FFCP PHASE1:Hg19::chr6:33749091..33749103,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221496 | |EntrezGene=221496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21244 | |HGNC=21244 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=220bp_to_ENST00000513832_5end | |association_with_transcript=220bp_to_ENST00000513832_5end | ||
|cluster_id=chr6:33749091..33749103,- | |||
|coexpression_cluster_id=C139 | |coexpression_cluster_id=C139 | ||
|description=CAGE_peak_4_at_LEMD2_5end | |description=CAGE_peak_4_at_LEMD2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002139!2.96e-15!24;CL:0000115!4.34e-15!35;CL:0005020!6.87e-14!6;CL:0002138!6.87e-14!6;CL:0005022!6.87e-14!6;CL:0002078!1.47e-11!44;CL:0000066!3.04e-09!254;CL:0000213!1.93e-08!57;CL:0000215!1.93e-08!57;CL:0000039!2.28e-07!7;CL:0000586!2.28e-07!7;CL:0000064!3.45e-07!3;CL:0005012!3.45e-07!3;CL:0000067!3.45e-07!3;CL:0002304!3.45e-07!3;CL:1000612!3.77e-07!7;CL:1000746!3.77e-07!7 | |ontology_enrichment_celltype=CL:0002139!2.96e-15!24;CL:0000115!4.34e-15!35;CL:0005020!6.87e-14!6;CL:0002138!6.87e-14!6;CL:0005022!6.87e-14!6;CL:0002078!1.47e-11!44;CL:0000066!3.04e-09!254;CL:0000213!1.93e-08!57;CL:0000215!1.93e-08!57;CL:0000039!2.28e-07!7;CL:0000586!2.28e-07!7;CL:0000064!3.45e-07!3;CL:0005012!3.45e-07!3;CL:0000067!3.45e-07!3;CL:0002304!3.45e-07!3;CL:1000612!3.77e-07!7;CL:1000746!3.77e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;8.05e-37;7!CL:0000586;8.05e-37;7!CL:0002188;6.04e-07;5!CL:0002322;6.77e-07;5 | |ontology_enrichment_celltype_v019=CL:0000039;8.05e-37;7!CL:0000586;8.05e-37;7!CL:0002188;6.04e-07;5!CL:0002322;6.77e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.12e-37,7;CL:0000586,7.12e-37,7;CL:0002188,6.39e-07,5;CL:0002322,6.77e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.77e-45;10!UBERON:0005564;1.77e-45;10 | |ontology_enrichment_development_v019=UBERON:0009117;1.77e-45;10!UBERON:0005564;1.77e-45;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;4.61e-21;22!DOID:2994;4.61e-21;22 | |ontology_enrichment_disease_v019=DOID:3095;4.61e-21;22!DOID:2994;4.61e-21;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,4.38e-21,22;DOID:2994,4.38e-21,22 | |||
|ontology_enrichment_uberon=UBERON:0001473!1.94e-10!8;UBERON:0004536!1.94e-10!8;UBERON:0006558!1.94e-10!8;UBERON:0002465!2.32e-08!10;UBERON:0000991!3.84e-08!21;UBERON:0009196!3.84e-08!21;UBERON:0009117!3.84e-08!21;UBERON:0005564!3.84e-08!21;UBERON:0004176!9.62e-08!22;UBERON:0001778!3.45e-07!3;UBERON:0001775!3.45e-07!3;UBERON:0000074!3.77e-07!7;UBERON:0001229!3.77e-07!7;UBERON:0001230!3.77e-07!7;UBERON:0005749!3.77e-07!7;UBERON:0004199!3.77e-07!7;UBERON:0004209!3.77e-07!7;UBERON:0004198!3.77e-07!7 | |ontology_enrichment_uberon=UBERON:0001473!1.94e-10!8;UBERON:0004536!1.94e-10!8;UBERON:0006558!1.94e-10!8;UBERON:0002465!2.32e-08!10;UBERON:0000991!3.84e-08!21;UBERON:0009196!3.84e-08!21;UBERON:0009117!3.84e-08!21;UBERON:0005564!3.84e-08!21;UBERON:0004176!9.62e-08!22;UBERON:0001778!3.45e-07!3;UBERON:0001775!3.45e-07!3;UBERON:0000074!3.77e-07!7;UBERON:0001229!3.77e-07!7;UBERON:0001230!3.77e-07!7;UBERON:0005749!3.77e-07!7;UBERON:0004199!3.77e-07!7;UBERON:0004209!3.77e-07!7;UBERON:0004198!3.77e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.44e-32;8!UBERON:0003135;9.02e-24;11!UBERON:0000991;4.92e-22;21!UBERON:0003101;2.74e-12;22!UBERON:0000079;2.74e-12;22!UBERON:0002323;1.10e-08;45!UBERON:0003133;2.04e-08;44!UBERON:0000922;2.71e-07;49!UBERON:0002553;4.67e-07;52!UBERON:0004458;5.57e-07;48!UBERON:0005156;7.27e-07;59!UBERON:0000990;7.27e-07;59 | |ontology_enrichment_uberon_v019=UBERON:0000473;2.44e-32;8!UBERON:0003135;9.02e-24;11!UBERON:0000991;4.92e-22;21!UBERON:0003101;2.74e-12;22!UBERON:0000079;2.74e-12;22!UBERON:0002323;1.10e-08;45!UBERON:0003133;2.04e-08;44!UBERON:0000922;2.71e-07;49!UBERON:0002553;4.67e-07;52!UBERON:0004458;5.57e-07;48!UBERON:0005156;7.27e-07;59!UBERON:0000990;7.27e-07;59 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.19e-32,8;UBERON:0003135,8.35e-24,11;UBERON:0000991,4.66e-22,21;UBERON:0009196,4.66e-22,21;UBERON:0009117,4.66e-22,21;UBERON:0005564,4.66e-22,21;UBERON:0004176,4.38e-21,22;UBERON:0003886,1.91e-13,54;UBERON:0003101,2.64e-12,22;UBERON:0000079,2.64e-12,22;UBERON:0002553,6.07e-12,61;UBERON:0002323,2.27e-10,46;UBERON:0003133,5.88e-10,48;UBERON:0004458,9.18e-10,49;UBERON:0005156,3.49e-08,59;UBERON:0000990,3.49e-08,59 | |||
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|short_description=p4@LEMD2 | |short_description=p4@LEMD2 | ||
}} | }} |
Latest revision as of 08:11, 18 September 2015
Short description: | p4@LEMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LEMD2_5end |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | 220bp_to_ENST00000513832_5end |
EntrezGene: | LEMD2 |
HGNC: | 21244 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.12e-37 | 7 |
germ cell | 7.12e-37 | 7 |
glomerular endothelial cell | 6.39e-07 | 5 |
embryonic stem cell | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
testis | 2.19e-32 | 8 |
male reproductive organ | 8.35e-24 | 11 |
gonad | 4.66e-22 | 21 |
indifferent external genitalia | 4.66e-22 | 21 |
indifferent gonad | 4.66e-22 | 21 |
gonad primordium | 4.66e-22 | 21 |
external genitalia | 4.38e-21 | 22 |
body cavity precursor | 1.91e-13 | 54 |
male organism | 2.64e-12 | 22 |
male reproductive system | 2.64e-12 | 22 |
anatomical cavity | 6.07e-12 | 61 |
body cavity | 2.27e-10 | 46 |
reproductive organ | 5.88e-10 | 48 |
body cavity or lining | 9.18e-10 | 49 |
reproductive structure | 3.49e-08 | 59 |
reproductive system | 3.49e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.38e-21 | 22 |
germ cell cancer | 4.38e-21 | 22 |