FFCP PHASE1:Hg19::chr4:109088266..109088277,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=641518 | |EntrezGene=641518 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-403bp_to_ENST00000436413,NR_029374_5end | |association_with_transcript=-403bp_to_ENST00000436413,NR_029374_5end | ||
|cluster_id=chr4:109088266..109088277,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_LOC641518_5end | |description=CAGE_peak_1_at_LOC641518_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!1.35e-21!25;CL:0000827!1.35e-21!25;CL:0000791!1.37e-20!18;CL:0000789!1.37e-20!18;CL:0002420!1.37e-20!18;CL:0002419!1.37e-20!18;CL:0000790!1.37e-20!18;CL:0000838!2.92e-16!52;CL:0000542!7.75e-16!53;CL:0000051!7.75e-16!53;CL:0000625!3.14e-13!11;CL:0000624!1.50e-10!6;CL:0000623!2.11e-07!3;CL:0000825!2.11e-07!3 | |ontology_enrichment_celltype=CL:0000084!1.35e-21!25;CL:0000827!1.35e-21!25;CL:0000791!1.37e-20!18;CL:0000789!1.37e-20!18;CL:0002420!1.37e-20!18;CL:0002419!1.37e-20!18;CL:0000790!1.37e-20!18;CL:0000838!2.92e-16!52;CL:0000542!7.75e-16!53;CL:0000051!7.75e-16!53;CL:0000625!3.14e-13!11;CL:0000624!1.50e-10!6;CL:0000623!2.11e-07!3;CL:0000825!2.11e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;4.14e-31;18!CL:0000789;4.14e-31;18!CL:0002419;4.14e-31;18!CL:0000084;5.78e-29;25!CL:0000624;2.94e-18;6!CL:0000625;3.48e-17;11!CL:0000542;1.68e-07;53!CL:0000815;2.43e-07;2!CL:0000792;2.43e-07;2!CL:0002677;2.43e-07;2 | |ontology_enrichment_celltype_v019=CL:0000791;4.14e-31;18!CL:0000789;4.14e-31;18!CL:0002419;4.14e-31;18!CL:0000084;5.78e-29;25!CL:0000624;2.94e-18;6!CL:0000625;3.48e-17;11!CL:0000542;1.68e-07;53!CL:0000815;2.43e-07;2!CL:0000792;2.43e-07;2!CL:0002677;2.43e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.80e-31,18;CL:0000789,3.80e-31,18;CL:0002420,3.80e-31,18;CL:0002419,3.80e-31,18;CL:0000790,3.80e-31,18;CL:0000084,6.49e-29,25;CL:0000827,6.49e-29,25;CL:0000624,2.33e-18,6;CL:0000625,3.79e-17,11;CL:0000838,1.68e-13,52;CL:0000542,3.13e-13,53;CL:0000051,3.13e-13,53;CL:0000815,2.58e-07,2;CL:0000792,2.58e-07,2;CL:0002677,2.58e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;4.14e-31;18!CL:0000051;1.68e-07;53 | |ontology_enrichment_development_v019=CL:0000790;4.14e-31;18!CL:0000051;1.68e-07;53 | ||
|ontology_enrichment_disease=DOID:1036!3.90e-07!8 | |ontology_enrichment_disease=DOID:1036!3.90e-07!8 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.30e-07!15;UBERON:0000179!5.30e-07!15;UBERON:0000463!5.30e-07!15 | |ontology_enrichment_uberon=UBERON:0000178!5.30e-07!15;UBERON:0000179!5.30e-07!15;UBERON:0000463!5.30e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.29e-24;2!UBERON:0005058;1.29e-24;2!UBERON:0009113;1.29e-24;2!UBERON:0004177;1.95e-10;5!UBERON:0005057;1.95e-10;5 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.29e-24;2!UBERON:0005058;1.29e-24;2!UBERON:0009113;1.29e-24;2!UBERON:0004177;1.95e-10;5!UBERON:0005057;1.95e-10;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,7.26e-13,4;UBERON:0005058,7.26e-13,4;UBERON:0009113,7.26e-13,4;UBERON:0003295,7.26e-13,4;UBERON:0005562,7.26e-13,4;UBERON:0003351,7.05e-09,6;UBERON:0004177,9.88e-08,7;UBERON:0005057,9.88e-08,7 | |||
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| ||
|short_description=p1@LOC641518 | |short_description=p1@LOC641518 | ||
}} | }} |
Latest revision as of 14:57, 24 September 2015
Short description: | p1@LOC641518 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC641518_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -403bp_to_ENST00000436413, NR_029374_5end |
EntrezGene: | LOC641518 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.80e-31 | 18 |
alpha-beta T cell | 3.80e-31 | 18 |
immature T cell | 3.80e-31 | 18 |
mature T cell | 3.80e-31 | 18 |
immature alpha-beta T cell | 3.80e-31 | 18 |
T cell | 6.49e-29 | 25 |
pro-T cell | 6.49e-29 | 25 |
CD4-positive, alpha-beta T cell | 2.33e-18 | 6 |
CD8-positive, alpha-beta T cell | 3.79e-17 | 11 |
lymphoid lineage restricted progenitor cell | 1.68e-13 | 52 |
lymphocyte | 3.13e-13 | 53 |
common lymphoid progenitor | 3.13e-13 | 53 |
regulatory T cell | 2.58e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.58e-07 | 2 |
naive regulatory T cell | 2.58e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 7.26e-13 | 4 |
hemolymphoid system gland | 7.26e-13 | 4 |
thymic region | 7.26e-13 | 4 |
pharyngeal gland | 7.26e-13 | 4 |
thymus primordium | 7.26e-13 | 4 |
pharyngeal epithelium | 7.05e-09 | 6 |
hemopoietic organ | 9.88e-08 | 7 |
immune organ | 9.88e-08 | 7 |