FFCP PHASE1:Hg19::chr7:141998704..141998722,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12176 | |HGNC=12176 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-294bp_to_ENST00000476502_5end | |association_with_transcript=-294bp_to_ENST00000476502_5end | ||
|cluster_id=chr7:141998704..141998722,+ | |||
|coexpression_cluster_id=C476 | |coexpression_cluster_id=C476 | ||
|description=CAGE_peak_1_at_TRBV1_5end | |description=CAGE_peak_1_at_TRBV1_5end | ||
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|ontology_enrichment_celltype=CL:0000791!5.77e-48!18;CL:0000789!5.77e-48!18;CL:0002420!5.77e-48!18;CL:0002419!5.77e-48!18;CL:0000790!5.77e-48!18;CL:0000084!3.07e-33!25;CL:0000827!3.07e-33!25;CL:0000625!1.08e-32!11;CL:0000838!2.24e-21!52;CL:0000542!7.21e-21!53;CL:0000051!7.21e-21!53;CL:0000624!6.29e-20!6;CL:0002087!7.26e-12!119;CL:0000898!4.33e-11!3;CL:0000738!4.91e-11!140;CL:0000842!2.19e-09!3;CL:0002031!2.67e-08!124;CL:0000815!5.47e-08!2;CL:0000792!5.47e-08!2;CL:0002677!5.47e-08!2;CL:0000037!9.79e-08!172;CL:0000566!9.79e-08!172;CL:0000224!3.82e-07!4;CL:0000988!5.86e-07!182 | |ontology_enrichment_celltype=CL:0000791!5.77e-48!18;CL:0000789!5.77e-48!18;CL:0002420!5.77e-48!18;CL:0002419!5.77e-48!18;CL:0000790!5.77e-48!18;CL:0000084!3.07e-33!25;CL:0000827!3.07e-33!25;CL:0000625!1.08e-32!11;CL:0000838!2.24e-21!52;CL:0000542!7.21e-21!53;CL:0000051!7.21e-21!53;CL:0000624!6.29e-20!6;CL:0002087!7.26e-12!119;CL:0000898!4.33e-11!3;CL:0000738!4.91e-11!140;CL:0000842!2.19e-09!3;CL:0002031!2.67e-08!124;CL:0000815!5.47e-08!2;CL:0000792!5.47e-08!2;CL:0002677!5.47e-08!2;CL:0000037!9.79e-08!172;CL:0000566!9.79e-08!172;CL:0000224!3.82e-07!4;CL:0000988!5.86e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.30e-56;18!CL:0000789;3.30e-56;18!CL:0002419;3.30e-56;18!CL:0000084;1.19e-39;25!CL:0000624;8.74e-33;6!CL:0000625;4.06e-30;11!CL:0000898;6.90e-18;3!CL:0000815;1.52e-12;2!CL:0000792;1.52e-12;2!CL:0002677;1.52e-12;2!CL:0000542;1.07e-08;53!CL:0000784;3.66e-08;3!CL:0000895;4.69e-07;1 | |ontology_enrichment_celltype_v019=CL:0000791;3.30e-56;18!CL:0000789;3.30e-56;18!CL:0002419;3.30e-56;18!CL:0000084;1.19e-39;25!CL:0000624;8.74e-33;6!CL:0000625;4.06e-30;11!CL:0000898;6.90e-18;3!CL:0000815;1.52e-12;2!CL:0000792;1.52e-12;2!CL:0002677;1.52e-12;2!CL:0000542;1.07e-08;53!CL:0000784;3.66e-08;3!CL:0000895;4.69e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.58e-56,18;CL:0000789,2.58e-56,18;CL:0002420,2.58e-56,18;CL:0002419,2.58e-56,18;CL:0000790,2.58e-56,18;CL:0000084,9.98e-40,25;CL:0000827,9.98e-40,25;CL:0000624,5.50e-33,6;CL:0000625,4.50e-30,11;CL:0000898,7.75e-18,3;CL:0000838,1.43e-17,52;CL:0000542,3.49e-17,53;CL:0000051,3.49e-17,53;CL:0000815,1.53e-12,2;CL:0000792,1.53e-12,2;CL:0002677,1.53e-12,2;CL:0000784,2.74e-08,3;CL:0002087,2.11e-07,115;CL:0000810,5.26e-07,1;CL:0000895,5.26e-07,1;CL:0002436,5.26e-07,1;CL:0002427,5.26e-07,1;CL:0002428,5.26e-07,1;CL:0002429,5.26e-07,1;CL:0002433,5.26e-07,1;CL:0002431,5.26e-07,1;CL:0002432,5.26e-07,1;CL:0002031,5.66e-07,120;CL:0000738,8.72e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;3.30e-56;18!CL:0000051;1.07e-08;53!CL:0002427;4.69e-07;1 | |ontology_enrichment_development_v019=CL:0000790;3.30e-56;18!CL:0000051;1.07e-08;53!CL:0002427;4.69e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.48e-15!15;UBERON:0000179!5.48e-15!15;UBERON:0000463!5.48e-15!15;UBERON:0004177!2.76e-11!7;UBERON:0002370!1.70e-08!4;UBERON:0005058!1.70e-08!4;UBERON:0009113!1.70e-08!4;UBERON:0003295!1.70e-08!4;UBERON:0005562!1.70e-08!4 | |ontology_enrichment_uberon=UBERON:0000178!5.48e-15!15;UBERON:0000179!5.48e-15!15;UBERON:0000463!5.48e-15!15;UBERON:0004177!2.76e-11!7;UBERON:0002370!1.70e-08!4;UBERON:0005058!1.70e-08!4;UBERON:0009113!1.70e-08!4;UBERON:0003295!1.70e-08!4;UBERON:0005562!1.70e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.02e-12;2!UBERON:0005058;1.02e-12;2!UBERON:0009113;1.02e-12;2 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.02e-12;2!UBERON:0005058;1.02e-12;2!UBERON:0009113;1.02e-12;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.13e-13,4;UBERON:0005058,1.13e-13,4;UBERON:0009113,1.13e-13,4;UBERON:0003295,1.13e-13,4;UBERON:0005562,1.13e-13,4;UBERON:0003351,2.89e-09,6;UBERON:0004177,5.34e-08,7;UBERON:0005057,5.34e-08,7 | |||
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| ||
|short_description=p1@TRBV1 | |short_description=p1@TRBV1 | ||
}} | }} |
Latest revision as of 19:26, 16 September 2015
Short description: | p1@TRBV1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBV1_5end |
Coexpression cluster: | C476_thymus_acute_Hodgkin_CD4_CD8_chronic_vein |
Association with transcript: | -294bp_to_ENST00000476502_5end |
EntrezGene: | NA |
HGNC: | 12176 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.13e-13 | 4 |
hemolymphoid system gland | 1.13e-13 | 4 |
thymic region | 1.13e-13 | 4 |
pharyngeal gland | 1.13e-13 | 4 |
thymus primordium | 1.13e-13 | 4 |
pharyngeal epithelium | 2.89e-09 | 6 |
hemopoietic organ | 5.34e-08 | 7 |
immune organ | 5.34e-08 | 7 |