FFCP PHASE1:Hg19::chr5:17743903..17743914,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:17743903..17743914,+ | |||
|description=CAGE_peak_at_chr5:17743903..17743914,+ | |description=CAGE_peak_at_chr5:17743903..17743914,+ | ||
|id=chr5:17743903..17743914,+ | |id=chr5:17743903..17743914,+ | ||
|ontology_enrichment_celltype=CL:0002605!3.30e-08!3;CL:0000153!8.38e-08!9;CL:0000447!8.38e-08!9 | |ontology_enrichment_celltype=CL:0002605!3.30e-08!3;CL:0000153!8.38e-08!9;CL:0000447!8.38e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.46e-22;9!CL:0000447;1.46e-22;9!CL:0000138;1.31e-15;6!CL:0000327;7.67e-14;15!CL:0000499;5.98e-13;28!CL:0002602;1.56e-12;2!CL:0002564;8.63e-09;3!CL:0000135;1.21e-08;3!CL:0000214;1.21e-08;3!CL:0000388;1.21e-08;3 | |ontology_enrichment_celltype_v019=CL:0000153;1.46e-22;9!CL:0000447;1.46e-22;9!CL:0000138;1.31e-15;6!CL:0000327;7.67e-14;15!CL:0000499;5.98e-13;28!CL:0002602;1.56e-12;2!CL:0002564;8.63e-09;3!CL:0000135;1.21e-08;3!CL:0000214;1.21e-08;3!CL:0000388;1.21e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.82e-22,9;CL:0000447,1.82e-22,9;CL:0000058,1.41e-15,6;CL:0000138,1.41e-15,6;CL:0000327,8.76e-14,15;CL:0000499,6.37e-13,28;CL:0002602,1.48e-12,2;CL:0002564,8.96e-09,3;CL:0000135,1.12e-08,3;CL:0000388,1.12e-08,3;CL:0000214,1.40e-08,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.24e-09!9 | |ontology_enrichment_uberon=UBERON:0001737!1.24e-09!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;1.32e-25;8!UBERON:0000982;1.32e-25;8!UBERON:0004770;1.32e-25;8!UBERON:0011135;7.23e-19;5!UBERON:0002216;7.23e-19;5!UBERON:0011134;7.23e-19;5!UBERON:0002209;7.23e-19;5!UBERON:0002213;7.23e-19;5!UBERON:0007844;7.23e-19;5!UBERON:0011138;7.23e-19;5!UBERON:0001130;7.23e-19;5!UBERON:0001066;7.23e-19;5!UBERON:0001468;7.23e-19;5!UBERON:0006444;1.56e-12;2!UBERON:0001995;1.56e-12;2!UBERON:0004715;1.56e-12;2!UBERON:0002418;8.63e-09;3!UBERON:0004755;8.63e-09;3!UBERON:0002242;8.63e-09;3!UBERON:0007846;1.21e-08;3!UBERON:0006915;1.21e-08;3!UBERON:0007616;1.21e-08;3!UBERON:0000043;1.21e-08;3!UBERON:0007845;1.21e-08;3!UBERON:0002217;1.21e-08;3!UBERON:0002018;1.21e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0004905;1.32e-25;8!UBERON:0000982;1.32e-25;8!UBERON:0004770;1.32e-25;8!UBERON:0011135;7.23e-19;5!UBERON:0002216;7.23e-19;5!UBERON:0011134;7.23e-19;5!UBERON:0002209;7.23e-19;5!UBERON:0002213;7.23e-19;5!UBERON:0007844;7.23e-19;5!UBERON:0011138;7.23e-19;5!UBERON:0001130;7.23e-19;5!UBERON:0001066;7.23e-19;5!UBERON:0001468;7.23e-19;5!UBERON:0006444;1.56e-12;2!UBERON:0001995;1.56e-12;2!UBERON:0004715;1.56e-12;2!UBERON:0002418;8.63e-09;3!UBERON:0004755;8.63e-09;3!UBERON:0002242;8.63e-09;3!UBERON:0007846;1.21e-08;3!UBERON:0006915;1.21e-08;3!UBERON:0007616;1.21e-08;3!UBERON:0000043;1.21e-08;3!UBERON:0007845;1.21e-08;3!UBERON:0002217;1.21e-08;3!UBERON:0002018;1.21e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,1.56e-25,8;UBERON:0000982,1.56e-25,8;UBERON:0004770,1.56e-25,8;UBERON:0011135,7.24e-19,5;UBERON:0002216,7.24e-19,5;UBERON:0011134,7.24e-19,5;UBERON:0002209,7.24e-19,5;UBERON:0002213,7.24e-19,5;UBERON:0005856,7.24e-19,5;UBERON:0005866,7.24e-19,5;UBERON:0005863,7.24e-19,5;UBERON:0007844,7.24e-19,5;UBERON:0011138,7.24e-19,5;UBERON:0001130,7.24e-19,5;UBERON:0001066,7.24e-19,5;UBERON:0001468,7.24e-19,5;UBERON:0006444,1.48e-12,2;UBERON:0001995,1.48e-12,2;UBERON:0004715,1.48e-12,2;UBERON:0002418,8.31e-09,3;UBERON:0004755,8.31e-09,3;UBERON:0002242,8.96e-09,3;UBERON:0003068,8.96e-09,3;UBERON:0002328,8.96e-09,3;UBERON:0004880,8.96e-09,3;UBERON:0007846,1.12e-08,3;UBERON:0000043,1.12e-08,3;UBERON:0007845,1.12e-08,3;UBERON:0006915,1.40e-08,3;UBERON:0007616,1.40e-08,3;UBERON:0002217,1.40e-08,3;UBERON:0002018,1.40e-08,3 | |||
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| ||
|short_description=p@chr5:17743903..17743914,+ | |short_description=p@chr5:17743903..17743914,+ | ||
}} | }} |
Latest revision as of 13:42, 30 July 2015
Short description: | p@chr5:17743903..17743914, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:17743903..17743914, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.82e-22 | 9 |
carbohydrate secreting cell | 1.82e-22 | 9 |
chondroblast | 1.41e-15 | 6 |
chondrocyte | 1.41e-15 | 6 |
extracellular matrix secreting cell | 8.76e-14 | 15 |
stromal cell | 6.37e-13 | 28 |
annulus pulposus cell | 1.48e-12 | 2 |
nucleus pulposus cell of intervertebral disc | 8.96e-09 | 3 |
fibrocyte | 1.12e-08 | 3 |
tendon cell | 1.12e-08 | 3 |
synovial cell | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
articulation | 1.56e-25 | 8 |
skeletal joint | 1.56e-25 | 8 |
articular system | 1.56e-25 | 8 |
intervertebral cartilage | 7.24e-19 | 5 |
symphysis | 7.24e-19 | 5 |
nonsynovial joint | 7.24e-19 | 5 |
fibrous joint | 7.24e-19 | 5 |
cartilaginous joint | 7.24e-19 | 5 |
developing mesenchymal condensation | 7.24e-19 | 5 |
pre-cartilage condensation | 7.24e-19 | 5 |
cartilaginous condensation | 7.24e-19 | 5 |
cartilage element | 7.24e-19 | 5 |
post-cranial axial skeletal system | 7.24e-19 | 5 |
vertebral column | 7.24e-19 | 5 |
intervertebral disk | 7.24e-19 | 5 |
intervertebral joint | 7.24e-19 | 5 |
annulus fibrosus | 1.48e-12 | 2 |
fibrocartilage | 1.48e-12 | 2 |
annulus fibrosus disci intervertebralis | 1.48e-12 | 2 |
cartilage tissue | 8.31e-09 | 3 |
skeletal tissue | 8.31e-09 | 3 |
nucleus pulposus | 8.96e-09 | 3 |
axial mesoderm | 8.96e-09 | 3 |
notochord | 8.96e-09 | 3 |
chordamesoderm | 8.96e-09 | 3 |
dense regular connective tissue | 1.12e-08 | 3 |
tendon | 1.12e-08 | 3 |
regular connective tissue | 1.12e-08 | 3 |
stratified squamous epithelium | 1.40e-08 | 3 |
layer of synovial tissue | 1.40e-08 | 3 |
synovial joint | 1.40e-08 | 3 |
synovial membrane of synovial joint | 1.40e-08 | 3 |