295!4.40e-07!4;UBERON:0005562!4.40e-07!4 | |ontology_enrichment_uberon=UBERON:0000178!1.51e-11!15;UBERON:0000179!1.51e-11!15;UBERON:0000463!1.51e-11!15;UBERON:0004177!3.93e-11!7;UBERON:0003408!2.39e-08!10;UBERON:0007023!1.37e-07!115;UBERON:0002370!4.40e-07!4;UBERON:0005058!4.40e-07!4;UBERON:0009113!4.40e-07!4;UBERON:0003295!4.40e-07!4;UBERON:0005562!4.40e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.07e-19;15!UBERON:0000179;1.07e-19;15!UBERON:0000463;1.07e-19;15!UBERON:0002390;5.56e-16;32!UBERON:0004177;1.33e-13;5!UBERON:0005057;1.33e-13;5!UBERON:0002193;5.63e-11;42!UBERON:0002106;1.15e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.07e-19;15!UBERON:0000179;1.07e-19;15!UBERON:0000463;1.07e-19;15!UBERON:0002390;5.56e-16;32!UBERON:0004177;1.33e-13;5!UBERON:0005057;1.33e-13;5!UBERON:0002193;5.63e-11;42!UBERON:0002106;1.15e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.18e-19,15;UBERON:0000179,1.18e-19,15;UBERON:0000463,1.18e-19,15;UBERON:0004177,4.96e-18,7;UBERON:0005057,4.96e-18,7;UBERON:0002370,4.51e-11,4;UBERON:0005058,4.51e-11,4;UBERON:0009113,4.51e-11,4;UBERON:0003295,4.51e-11,4;UBERON:0005562,4.51e-11,4;UBERON:0003408,5.41e-11,10;UBERON:0002106,1.17e-08,3;UBERON:0004854,1.17e-08,3;UBERON:0009034,1.17e-08,3;UBERON:0002095,1.17e-08,3;UBERON:0004782,1.17e-08,3;UBERON:0003281,1.17e-08,3;UBERON:0009664,1.17e-08,3;UBERON:0002296,1.17e-08,3;UBERON:0005602,1.17e-08,3;UBERON:0001179,1.17e-08,3;UBERON:0006293,1.17e-08,3;UBERON:0003351,2.45e-07,6 | |||
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|short_description=p2@CHI3L2 | |short_description=p2@CHI3L2 | ||
}} | }} |
Latest revision as of 03:01, 16 September 2015
Short description: | p2@CHI3L2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHI3L2_5end |
Coexpression cluster: | C359_xeroderma_tonsil_acute_colon_lymph_trachea_bladder |
Association with transcript: | 0bp_to_ENST00000526684, ENST00000530597_5end |
EntrezGene: | CHI3L2 |
HGNC: | 1933 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.42e-51 | 52 |
lymphocyte | 2.14e-50 | 53 |
common lymphoid progenitor | 2.14e-50 | 53 |
mature alpha-beta T cell | 1.87e-34 | 18 |
alpha-beta T cell | 1.87e-34 | 18 |
immature T cell | 1.87e-34 | 18 |
mature T cell | 1.87e-34 | 18 |
immature alpha-beta T cell | 1.87e-34 | 18 |
T cell | 2.28e-33 | 25 |
pro-T cell | 2.28e-33 | 25 |
CD8-positive, alpha-beta T cell | 4.77e-25 | 11 |
leukocyte | 1.56e-23 | 136 |
nongranular leukocyte | 1.61e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 1.90e-17 | 120 |
hematopoietic stem cell | 8.82e-17 | 168 |
hematopoietic cell | 2.46e-15 | 177 |
lymphocyte of B lineage | 3.91e-15 | 24 |
pro-B cell | 3.91e-15 | 24 |
hematopoietic oligopotent progenitor cell | 4.26e-13 | 161 |
hematopoietic multipotent progenitor cell | 4.26e-13 | 161 |
CD4-positive, alpha-beta T cell | 3.40e-09 | 6 |
precursor B cell | 4.31e-08 | 3 |
B cell | 9.06e-08 | 14 |
natural killer cell | 1.86e-07 | 3 |
pro-NK cell | 1.86e-07 | 3 |
basophil | 2.18e-07 | 3 |
single nucleate cell | 2.87e-07 | 3 |
mononuclear cell | 2.87e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.18e-19 | 15 |
haemolymphatic fluid | 1.18e-19 | 15 |
organism substance | 1.18e-19 | 15 |
hemopoietic organ | 4.96e-18 | 7 |
immune organ | 4.96e-18 | 7 |
thymus | 4.51e-11 | 4 |
hemolymphoid system gland | 4.51e-11 | 4 |
thymic region | 4.51e-11 | 4 |
pharyngeal gland | 4.51e-11 | 4 |
thymus primordium | 4.51e-11 | 4 |
gland of gut | 5.41e-11 | 10 |
spleen | 1.17e-08 | 3 |
gastrointestinal system mesentery | 1.17e-08 | 3 |
stomach region | 1.17e-08 | 3 |
mesentery | 1.17e-08 | 3 |
gastrointestinal system serosa | 1.17e-08 | 3 |
mesentery of stomach | 1.17e-08 | 3 |
gut mesentery | 1.17e-08 | 3 |
dorsal mesentery | 1.17e-08 | 3 |
dorsal mesogastrium | 1.17e-08 | 3 |
peritoneal cavity | 1.17e-08 | 3 |
spleen primordium | 1.17e-08 | 3 |
pharyngeal epithelium | 2.45e-07 | 6 |