FFCP PHASE1:Hg19::chr11:1855645..1855729,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90019 | |EntrezGene=90019 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19264 | |HGNC=19264 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NBV8 | |UniProt=Q8NBV8 | ||
|association_with_transcript=0bp_to_ENST00000381968,ENST00000464897,NM_138567,uc001lue.1_5end | |association_with_transcript=0bp_to_ENST00000381968,ENST00000464897,NM_138567,uc001lue.1_5end | ||
|cluster_id=chr11:1855645..1855729,+ | |||
|coexpression_cluster_id=C3124 | |coexpression_cluster_id=C3124 | ||
|description=CAGE_peak_2_at_SYT8_5end | |description=CAGE_peak_2_at_SYT8_5end | ||
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|ontology_enrichment_celltype=CL:0002076!8.56e-29!43;CL:0000223!4.53e-23!59;CL:0000066!4.80e-19!254;CL:0002251!3.47e-15!21;CL:0002368!2.25e-13!13;CL:0002202!1.76e-08!9;CL:0002632!1.76e-08!9 | |ontology_enrichment_celltype=CL:0002076!8.56e-29!43;CL:0000223!4.53e-23!59;CL:0000066!4.80e-19!254;CL:0002251!3.47e-15!21;CL:0002368!2.25e-13!13;CL:0002202!1.76e-08!9;CL:0002632!1.76e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.02e-18;42!CL:0002368;2.89e-12;13!CL:0002251;1.03e-11;20!CL:0002541;6.42e-08;3!CL:0002623;1.41e-07;3!CL:0000349;7.80e-07;19 | |ontology_enrichment_celltype_v019=CL:0002076;1.02e-18;42!CL:0002368;2.89e-12;13!CL:0002251;1.03e-11;20!CL:0002541;6.42e-08;3!CL:0002623;1.41e-07;3!CL:0000349;7.80e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.92e-25,42;CL:0000223,1.20e-17,58;CL:0002368,2.79e-12,13;CL:0002251,1.05e-11,20;CL:0000066,4.19e-11,253;CL:0002541,7.90e-08,3;CL:0002623,1.63e-07,3;CL:0000349,8.50e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;5.53e-09;58 | |ontology_enrichment_development_v019=CL:0000223;5.53e-09;58 | ||
|ontology_enrichment_disease=DOID:1749!4.45e-16!14;DOID:305!5.92e-13!106;DOID:299!8.87e-10!25;DOID:0050687!3.22e-08!143 | |ontology_enrichment_disease=DOID:1749!4.45e-16!14;DOID:305!5.92e-13!106;DOID:299!8.87e-10!25;DOID:0050687!3.22e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.86e-07;14 | |ontology_enrichment_disease_v019=DOID:1749;4.86e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,4.33e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.82e-26!169;UBERON:0000925!2.82e-26!169;UBERON:0006595!2.82e-26!169;UBERON:0001007!8.07e-19!155;UBERON:0001555!8.07e-19!155;UBERON:0007026!8.07e-19!155;UBERON:0000077!3.27e-18!130;UBERON:0004921!6.82e-18!129;UBERON:0004185!6.82e-18!129;UBERON:0001004!4.06e-16!72;UBERON:0000161!1.66e-15!35;UBERON:0001041!1.54e-11!98;UBERON:0005631!2.88e-11!14;UBERON:0000158!2.88e-11!14;UBERON:0000065!6.44e-11!53;UBERON:0005153!1.30e-10!37;UBERON:0000344!1.49e-10!12;UBERON:0005911!1.72e-10!82;UBERON:0000166!1.98e-10!21;UBERON:0000464!7.60e-10!104;UBERON:0000466!4.12e-09!126;UBERON:0005178!4.16e-09!34;UBERON:0002224!4.16e-09!34;UBERON:0005181!1.06e-08!35;UBERON:0005156!2.65e-08!59;UBERON:0000990!2.65e-08!59;UBERON:0000165!5.60e-08!28;UBERON:0000930!5.60e-08!28;UBERON:0005157!5.77e-08!51;UBERON:0003124!7.55e-08!7;UBERON:0000974!1.14e-07!10;UBERON:0007196!1.32e-07!14;UBERON:0001558!1.32e-07!14;UBERON:0003729!1.64e-07!5;UBERON:0000365!4.41e-07!5;UBERON:0000915!4.86e-07!52;UBERON:0004175!7.85e-07!25;UBERON:0000062!8.54e-07!511 | |ontology_enrichment_uberon=UBERON:0004119!2.82e-26!169;UBERON:0000925!2.82e-26!169;UBERON:0006595!2.82e-26!169;UBERON:0001007!8.07e-19!155;UBERON:0001555!8.07e-19!155;UBERON:0007026!8.07e-19!155;UBERON:0000077!3.27e-18!130;UBERON:0004921!6.82e-18!129;UBERON:0004185!6.82e-18!129;UBERON:0001004!4.06e-16!72;UBERON:0000161!1.66e-15!35;UBERON:0001041!1.54e-11!98;UBERON:0005631!2.88e-11!14;UBERON:0000158!2.88e-11!14;UBERON:0000065!6.44e-11!53;UBERON:0005153!1.30e-10!37;UBERON:0000344!1.49e-10!12;UBERON:0005911!1.72e-10!82;UBERON:0000166!1.98e-10!21;UBERON:0000464!7.60e-10!104;UBERON:0000466!4.12e-09!126;UBERON:0005178!4.16e-09!34;UBERON:0002224!4.16e-09!34;UBERON:0005181!1.06e-08!35;UBERON:0005156!2.65e-08!59;UBERON:0000990!2.65e-08!59;UBERON:0000165!5.60e-08!28;UBERON:0000930!5.60e-08!28;UBERON:0005157!5.77e-08!51;UBERON:0003124!7.55e-08!7;UBERON:0000974!1.14e-07!10;UBERON:0007196!1.32e-07!14;UBERON:0001558!1.32e-07!14;UBERON:0003729!1.64e-07!5;UBERON:0000365!4.41e-07!5;UBERON:0000915!4.86e-07!52;UBERON:0004175!7.85e-07!25;UBERON:0000062!8.54e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;5.63e-10;33!UBERON:0001044;7.31e-09;6!UBERON:0003293;7.31e-09;6!UBERON:0003294;7.31e-09;6!UBERON:0010047;7.31e-09;6!UBERON:0003408;7.31e-09;6!UBERON:0000167;7.31e-09;6!UBERON:0000165;7.54e-09;28!UBERON:0001041;8.21e-09;14!UBERON:0005631;2.00e-08;10!UBERON:0000158;2.00e-08;10!UBERON:0000161;6.07e-08;19!UBERON:0000166;6.07e-08;19!UBERON:0003124;6.42e-08;3!UBERON:0000920;6.42e-08;3!UBERON:0001723;1.23e-07;3!UBERON:0001033;1.23e-07;3!UBERON:0000365;2.97e-07;5!UBERON:0000058;4.13e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0004921;5.63e-10;33!UBERON:0001044;7.31e-09;6!UBERON:0003293;7.31e-09;6!UBERON:0003294;7.31e-09;6!UBERON:0010047;7.31e-09;6!UBERON:0003408;7.31e-09;6!UBERON:0000167;7.31e-09;6!UBERON:0000165;7.54e-09;28!UBERON:0001041;8.21e-09;14!UBERON:0005631;2.00e-08;10!UBERON:0000158;2.00e-08;10!UBERON:0000161;6.07e-08;19!UBERON:0000166;6.07e-08;19!UBERON:0003124;6.42e-08;3!UBERON:0000920;6.42e-08;3!UBERON:0001723;1.23e-07;3!UBERON:0001033;1.23e-07;3!UBERON:0000365;2.97e-07;5!UBERON:0000058;4.13e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.77e-21,160;UBERON:0000925,4.77e-21,160;UBERON:0006595,4.77e-21,160;UBERON:0000161,2.21e-15,36;UBERON:0001007,3.37e-13,145;UBERON:0001555,3.37e-13,145;UBERON:0007026,3.37e-13,145;UBERON:0004921,8.75e-13,118;UBERON:0005631,1.87e-12,14;UBERON:0000158,1.87e-12,14;UBERON:0003124,1.07e-11,7;UBERON:0001004,1.32e-10,74;UBERON:0000166,3.35e-10,22;UBERON:0001044,7.78e-09,6;UBERON:0003293,7.78e-09,6;UBERON:0003294,7.78e-09,6;UBERON:0010047,7.78e-09,6;UBERON:0000167,7.78e-09,6;UBERON:0004175,1.59e-08,25;UBERON:0000165,1.82e-08,29;UBERON:0000930,1.82e-08,29;UBERON:0000920,7.90e-08,3;UBERON:0001008,8.60e-08,48;UBERON:0001723,1.09e-07,3;UBERON:0001033,1.09e-07,3;UBERON:0010056,1.09e-07,3;UBERON:0000065,2.09e-07,54;UBERON:0000365,3.10e-07,5;UBERON:0001041,3.49e-07,87;UBERON:0005153,4.74e-07,37;UBERON:0003064,5.27e-07,28;UBERON:0005157,6.24e-07,47;UBERON:0006554,6.35e-07,47;UBERON:0006947,8.73e-07,3;UBERON:0004054,8.73e-07,3 | |||
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| ||
|short_description=p2@SYT8 | |short_description=p2@SYT8 | ||
}} | }} |
Latest revision as of 02:56, 17 September 2015
Short description: | p2@SYT8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYT8_5end |
Coexpression cluster: | C3124_oral_chorionic_amniotic_Mammary_Small_gall_glassy |
Association with transcript: | 0bp_to_ENST00000381968, ENST00000464897, NM_138567, uc001lue.1_5end |
EntrezGene: | SYT8 |
HGNC: | 19264 |
UniProt: | Q8NBV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.92e-25 | 42 |
endodermal cell | 1.20e-17 | 58 |
respiratory epithelial cell | 2.79e-12 | 13 |
epithelial cell of alimentary canal | 1.05e-11 | 20 |
epithelial cell | 4.19e-11 | 253 |
chorionic membrane mesenchymal stem cell | 7.90e-08 | 3 |
acinar cell of salivary gland | 1.63e-07 | 3 |
extraembryonic cell | 8.50e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.77e-21 | 160 |
endoderm | 4.77e-21 | 160 |
presumptive endoderm | 4.77e-21 | 160 |
orifice | 2.21e-15 | 36 |
digestive system | 3.37e-13 | 145 |
digestive tract | 3.37e-13 | 145 |
primitive gut | 3.37e-13 | 145 |
subdivision of digestive tract | 8.75e-13 | 118 |
extraembryonic membrane | 1.87e-12 | 14 |
membranous layer | 1.87e-12 | 14 |
chorion | 1.07e-11 | 7 |
respiratory system | 1.32e-10 | 74 |
oral opening | 3.35e-10 | 22 |
saliva-secreting gland | 7.78e-09 | 6 |
gland of oral region | 7.78e-09 | 6 |
gland of foregut | 7.78e-09 | 6 |
oral gland | 7.78e-09 | 6 |
oral cavity | 7.78e-09 | 6 |
internal genitalia | 1.59e-08 | 25 |
mouth | 1.82e-08 | 29 |
stomodeum | 1.82e-08 | 29 |
egg chorion | 7.90e-08 | 3 |
renal system | 8.60e-08 | 48 |
tongue | 1.09e-07 | 3 |
gustatory system | 1.09e-07 | 3 |
future tongue | 1.09e-07 | 3 |
respiratory tract | 2.09e-07 | 54 |
urothelium | 3.10e-07 | 5 |
foregut | 3.49e-07 | 87 |
epithelial bud | 4.74e-07 | 37 |
intermediate mesoderm | 5.27e-07 | 28 |
epithelial fold | 6.24e-07 | 47 |
urinary system structure | 6.35e-07 | 47 |
male genital duct | 8.73e-07 | 3 |
internal male genitalia | 8.73e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.33e-07 | 14 |